├── README.md ├── data └── 3.6k.fam01151.fa └── scripts ├── addingNameToA3m.py ├── creatingHhblitsDb.py ├── fastaQualityControl.py ├── genomeXfamily.py ├── hhblits.py ├── hhblits.smk ├── makehhblitsdb.py ├── qualityControl.py ├── runningMclClustering.py └── subfamilies.py /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/README.md -------------------------------------------------------------------------------- /data/3.6k.fam01151.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/data/3.6k.fam01151.fa -------------------------------------------------------------------------------- /scripts/addingNameToA3m.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/addingNameToA3m.py -------------------------------------------------------------------------------- /scripts/creatingHhblitsDb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/creatingHhblitsDb.py -------------------------------------------------------------------------------- /scripts/fastaQualityControl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/fastaQualityControl.py -------------------------------------------------------------------------------- /scripts/genomeXfamily.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/genomeXfamily.py -------------------------------------------------------------------------------- /scripts/hhblits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/hhblits.py -------------------------------------------------------------------------------- /scripts/hhblits.smk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/hhblits.smk -------------------------------------------------------------------------------- /scripts/makehhblitsdb.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/makehhblitsdb.py -------------------------------------------------------------------------------- /scripts/qualityControl.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/qualityControl.py -------------------------------------------------------------------------------- /scripts/runningMclClustering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/runningMclClustering.py -------------------------------------------------------------------------------- /scripts/subfamilies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/raphael-upmc/proteinClusteringPipeline/HEAD/scripts/subfamilies.py --------------------------------------------------------------------------------