├── .env.template ├── .github └── dependabot.yml ├── .gitignore ├── LICENSE ├── README.md ├── UMLS ├── semantic_groups.txt ├── semantic_types.txt └── subset │ ├── 2021AA │ └── META │ │ ├── MRCONSO.RRF │ │ ├── MRDEF.RRF │ │ ├── MRDOC.RRF │ │ ├── MRHIER.RRF │ │ ├── MRRANK.RRF │ │ ├── MRREL.RRF │ │ ├── MRSAB.RRF │ │ ├── MRSAT.RRF │ │ ├── MRSTY.RRF │ │ ├── SRDEF │ │ ├── SRSTR │ │ ├── SRSTRE1 │ │ └── SRSTRE2 │ ├── 2021AB │ └── META │ │ ├── MRCONSO.RRF │ │ ├── MRDEF.RRF │ │ ├── MRDOC.RRF │ │ ├── MRHIER.RRF │ │ ├── MRMAP.RRF │ │ ├── MRRANK.RRF │ │ ├── MRREL.RRF │ │ ├── MRSAB.RRF │ │ ├── MRSAT.RRF │ │ ├── MRSMAP.RRF │ │ ├── MRSTY.RRF │ │ ├── SRDEF │ │ ├── SRSTR │ │ ├── SRSTRE1 │ │ └── SRSTRE2 │ ├── 2022AA │ └── META │ │ ├── MRCONSO.RRF │ │ ├── MRDEF.RRF │ │ ├── MRDOC.RRF │ │ ├── MRHIER.RRF │ │ ├── MRMAP.RRF │ │ ├── MRRANK.RRF │ │ ├── MRREL.RRF │ │ ├── MRSAB.RRF │ │ ├── MRSAT.RRF │ │ ├── MRSMAP.RRF │ │ ├── MRSTY.RRF │ │ ├── SRDEF.pipe │ │ ├── SRSTR.pipe │ │ ├── SRSTRE1.pipe │ │ ├── SRSTRE2.pipe │ │ └── semantic_groups.pipe │ └── 2022AB │ └── META │ ├── MRCONSO.RRF │ ├── MRDEF.RRF │ ├── MRDOC.RRF │ ├── MRHIER.RRF │ ├── MRMAP.RRF │ ├── MRRANK.RRF │ ├── MRREL.RRF │ ├── MRSAB.RRF │ ├── MRSAT.RRF │ ├── MRSMAP.RRF │ ├── MRSTY.RRF │ ├── SRDEF.pipe │ ├── SRSTR.pipe │ ├── SRSTRE1.pipe │ ├── SRSTRE2.pipe │ └── semantic_groups.pipe ├── _config.yml ├── clinical_informatics_umls ├── __init__.py ├── create_nodes_edges.py ├── create_sqlite_db.py ├── edges_part2.py ├── neo2rdf.py ├── nodes_edges_part1.py └── umls_downloader.py ├── conf ├── 2021AA_subset_config.prop ├── 2021AB_subset_config.prop └── 2022AB_config.prop ├── cypher_queries ├── part0.cypher └── part1.cypher ├── databases ├── mysql │ ├── mysql_indexes.sql │ └── mysql_tables.sql └── postgres │ ├── psql_create_table.sql │ └── psql_index_keys.sql ├── docs ├── Makefile ├── make.bat └── source │ ├── conf.py │ └── index.rst ├── grass └── style.grass ├── images ├── 2022AB-full_directory.jpg ├── MetamorphoSys_progress.png ├── amino_acid_peptide_protein_to_root.png ├── call_db_schema_visualization.png ├── icd10cm_sameas_snomedctus.png ├── neo4j_graph_sample_transformed_to_rdf.png ├── schema.png ├── schema_dark.png ├── semantic_network_olaparib.png ├── snomed_mapped_from_icd10cm.png └── welcome_to_metamorphosys.png ├── notebooks ├── part0_indexing_constraints.ipynb └── umls_graph_create.ipynb ├── output_data ├── neo2rdf.ttl ├── neo2rdf_test.ttl ├── neo4j_to_rdf_serialization.ttl ├── neo4j_to_turtle_serialization.ttl ├── sample_neo4j_to_rdf_serialization.rdf ├── sample_neo4j_to_rdf_serialization.ttl ├── testing.n3 ├── testing.ttl ├── v0_neo4j_umls_graph_mapped_to_rdf_sample.rdf └── v0_neo4j_umls_graph_to_RDF_sample_triples.csv ├── poetry.lock ├── pyproject.toml ├── sqlite └── create_sqlite_db.sh └── umls_user_guide └── MetamorphoSys_101.md /.env.template: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/.env.template -------------------------------------------------------------------------------- /.github/dependabot.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/.github/dependabot.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/README.md -------------------------------------------------------------------------------- /UMLS/semantic_groups.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/UMLS/semantic_groups.txt -------------------------------------------------------------------------------- /UMLS/semantic_types.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/UMLS/semantic_types.txt -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRCONSO.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRDEF.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRDOC.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRHIER.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRRANK.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRREL.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRSAB.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRSAT.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/MRSTY.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/SRDEF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/SRSTR: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/SRSTRE1: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AA/META/SRSTRE2: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRCONSO.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRDEF.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRDOC.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRHIER.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRRANK.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRREL.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRSAB.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRSAT.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRSMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/MRSTY.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/SRDEF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/SRSTR: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/SRSTRE1: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2021AB/META/SRSTRE2: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRCONSO.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRDEF.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRDOC.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRHIER.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRRANK.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRREL.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRSAB.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRSAT.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRSMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/MRSTY.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/SRDEF.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/SRSTR.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/SRSTRE1.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/SRSTRE2.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AA/META/semantic_groups.pipe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/UMLS/subset/2022AA/META/semantic_groups.pipe -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRCONSO.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRDEF.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRDOC.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRHIER.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRRANK.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRREL.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRSAB.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRSAT.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRSMAP.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/MRSTY.RRF: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/SRDEF.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/SRSTR.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/SRSTRE1.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/SRSTRE2.pipe: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /UMLS/subset/2022AB/META/semantic_groups.pipe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/UMLS/subset/2022AB/META/semantic_groups.pipe -------------------------------------------------------------------------------- /_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/_config.yml -------------------------------------------------------------------------------- /clinical_informatics_umls/__init__.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | -------------------------------------------------------------------------------- /clinical_informatics_umls/create_nodes_edges.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/create_nodes_edges.py -------------------------------------------------------------------------------- /clinical_informatics_umls/create_sqlite_db.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/create_sqlite_db.py -------------------------------------------------------------------------------- /clinical_informatics_umls/edges_part2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/edges_part2.py -------------------------------------------------------------------------------- /clinical_informatics_umls/neo2rdf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/neo2rdf.py -------------------------------------------------------------------------------- /clinical_informatics_umls/nodes_edges_part1.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/nodes_edges_part1.py -------------------------------------------------------------------------------- /clinical_informatics_umls/umls_downloader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/clinical_informatics_umls/umls_downloader.py -------------------------------------------------------------------------------- /conf/2021AA_subset_config.prop: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/conf/2021AA_subset_config.prop -------------------------------------------------------------------------------- /conf/2021AB_subset_config.prop: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/conf/2021AB_subset_config.prop -------------------------------------------------------------------------------- /conf/2022AB_config.prop: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/conf/2022AB_config.prop -------------------------------------------------------------------------------- /cypher_queries/part0.cypher: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/cypher_queries/part0.cypher -------------------------------------------------------------------------------- /cypher_queries/part1.cypher: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/cypher_queries/part1.cypher -------------------------------------------------------------------------------- /databases/mysql/mysql_indexes.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/databases/mysql/mysql_indexes.sql -------------------------------------------------------------------------------- /databases/mysql/mysql_tables.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/databases/mysql/mysql_tables.sql -------------------------------------------------------------------------------- /databases/postgres/psql_create_table.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/databases/postgres/psql_create_table.sql -------------------------------------------------------------------------------- /databases/postgres/psql_index_keys.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/databases/postgres/psql_index_keys.sql -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /grass/style.grass: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/grass/style.grass -------------------------------------------------------------------------------- /images/2022AB-full_directory.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/2022AB-full_directory.jpg -------------------------------------------------------------------------------- /images/MetamorphoSys_progress.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/MetamorphoSys_progress.png -------------------------------------------------------------------------------- /images/amino_acid_peptide_protein_to_root.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/amino_acid_peptide_protein_to_root.png -------------------------------------------------------------------------------- /images/call_db_schema_visualization.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/call_db_schema_visualization.png -------------------------------------------------------------------------------- /images/icd10cm_sameas_snomedctus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/icd10cm_sameas_snomedctus.png -------------------------------------------------------------------------------- /images/neo4j_graph_sample_transformed_to_rdf.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/neo4j_graph_sample_transformed_to_rdf.png -------------------------------------------------------------------------------- /images/schema.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/schema.png -------------------------------------------------------------------------------- /images/schema_dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/schema_dark.png -------------------------------------------------------------------------------- /images/semantic_network_olaparib.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/semantic_network_olaparib.png -------------------------------------------------------------------------------- /images/snomed_mapped_from_icd10cm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/snomed_mapped_from_icd10cm.png -------------------------------------------------------------------------------- /images/welcome_to_metamorphosys.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/images/welcome_to_metamorphosys.png -------------------------------------------------------------------------------- /notebooks/part0_indexing_constraints.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/notebooks/part0_indexing_constraints.ipynb -------------------------------------------------------------------------------- /notebooks/umls_graph_create.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/notebooks/umls_graph_create.ipynb -------------------------------------------------------------------------------- /output_data/neo2rdf.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/neo2rdf.ttl -------------------------------------------------------------------------------- /output_data/neo2rdf_test.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/neo2rdf_test.ttl -------------------------------------------------------------------------------- /output_data/neo4j_to_rdf_serialization.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/neo4j_to_rdf_serialization.ttl -------------------------------------------------------------------------------- /output_data/neo4j_to_turtle_serialization.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/neo4j_to_turtle_serialization.ttl -------------------------------------------------------------------------------- /output_data/sample_neo4j_to_rdf_serialization.rdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/sample_neo4j_to_rdf_serialization.rdf -------------------------------------------------------------------------------- /output_data/sample_neo4j_to_rdf_serialization.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/sample_neo4j_to_rdf_serialization.ttl -------------------------------------------------------------------------------- /output_data/testing.n3: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/testing.n3 -------------------------------------------------------------------------------- /output_data/testing.ttl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/testing.ttl -------------------------------------------------------------------------------- /output_data/v0_neo4j_umls_graph_mapped_to_rdf_sample.rdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/v0_neo4j_umls_graph_mapped_to_rdf_sample.rdf -------------------------------------------------------------------------------- /output_data/v0_neo4j_umls_graph_to_RDF_sample_triples.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/output_data/v0_neo4j_umls_graph_to_RDF_sample_triples.csv -------------------------------------------------------------------------------- /poetry.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/poetry.lock -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/pyproject.toml -------------------------------------------------------------------------------- /sqlite/create_sqlite_db.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/sqlite/create_sqlite_db.sh -------------------------------------------------------------------------------- /umls_user_guide/MetamorphoSys_101.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rcolinp/clinical_informatics_umls/HEAD/umls_user_guide/MetamorphoSys_101.md --------------------------------------------------------------------------------