├── .flake8 ├── .github ├── CODE_OF_CONDUCT.md ├── ISSUE_TEMPLATE │ ├── BUG_REPORT.md │ ├── DOCUMENTATION_IMPROVEMENT.md │ ├── FEATURE_REQUEST.md │ ├── OTHER.md │ ├── USAGE_QUESTION.md │ └── config.yml ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── linter.yml │ ├── publish.yaml │ └── python-package-conda.yml ├── .gitignore ├── .pep8speaks.yml ├── .pre-commit-config.yaml ├── LICENSE-BSD3.txt ├── LICENSE-CC-BY.txt ├── MANIFEST.in ├── README.md ├── docs ├── custom_theme │ ├── 404.html │ ├── __init__.py │ ├── base.html │ ├── content.html │ ├── css │ │ ├── base.css │ │ ├── bootstrap-custom.css │ │ ├── bootstrap-custom.min.css │ │ ├── cinder.css │ │ ├── font-awesome-4.0.3.css │ │ └── highlight.css │ ├── fonts │ │ ├── fontawesome-webfont.eot │ │ ├── fontawesome-webfont.svg │ │ ├── fontawesome-webfont.ttf │ │ └── fontawesome-webfont.woff │ ├── img │ │ ├── favicon.ico │ │ ├── grid1.png │ │ ├── grid10.png │ │ ├── grid11.png │ │ ├── grid12.png │ │ ├── grid13.png │ │ ├── grid14.png │ │ ├── grid15.png │ │ ├── grid16.png │ │ ├── grid17.png │ │ ├── grid18.png │ │ ├── grid19.png │ │ ├── grid2.png │ │ ├── grid20.png │ │ ├── grid3.png │ │ ├── grid4.png │ │ ├── grid5.png │ │ ├── grid6.png │ │ ├── grid7.png │ │ ├── grid8.png │ │ └── grid9.png │ ├── js │ │ ├── base.js │ │ ├── bootstrap-3.0.3.min.js │ │ ├── highlight.pack.js │ │ └── jquery-1.10.2.min.js │ ├── main.html │ ├── mkdocs_theme.yml │ ├── nav-sub.html │ ├── nav.html │ └── toc.html ├── favicon.ico ├── ipynb2markdown.py ├── make_api.py ├── make_userguide.py ├── md2pdf.py ├── mdx_math.py ├── mdx_math_setup.py ├── mkdocs.yml ├── pdftemplate.tex └── sources │ ├── CHANGELOG.md │ ├── CONTRIBUTING.md │ ├── Code-of-Conduct.md │ ├── USER-GUIDE-INDEX.md │ ├── USER_GUIDE_INDEX.md │ ├── cite.md │ ├── contributors.md │ ├── discuss.md │ ├── extra.css │ ├── img │ ├── contributing │ │ ├── fork.png │ │ ├── new_issue.png │ │ └── pull_request.png │ ├── ensemble_decision_regions_2d.png │ ├── logo.jpg │ ├── logo.pdf │ └── logo.png │ ├── index.md │ ├── installation.md │ ├── license.md │ ├── mathjaxhelper.js │ └── user_guide │ ├── classifier │ ├── Adaline.ipynb │ ├── Adaline_files │ │ ├── Adaline_15_0.png │ │ ├── Adaline_16_0.png │ │ ├── Adaline_17_1.png │ │ ├── Adaline_17_3.png │ │ ├── Adaline_18_0.png │ │ ├── Adaline_18_1.png │ │ ├── Adaline_18_3.png │ │ ├── Adaline_19_1.png │ │ ├── Adaline_19_2.png │ │ ├── Adaline_20_1.png │ │ ├── Adaline_20_2.png │ │ ├── Adaline_20_3.png │ │ ├── Adaline_21_1.png │ │ ├── Adaline_21_2.png │ │ ├── Adaline_22_1.png │ │ ├── Adaline_22_2.png │ │ ├── Adaline_24_1.png │ │ ├── Adaline_24_2.png │ │ └── adaline_schematic.png │ ├── EnsembleVoteClassifier.ipynb │ ├── EnsembleVoteClassifier_files │ │ ├── EnsembleVoteClassifier_24_0.png │ │ ├── EnsembleVoteClassifier_24_1.png │ │ ├── EnsembleVoteClassifier_25_0.png │ │ ├── EnsembleVoteClassifier_26_0.png │ │ ├── EnsembleVoteClassifier_27_0.png │ │ ├── majority_voting.png │ │ └── voting.png │ ├── LogisticRegression.ipynb │ ├── LogisticRegression_files │ │ ├── LogisticRegression_43_1.png │ │ ├── LogisticRegression_43_2.png │ │ ├── LogisticRegression_44_1.png │ │ ├── LogisticRegression_44_2.png │ │ ├── LogisticRegression_46_1.png │ │ ├── LogisticRegression_46_2.png │ │ ├── LogisticRegression_49_1.png │ │ ├── LogisticRegression_49_2.png │ │ ├── LogisticRegression_50_1.png │ │ ├── LogisticRegression_50_2.png │ │ ├── LogisticRegression_52_1.png │ │ ├── LogisticRegression_52_2.png │ │ ├── LogisticRegression_55_1.png │ │ ├── LogisticRegression_55_2.png │ │ ├── logistic_cost.png │ │ ├── logistic_function.png │ │ └── logistic_regression_schematic.png │ ├── MultiLayerPerceptron.ipynb │ ├── MultiLayerPerceptron_files │ │ ├── MultiLayerPerceptron_23_0.png │ │ ├── MultiLayerPerceptron_24_0.png │ │ ├── MultiLayerPerceptron_25_0.png │ │ ├── MultiLayerPerceptron_26_0.png │ │ ├── MultiLayerPerceptron_27_0.png │ │ ├── MultiLayerPerceptron_28_1.png │ │ ├── MultiLayerPerceptron_29_1.png │ │ ├── MultiLayerPerceptron_31_0.png │ │ ├── MultiLayerPerceptron_31_1.png │ │ ├── MultiLayerPerceptron_32_0.png │ │ ├── MultiLayerPerceptron_34_0.png │ │ ├── MultiLayerPerceptron_36_0.png │ │ ├── MultiLayerPerceptron_37_0.png │ │ ├── MultiLayerPerceptron_39_0.png │ │ ├── MultiLayerPerceptron_42_1.png │ │ ├── MultiLayerPerceptron_43_1.png │ │ └── MultiLayerPerceptron_45_1.png │ ├── NeuralNetMLP_files │ │ ├── NeuralNetMLP_26_1.png │ │ ├── NeuralNetMLP_27_0.png │ │ ├── NeuralNetMLP_28_1.png │ │ ├── NeuralNetMLP_30_0.png │ │ ├── NeuralNetMLP_33_0.png │ │ ├── NeuralNetMLP_36_0.png │ │ ├── NeuralNetMLP_38_0.png │ │ ├── NeuralNetMLP_43_0.png │ │ ├── NeuralNetMLP_49_1.png │ │ ├── logistic_function.png │ │ └── neuralnet_mlp_1.png │ ├── OneRClassifier.ipynb │ ├── Perceptron.ipynb │ ├── Perceptron_files │ │ ├── Perceptron_22_1.png │ │ ├── Perceptron_22_3.png │ │ ├── Perceptron_23_1.png │ │ ├── Perceptron_23_3.png │ │ ├── Perceptron_25_1.png │ │ ├── Perceptron_25_3.png │ │ └── perceptron_schematic.png │ ├── SoftmaxRegression.ipynb │ ├── SoftmaxRegression_files │ │ ├── SoftmaxRegression_31_1.png │ │ ├── SoftmaxRegression_31_2.png │ │ ├── SoftmaxRegression_32_1.png │ │ ├── SoftmaxRegression_32_2.png │ │ ├── SoftmaxRegression_33_0.png │ │ ├── SoftmaxRegression_33_1.png │ │ ├── SoftmaxRegression_34_0.png │ │ ├── SoftmaxRegression_34_1.png │ │ ├── SoftmaxRegression_34_2.png │ │ ├── SoftmaxRegression_37_0.png │ │ ├── SoftmaxRegression_37_1.png │ │ ├── SoftmaxRegression_38_0.png │ │ ├── SoftmaxRegression_38_1.png │ │ ├── SoftmaxRegression_39_0.png │ │ ├── SoftmaxRegression_39_1.png │ │ ├── SoftmaxRegression_40_0.png │ │ ├── SoftmaxRegression_40_1.png │ │ ├── SoftmaxRegression_44_0.png │ │ ├── SoftmaxRegression_44_1.png │ │ ├── logistic_regression_schematic.png │ │ └── softmax_schematic_1.png │ ├── StackingCVClassifier.ipynb │ ├── StackingCVClassifier_files │ │ ├── StackingCVClassifier_13_0.png │ │ ├── StackingCVClassifier_14_0.png │ │ ├── StackingCVClassifier_16_0.png │ │ ├── StackingCVClassifier_30_0.png │ │ ├── StackingCVClassifier_32_0.png │ │ ├── stacking_cv_algorithm.png │ │ └── stacking_cv_classification_overview.png │ ├── StackingCVRegressor_files │ │ └── stacking_cv_regressor_overview.png │ ├── StackingClassifier.ipynb │ └── StackingClassifier_files │ │ ├── StackingClassifier_13_0.png │ │ ├── StackingClassifier_14_0.png │ │ ├── StackingClassifier_16_0.png │ │ ├── StackingClassifier_17_0.png │ │ ├── StackingClassifier_31_0.png │ │ ├── StackingClassifier_33_0.png │ │ ├── StackingClassifier_37_0.png │ │ ├── StackingClassifier_39_0.png │ │ ├── stacking_algorithm.png │ │ └── stackingclassification_overview.png │ ├── cluster │ ├── Kmeans.ipynb │ └── Kmeans_files │ │ ├── Kmeans_10_0.png │ │ ├── Kmeans_11_0.png │ │ ├── Kmeans_13_0.png │ │ ├── Kmeans_14_0.png │ │ ├── Kmeans_15_0.png │ │ └── Kmeans_17_0.png │ ├── data │ ├── autompg_data.ipynb │ ├── boston_housing_data.ipynb │ ├── iris_data.ipynb │ ├── loadlocal_mnist.ipynb │ ├── make_multiplexer_dataset.ipynb │ ├── make_multiplexer_dataset_data_files │ │ ├── 6bit_multiplexer.pdf │ │ └── 6bit_multiplexer.png │ ├── mnist_data.ipynb │ ├── mnist_data_files │ │ ├── mnist_data_10_0.png │ │ ├── mnist_data_11_0.png │ │ └── mnist_data_13_0.png │ ├── three_blobs_data.ipynb │ ├── three_blobs_data_files │ │ ├── three_blobs_data_10_0.png │ │ ├── three_blobs_data_11_0.png │ │ ├── three_blobs_data_12_0.png │ │ ├── three_blobs_data_13_0.png │ │ └── three_blobs_data_14_0.png │ └── wine_data.ipynb │ ├── evaluate │ ├── BootstrapOutOfBag.ipynb │ ├── BootstrapOutOfBag_files │ │ ├── BootstrapOutOfBag_16_0.png │ │ └── bootstrap_concept.png │ ├── GroupTimeSeriesSplit.ipynb │ ├── GroupTimeSeriesSplit_files │ │ ├── GroupTimeSeriesSplit_22_0.png │ │ ├── GroupTimeSeriesSplit_24_0.png │ │ ├── GroupTimeSeriesSplit_30_0.png │ │ └── GroupTimeSeriesSplit_36_0.png │ ├── PredefinedHoldoutSplit.ipynb │ ├── RandomHoldoutSplit.ipynb │ ├── accuracy_score.ipynb │ ├── bias_variance_decomp.ipynb │ ├── bias_variance_decomp_files │ │ ├── high-bias-plot.png │ │ ├── image-20181029010428686.png │ │ └── varianceplot.png │ ├── bootstrap.ipynb │ ├── bootstrap_point632_score.ipynb │ ├── cochrans_q.ipynb │ ├── combined_ftest_5x2cv.ipynb │ ├── confusion_matrix.ipynb │ ├── confusion_matrix_files │ │ ├── confusion_matrix_1.png │ │ ├── confusion_matrix_12_0.png │ │ ├── confusion_matrix_13_0.png │ │ ├── confusion_matrix_14_0.png │ │ ├── confusion_matrix_15_0.png │ │ ├── confusion_matrix_16_0.png │ │ ├── confusion_matrix_17_0.png │ │ ├── confusion_matrix_19_0.png │ │ ├── confusion_matrix_21_0.png │ │ ├── confusion_matrix_22_0.png │ │ └── confusion_matrix_24_0.png │ ├── create_counterfactual.ipynb │ ├── create_counterfactual_files │ │ ├── create_counterfactual_16_0.png │ │ ├── create_counterfactual_18_0.png │ │ ├── create_counterfactual_21_0.png │ │ ├── create_counterfactual_21_1.png │ │ ├── create_counterfactual_21_2.png │ │ ├── create_counterfactual_21_3.png │ │ ├── create_counterfactual_21_4.png │ │ └── create_counterfactual_24_1.png │ ├── feature_importance_permutation.ipynb │ ├── feature_importance_permutation_files │ │ ├── feature_importance_permutation_17_0.png │ │ ├── feature_importance_permutation_23_0.png │ │ ├── feature_importance_permutation_27_0.png │ │ ├── feature_importance_permutation_32_0.png │ │ ├── feature_importance_permutation_35_0.png │ │ ├── feature_importance_permutation_52_0.png │ │ └── feature_importance_permutation_57_0.png │ ├── ftest.ipynb │ ├── lift_score.ipynb │ ├── lift_score_files │ │ └── lift_cm_1.png │ ├── mcnemar.ipynb │ ├── mcnemar_files │ │ ├── mcnemar_scenario_a.png │ │ └── mcnemar_scenario_b.png │ ├── mcnemar_table.ipynb │ ├── mcnemar_table_files │ │ ├── mcnemar_contingency_table.png │ │ ├── mcnemar_contingency_table_ex1.png │ │ ├── mcnemar_table_13_0.png │ │ └── mcnemar_table_14_0.png │ ├── mcnemar_tables.ipynb │ ├── mcnemar_tables_files │ │ ├── mcnemar_contingency_table.png │ │ ├── mcnemar_contingency_table_ex1.png │ │ ├── mcnemar_table_13_0.png │ │ ├── mcnemar_table_14_0.png │ │ └── mcnemar_tables_13_0.png │ ├── paired_ttest_5x2cv.ipynb │ ├── paired_ttest_kfold_cv.ipynb │ ├── paired_ttest_resampled.ipynb │ ├── permutation_test.ipynb │ ├── proportion_difference.ipynb │ ├── scoring.ipynb │ └── scoring_files │ │ ├── conf_mat_binary-1.png │ │ ├── conf_mat_multi-1.png │ │ └── multi-ex-1.png │ ├── feature_extraction │ ├── LinearDiscriminantAnalysis.ipynb │ ├── LinearDiscriminantAnalysis_files │ │ ├── LinearDiscriminantAnalysis_11_0.png │ │ ├── LinearDiscriminantAnalysis_12_0.png │ │ ├── LinearDiscriminantAnalysis_14_0.png │ │ ├── LinearDiscriminantAnalysis_15_0.png │ │ ├── LinearDiscriminantAnalysis_16_0.png │ │ └── LinearDiscriminantAnalysis_18_0.png │ ├── PrincipalComponentAnalysis.ipynb │ ├── PrincipalComponentAnalysis_files │ │ ├── PrincipalComponentAnalysis_11_0.png │ │ ├── PrincipalComponentAnalysis_12_0.png │ │ ├── PrincipalComponentAnalysis_14_0.png │ │ ├── PrincipalComponentAnalysis_15_0.png │ │ ├── PrincipalComponentAnalysis_16_0.png │ │ ├── PrincipalComponentAnalysis_17_0.png │ │ ├── PrincipalComponentAnalysis_18_0.png │ │ ├── PrincipalComponentAnalysis_19_0.png │ │ ├── PrincipalComponentAnalysis_20_0.png │ │ ├── PrincipalComponentAnalysis_21_0.png │ │ ├── PrincipalComponentAnalysis_22_0.png │ │ ├── PrincipalComponentAnalysis_24_0.png │ │ ├── PrincipalComponentAnalysis_26_0.png │ │ ├── PrincipalComponentAnalysis_33_0.png │ │ ├── PrincipalComponentAnalysis_35_0.png │ │ ├── PrincipalComponentAnalysis_37_0.png │ │ └── PrincipalComponentAnalysis_39_0.png │ ├── RBFKernelPCA.ipynb │ └── RBFKernelPCA_files │ │ ├── RBFKernelPCA_15_0.png │ │ ├── RBFKernelPCA_16_0.png │ │ ├── RBFKernelPCA_17_0.png │ │ ├── RBFKernelPCA_18_0.png │ │ ├── RBFKernelPCA_20_0.png │ │ ├── RBFKernelPCA_22_0.png │ │ ├── RBFKernelPCA_23_0.png │ │ ├── RBFKernelPCA_24_0.png │ │ ├── RBFKernelPCA_25_0.png │ │ ├── RBFKernelPCA_27_0.png │ │ ├── RBFKernelPCA_28_0.png │ │ ├── RBFKernelPCA_29_0.png │ │ ├── RBFKernelPCA_31_0.png │ │ ├── RBFKernelPCA_32_0.png │ │ ├── RBFKernelPCA_33_0.png │ │ ├── RBFKernelPCA_34_0.png │ │ ├── RBFKernelPCA_35_0.png │ │ ├── RBFKernelPCA_36_0.png │ │ ├── RBFKernelPCA_37_0.png │ │ ├── linear_vs_nonlinear.png │ │ └── pca_1.png │ ├── feature_selection │ ├── ColumnSelector.ipynb │ ├── ExhaustiveFeatureSelector.ipynb │ ├── ExhaustiveFeatureSelector_files │ │ ├── ExhaustiveFeatureSelector_15_0.png │ │ ├── ExhaustiveFeatureSelector_16_0.png │ │ ├── ExhaustiveFeatureSelector_18_0.png │ │ ├── ExhaustiveFeatureSelector_19_0.png │ │ ├── ExhaustiveFeatureSelector_22_0.png │ │ └── ExhaustiveFeatureSelector_23_0.png │ ├── SequentialFeatureSelector.ipynb │ └── SequentialFeatureSelector_files │ │ ├── SequentialFeatureSelector_39_1.png │ │ ├── SequentialFeatureSelector_40_1.png │ │ ├── SequentialFeatureSelector_42_0.png │ │ ├── SequentialFeatureSelector_42_1.png │ │ ├── SequentialFeatureSelector_43_1.png │ │ ├── SequentialFeatureSelector_44_1.png │ │ ├── SequentialFeatureSelector_46_0.png │ │ ├── SequentialFeatureSelector_47_0.png │ │ ├── SequentialFeatureSelector_49_1.png │ │ ├── SequentialFeatureSelector_50_1.png │ │ ├── SequentialFeatureSelector_52_0.png │ │ ├── SequentialFeatureSelector_53_0.png │ │ ├── SequentialFeatureSelector_55_0.png │ │ ├── SequentialFeatureSelector_69_1.png │ │ ├── SequentialFeatureSelector_69_2.png │ │ ├── SequentialFeatureSelector_70_1.png │ │ ├── SequentialFeatureSelector_70_2.png │ │ ├── SequentialFeatureSelector_74_1.png │ │ ├── SequentialFeatureSelector_75_1.png │ │ ├── SequentialFeatureSelector_76_1.png │ │ ├── SequentialFeatureSelector_77_1.png │ │ ├── SequentialFeatureSelector_80_1.png │ │ ├── SequentialFeatureSelector_81_1.png │ │ ├── SequentialFeatureSelector_82_1.png │ │ ├── feature_groups.jpeg │ │ ├── feature_groups.key │ │ └── sbs-gpcr2020.png │ ├── file_io │ ├── data_find_filegroups │ │ ├── dir_1 │ │ │ ├── file_1.log │ │ │ ├── file_2.log │ │ │ └── file_3.log │ │ ├── dir_2 │ │ │ ├── file_1.csv │ │ │ ├── file_2.csv │ │ │ └── file_3.csv │ │ └── dir_3 │ │ │ ├── file_1.txt │ │ │ ├── file_2.txt │ │ │ └── file_3.txt │ ├── find_filegroups.ipynb │ └── find_files.ipynb │ ├── frequent_patterns │ ├── apriori.ipynb │ ├── association_rules.ipynb │ ├── fpgrowth.ipynb │ ├── fpmax.ipynb │ └── hmine.ipynb │ ├── math │ ├── num_combinations.ipynb │ ├── num_permutations.ipynb │ ├── vectorspace_dimensionality.ipynb │ └── vectorspace_orthonormalization.ipynb │ ├── plotting │ ├── category_scatter.ipynb │ ├── category_scatter_files │ │ ├── category_scatter_10_0.png │ │ ├── category_scatter_11_0.png │ │ ├── category_scatter_13_0.png │ │ ├── category_scatter_14_0.png │ │ ├── category_scatter_15_0.png │ │ └── category_scatter_9_0.png │ ├── checkerboard_plot.ipynb │ ├── checkerboard_plot_files │ │ ├── checkerboard_plot_10_0.png │ │ ├── checkerboard_plot_11_0.png │ │ ├── checkerboard_plot_8_0.png │ │ └── checkerboard_plot_9_0.png │ ├── ecdf.ipynb │ ├── ecdf_files │ │ ├── ecdf_10_0.png │ │ ├── ecdf_12_0.png │ │ └── ecdf_8_0.png │ ├── enrichment_plot.ipynb │ ├── enrichment_plot_files │ │ ├── enrichment_plot_10_0.png │ │ ├── enrichment_plot_11_0.png │ │ └── enrichment_plot_12_0.png │ ├── heatmap.ipynb │ ├── heatmap_files │ │ ├── heatmap_10_0.png │ │ ├── heatmap_11_0.png │ │ ├── heatmap_13_0.png │ │ └── heatmap_8_0.png │ ├── plot_confusion_matrix.ipynb │ ├── plot_confusion_matrix_files │ │ ├── plot_confusion_matrix_10_0.png │ │ ├── plot_confusion_matrix_11_0.png │ │ ├── plot_confusion_matrix_11_1.png │ │ ├── plot_confusion_matrix_12_0.png │ │ ├── plot_confusion_matrix_13_0.png │ │ ├── plot_confusion_matrix_13_1.png │ │ ├── plot_confusion_matrix_14_0.png │ │ ├── plot_confusion_matrix_15_0.png │ │ ├── plot_confusion_matrix_15_1.png │ │ ├── plot_confusion_matrix_16_0.png │ │ ├── plot_confusion_matrix_19_0.png │ │ ├── plot_confusion_matrix_21_0.png │ │ ├── plot_confusion_matrix_24_0.png │ │ ├── plot_confusion_matrix_26_0.png │ │ ├── plot_confusion_matrix_9_0.png │ │ └── plot_confusion_matrix_9_1.png │ ├── plot_decision_regions.ipynb │ ├── plot_decision_regions_files │ │ ├── plot_decision_regions_11_0.png │ │ ├── plot_decision_regions_11_1.png │ │ ├── plot_decision_regions_12_0.png │ │ ├── plot_decision_regions_13_0.png │ │ ├── plot_decision_regions_14_0.png │ │ ├── plot_decision_regions_15_0.png │ │ ├── plot_decision_regions_16_0.png │ │ ├── plot_decision_regions_17_0.png │ │ ├── plot_decision_regions_19_0.png │ │ ├── plot_decision_regions_19_1.png │ │ ├── plot_decision_regions_20_0.png │ │ ├── plot_decision_regions_21_0.png │ │ ├── plot_decision_regions_21_1.png │ │ ├── plot_decision_regions_22_0.png │ │ ├── plot_decision_regions_23_0.png │ │ ├── plot_decision_regions_23_1.png │ │ ├── plot_decision_regions_24_0.png │ │ ├── plot_decision_regions_25_0.png │ │ ├── plot_decision_regions_25_1.png │ │ ├── plot_decision_regions_26_0.png │ │ ├── plot_decision_regions_27_0.png │ │ ├── plot_decision_regions_27_1.png │ │ ├── plot_decision_regions_29_0.png │ │ ├── plot_decision_regions_29_1.png │ │ ├── plot_decision_regions_31_0.png │ │ ├── plot_decision_regions_34_0.png │ │ ├── plot_decision_regions_38_0.png │ │ ├── plot_decision_regions_40_0.png │ │ ├── plot_decision_regions_43_0.png │ │ ├── plot_decision_regions_46_0.png │ │ ├── plot_decision_regions_52_0.png │ │ ├── plot_decision_regions_52_1.png │ │ ├── plot_decision_regions_6_0.png │ │ ├── plot_decision_regions_7_0.png │ │ ├── plot_decision_regions_8_0.png │ │ └── plot_decision_regions_9_0.png │ ├── plot_learning_curves.ipynb │ ├── plot_learning_curves_files │ │ ├── plot_learning_curves_6_0.png │ │ ├── plot_learning_curves_7_0.png │ │ ├── plot_learning_curves_8_0.png │ │ └── plot_learning_curves_9_0.png │ ├── plot_linear_regression.ipynb │ ├── plot_linear_regression_files │ │ ├── plot_linear_regression_11_0.png │ │ ├── plot_linear_regression_8_0.png │ │ └── plot_linear_regression_9_0.png │ ├── plot_pca_correlated_circle_files │ │ └── plot_pca_correlated_circle_6_0.png │ ├── plot_pca_correlation_graph.ipynb │ ├── plot_pca_correlation_graph_files │ │ ├── plot_pca_correlation_graph_6_0.png │ │ └── plot_pca_correlation_graph_7_0.png │ ├── plot_sequential_feature_selection.ipynb │ ├── plot_sequential_feature_selection_files │ │ ├── plot_sequential_feature_selection_10_1.png │ │ ├── plot_sequential_feature_selection_7_0.png │ │ ├── plot_sequential_feature_selection_7_1.png │ │ └── plot_sequential_feature_selection_8_1.png │ ├── scatter_hist.ipynb │ ├── scatter_hist_files │ │ ├── scatter_hist_11_0.png │ │ ├── scatter_hist_8_0.png │ │ ├── scatter_hist_dataframe.png │ │ └── scatter_hist_numpyarray.png │ ├── scatterplotmatrix.ipynb │ ├── scatterplotmatrix_files │ │ ├── scatterplotmatrix_10_0.png │ │ └── scatterplotmatrix_8_0.png │ ├── stacked_barplot.ipynb │ └── stacked_barplot_files │ │ ├── stacked_barplot_10_0.png │ │ ├── stacked_barplot_11_0.png │ │ └── stacked_barplot_13_0.png │ ├── preprocessing │ ├── CopyTransformer.ipynb │ ├── DenseTransformer.ipynb │ ├── MeanCenterer.ipynb │ ├── TransactionEncoder.ipynb │ ├── minmax_scaling.ipynb │ ├── one-hot_encoding.ipynb │ ├── shuffle_arrays_unison.ipynb │ └── standardize.ipynb │ ├── regressor │ ├── LinearRegression.ipynb │ ├── LinearRegression_files │ │ ├── LinearRegression_13_1.png │ │ ├── LinearRegression_14_1.png │ │ ├── LinearRegression_15_1.png │ │ ├── LinearRegression_15_2.png │ │ ├── LinearRegression_16_0.png │ │ ├── LinearRegression_16_1.png │ │ ├── LinearRegression_16_2.png │ │ ├── LinearRegression_17_0.png │ │ ├── LinearRegression_17_1.png │ │ ├── LinearRegression_17_2.png │ │ ├── LinearRegression_18_0.png │ │ ├── LinearRegression_18_1.png │ │ ├── LinearRegression_19_0.png │ │ ├── LinearRegression_19_1.png │ │ ├── LinearRegression_19_2.png │ │ ├── LinearRegression_20_0.png │ │ ├── LinearRegression_20_1.png │ │ ├── LinearRegression_21_0.png │ │ ├── LinearRegression_21_1.png │ │ ├── LinearRegression_22_0.png │ │ ├── LinearRegression_22_1.png │ │ ├── LinearRegression_22_2.png │ │ ├── LinearRegression_23_0.png │ │ ├── LinearRegression_23_1.png │ │ ├── LinearRegression_24_0.png │ │ ├── LinearRegression_24_1.png │ │ ├── LinearRegression_25_0.png │ │ ├── LinearRegression_25_1.png │ │ ├── LinearRegression_26_0.png │ │ ├── LinearRegression_27_1.png │ │ ├── LinearRegression_28_0.png │ │ ├── LinearRegression_28_1.png │ │ ├── LinearRegression_29_0.png │ │ └── simple_regression.png │ ├── StackingCVRegressor.ipynb │ ├── StackingCVRegressor_files │ │ └── stacking_cv_regressor_overview.png │ ├── StackingRegressor.ipynb │ └── StackingRegressor_files │ │ ├── StackingRegressor_11_1.png │ │ ├── StackingRegressor_12_1.png │ │ ├── StackingRegressor_14_1.png │ │ ├── StackingRegressor_16_1.png │ │ ├── StackingRegressor_17_1.png │ │ ├── StackingRegressor_18_1.png │ │ ├── StackingRegressor_19_1.png │ │ └── stackingregression_overview.png │ ├── text │ ├── generalize_names.ipynb │ ├── generalize_names_duplcheck.ipynb │ └── tokenizer.ipynb │ └── utils │ └── Counter.ipynb ├── environment.yml ├── files.txt ├── mlxtend ├── __init__.py ├── _base │ ├── __init__.py │ ├── _base_model.py │ ├── _classifier.py │ ├── _cluster.py │ ├── _iterative_model.py │ ├── _multiclass.py │ ├── _multilayer.py │ ├── _regressor.py │ └── tests │ │ ├── test_base_model.py │ │ ├── test_classifier.py │ │ ├── test_cluster.py │ │ ├── test_iterative_model.py │ │ ├── test_multiclass.py │ │ ├── test_multilayer.py │ │ └── test_regressor.py ├── classifier │ ├── __init__.py │ ├── _base_classification.py │ ├── adaline.py │ ├── ensemble_vote.py │ ├── logistic_regression.py │ ├── multilayerperceptron.py │ ├── oner.py │ ├── perceptron.py │ ├── softmax_regression.py │ ├── stacking_classification.py │ ├── stacking_cv_classification.py │ └── tests │ │ ├── test_adaline.py │ │ ├── test_ensemble_vote_classifier.py │ │ ├── test_logistic_regression.py │ │ ├── test_multilayerperceptron.py │ │ ├── test_oner.py │ │ ├── test_perceptron.py │ │ ├── test_softmax_regression.py │ │ ├── test_stacking_classifier.py │ │ └── test_stacking_cv_classifier.py ├── cluster │ ├── __init__.py │ ├── kmeans.py │ └── tests │ │ └── test_kmeans.py ├── data │ ├── __init__.py │ ├── autompg.py │ ├── boston_housing.py │ ├── data │ │ ├── autompg.csv.gz │ │ ├── boston_housing.csv │ │ ├── iris.csv.gz │ │ ├── mnist_5k.csv.gz │ │ ├── three_blobs.csv.gz │ │ └── wine.csv │ ├── iris.py │ ├── local_mnist.py │ ├── mnist.py │ ├── multiplexer.py │ ├── tests │ │ ├── test_datasets.py │ │ ├── test_iris.py │ │ └── test_multiplexer.py │ ├── three_blobs.py │ └── wine.py ├── evaluate │ ├── __init__.py │ ├── accuracy.py │ ├── bias_variance_decomp.py │ ├── bootstrap.py │ ├── bootstrap_outofbag.py │ ├── bootstrap_point632.py │ ├── cochrans_q.py │ ├── confusion_matrix.py │ ├── counterfactual.py │ ├── f_test.py │ ├── feature_importance.py │ ├── holdout.py │ ├── lift_score.py │ ├── mcnemar.py │ ├── permutation.py │ ├── proportion_difference.py │ ├── scoring.py │ ├── tests │ │ ├── test_accuracy.py │ │ ├── test_bias_variance_decomp.py │ │ ├── test_bootstrap.py │ │ ├── test_bootstrap_outofbag.py │ │ ├── test_bootstrap_point632.py │ │ ├── test_cochran_q.py │ │ ├── test_combined_ftest_5x2cv.py │ │ ├── test_confusion_matrix.py │ │ ├── test_counterfactual.py │ │ ├── test_f_test.py │ │ ├── test_feature_importance.py │ │ ├── test_holdout.py │ │ ├── test_lift_score.py │ │ ├── test_mcnemar_table.py │ │ ├── test_mcnemar_tables.py │ │ ├── test_mcnemar_test.py │ │ ├── test_paired_ttest_5x2cv.py │ │ ├── test_paired_ttest_kfold.py │ │ ├── test_paired_ttest_resampled.py │ │ ├── test_permutation.py │ │ ├── test_proportion_difference.py │ │ ├── test_scoring.py │ │ └── test_time_series.py │ ├── time_series.py │ └── ttest.py ├── externals │ ├── __init__.py │ ├── adjust_text.py │ ├── estimator_checks.py │ ├── name_estimators.py │ ├── pyprind │ │ ├── __init__.py │ │ ├── generator_factory.py │ │ ├── prog_class.py │ │ ├── progbar.py │ │ └── progpercent.py │ └── signature_py27.py ├── feature_extraction │ ├── __init__.py │ ├── base.py │ ├── linear_discriminant_analysis.py │ ├── principal_component_analysis.py │ ├── rbf_kernel_pca.py │ └── tests │ │ ├── test_base.py │ │ ├── test_kernel_pca.py │ │ ├── test_linear_discriminant_analysis.py │ │ └── test_principal_component_analysis.py ├── feature_selection │ ├── __init__.py │ ├── column_selector.py │ ├── exhaustive_feature_selector.py │ ├── sequential_feature_selector.py │ ├── tests │ │ ├── test_column_selector.py │ │ ├── test_exhaustive_feature_selector.py │ │ ├── test_sequential_feature_selector.py │ │ ├── test_sequential_feature_selector_feature_groups.py │ │ └── test_sequential_feature_selector_fixed_features.py │ └── utilities.py ├── file_io │ ├── __init__.py │ ├── find_filegroups.py │ └── find_files.py ├── frequent_patterns │ ├── __init__.py │ ├── apriori.py │ ├── association_rules.py │ ├── fpcommon.py │ ├── fpgrowth.py │ ├── fpmax.py │ ├── hmine.py │ └── tests │ │ ├── test_apriori.py │ │ ├── test_association_rules.py │ │ ├── test_fpbase.py │ │ ├── test_fpgrowth.py │ │ ├── test_fpmax.py │ │ └── test_hmine.py ├── math │ ├── __init__.py │ ├── counting.py │ ├── linalg.py │ └── tests │ │ ├── test_counting.py │ │ └── test_linalg.py ├── plotting │ ├── __init__.py │ ├── checkerboard.py │ ├── decision_regions.py │ ├── ecdf.py │ ├── enrichment_plot.py │ ├── heatmap.py │ ├── learning_curves.py │ ├── pca_correlation_graph.py │ ├── plot_confusion_matrix.py │ ├── plot_linear_regression.py │ ├── plot_sequential_feature_selection.py │ ├── remove_chartjunk.py │ ├── scatter.py │ ├── scatter_hist.py │ ├── scatterplotmatrix.py │ ├── stacked_barplot.py │ └── tests │ │ ├── data │ │ └── data.csv │ │ ├── test_checkerboard.py │ │ ├── test_decision_regions.py │ │ ├── test_ecdf.py │ │ ├── test_heatmap.py │ │ ├── test_learning_curves.py │ │ ├── test_pca_corr_graph.py │ │ └── test_scatter_hist.py ├── preprocessing │ ├── __init__.py │ ├── copy_transformer.py │ ├── dense_transformer.py │ ├── mean_centering.py │ ├── onehot.py │ ├── scaling.py │ ├── shuffle.py │ ├── tests │ │ ├── test__scaling__minmax_scaling.py │ │ ├── test__scaling__standardizing.py │ │ ├── test_copy_transformer.py │ │ ├── test_dense_transformer.py │ │ ├── test_mean_centering.py │ │ ├── test_onehot.py │ │ ├── test_shuffle_shuffle_arrays_unison.py │ │ └── test_transactionencoder.py │ └── transactionencoder.py ├── regressor │ ├── __init__.py │ ├── linear_regression.py │ ├── stacking_cv_regression.py │ ├── stacking_regression.py │ └── tests │ │ ├── test_linear_regression.py │ │ ├── test_stacking_cv_regression.py │ │ └── test_stacking_regression.py ├── text │ ├── __init__.py │ ├── names.py │ ├── tests │ │ ├── data_names.py │ │ ├── test_generalize_names.py │ │ ├── test_generalize_names_duplcheck.py │ │ └── test_tokenizer.py │ └── tokenizer.py └── utils │ ├── __init__.py │ ├── base_compostion.py │ ├── checking.py │ ├── counter.py │ ├── testing.py │ └── tests │ ├── test_checking_inputs.py │ ├── test_counter.py │ └── test_testing.py ├── oryx-build-commands.txt ├── paper.bib ├── paper.md ├── 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