├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ └── update-citation-cff.yaml ├── .gitignore ├── CITATION.cff ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── HYPEtools-package.R ├── class_HypeGeoData.R ├── class_HypeMultiVar.R ├── class_HypeSingleVar.R ├── class_HypeXobs.R ├── distinctColorPalette.R ├── function_AllDownstreamSubids.R ├── function_AllUpstreamSubids.R ├── function_AnnualRegime.R ├── function_BarplotUpstreamClasses.R ├── function_BoxplotSLCClasses.R ├── function_CleanSLCClasses.R ├── function_CompareFiles.R ├── function_ConvertDischarge.R ├── function_CreateOptpar.R ├── function_DirectUpstreamSubids.R ├── function_EquallySpacedObs.R ├── function_ExtractFreq.R ├── function_ExtractStats.R ├── function_GroupSLCClasses.R ├── function_GwRetention.R ├── function_HeadwaterSubids.R ├── function_InfoManipulation.R ├── function_MapRegionalSources.R ├── function_MergeObs.R ├── function_MergeXobs.R ├── function_OptimisedClasses.R ├── function_OutletIds.R ├── function_OutletNearObs.R ├── function_OutletSubids.R ├── function_PartyParrot.R ├── function_PlotAnnualRegime.R ├── function_PlotBasinOutput.R ├── function_PlotBasinSummary.R ├── function_PlotDurationCurve.R ├── function_PlotEvaluationMaps.R ├── function_PlotMapOutput.R ├── function_PlotMapPoints.R ├── function_PlotPerformanceByAttribute.R ├── function_PlotSimObsRegime.R ├── function_PlotSubbasinRouting.R ├── function_ReadWsOutput.R ├── function_RescaleSLCClasses.R ├── function_RunHYPE.R ├── function_ScaleAquiferData.R ├── function_ScaleFloodData.R ├── function_ScalePar.R ├── function_SimToPar.R ├── function_SortGeoData.R ├── function_SubidAttributeSummary.R ├── function_SumSLCClasses.R ├── function_SumUpstreamArea.R ├── function_UpstreamGeoData.R ├── function_UpstreamGroupSLCClasses.R ├── function_UpstreamPointSources.R ├── function_UpstreamSLCClasses.R ├── function_VariableLookup.R ├── function_VisualizeMapOutput.R ├── function_VisualizeMapPoints.R ├── function_r.R ├── functioncollection_CustomColors.R ├── functioncollection_Harmonized.R ├── functioncollection_HypeAttrAccess.R ├── functioncollection_HypeSubidChecks.R ├── functioncollection_export.R ├── functioncollection_import.R ├── functioncollection_internal.R ├── methods_hydroGOF.R ├── sysdata.rda └── zzz.R ├── README.md ├── cran-comments.md ├── data-raw └── INTERNAL.hype.vars.R ├── inst ├── demo_model │ ├── AquiferData_Example.txt │ ├── ClassData.txt │ ├── FloodData_Example.txt │ ├── ForcKey.txt │ ├── GeoClass.txt │ ├── GeoData.txt │ ├── Pobs.txt │ ├── PointSourceData.txt │ ├── Qobs.txt │ ├── Tobs.txt │ ├── Xobs.txt │ ├── description.txt │ ├── filedir.txt │ ├── gis │ │ ├── Nytorp_centroids.gpkg │ │ ├── Nytorp_map.gpkg │ │ └── Nytorp_station.gpkg │ ├── info.txt │ ├── optpar.txt │ ├── par.txt │ ├── pmsf.txt │ └── results │ │ ├── 0003587.txt │ │ ├── bestsims.txt │ │ ├── mapCOUT.txt │ │ ├── mapCOUT_0000001.txt │ │ ├── mapCOUT_0000002.txt │ │ ├── mapCRUN.txt │ │ ├── mapEVAP.txt │ │ ├── mapROUT.txt │ │ ├── mapSM13.txt │ │ ├── mapSNOW.txt │ │ ├── mapSOIM.txt │ │ ├── mapTEMP.txt │ │ ├── simass.txt │ │ ├── subass1.txt │ │ └── timeCOUT.txt ├── visualize_map_output │ ├── server.R │ └── ui.R └── visualize_map_points │ ├── server.R │ └── ui.R ├── man ├── AllDownstreamSubids.Rd ├── AllUpstreamSubids.Rd ├── AnnualRegime.Rd ├── BarplotUpstreamClasses.Rd ├── BoxplotSLCClasses.Rd ├── CleanSLCClasses.Rd ├── CompareFiles.Rd ├── ConvertDischarge.Rd ├── CreateOptpar.Rd ├── CustomColors.Rd ├── DirectUpstreamSubids.Rd ├── EquallySpacedObs.Rd ├── ExtractFreq.Rd ├── ExtractStats.Rd ├── GOF.Rd ├── GroupSLCClasses.Rd ├── GwRetention.Rd ├── HYPEtools-package.Rd ├── HeadwaterSubids.Rd ├── HypeAttrAccess.Rd ├── HypeDataExport.Rd ├── HypeDataImport.Rd ├── HypeGeoData.Rd ├── HypeMultiVar.Rd ├── HypeSingleVar.Rd ├── HypeSubidChecks.Rd ├── HypeXobs.Rd ├── InfoManipulation.Rd ├── MapRegionalSources.Rd ├── MergeObs.Rd ├── MergeXobs.Rd ├── NSE.HypeSingleVar.Rd ├── OptimisedClasses.Rd ├── 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