├── .gitignore ├── .gitmodules ├── BUILD.sh ├── CMakeLists.txt ├── HISTORY.txt ├── LICENSE ├── MANIFEST.in ├── README.md ├── azure-pipelines.yml ├── azure-template-publish-job.yml ├── azure-template-tox-job.yml ├── docs-mkdocs ├── api_reference.md ├── api_reference │ ├── BinaryCifReader.md │ ├── BinaryCifWriter.md │ ├── CifFile.md │ ├── DataCategory.md │ ├── DataCategoryBase.md │ ├── DataCategoryFormatted.md │ ├── DataCategoryTyped.md │ ├── DictMethodRunner.md │ ├── DictionaryApi.md │ ├── DictionaryInclude.md │ ├── IoAdapterBase.md │ ├── IoAdapterCore.md │ ├── IoAdapterPy.md │ ├── Method.md │ ├── MethodUtils.md │ ├── PdbxContainers.md │ ├── PdbxExceptions.md │ ├── PdbxReader.md │ └── PdbxWriter.md ├── gen-api.py ├── index.md └── static │ ├── css │ └── mkdocstrings.css │ └── images │ ├── favicon-32x32.png │ ├── favicon.ico │ └── rcsb_logo.png ├── docs-sphinx └── Makefile ├── mkdocs.yml ├── mmcif ├── __init__.py ├── api │ ├── DataCategory.py │ ├── DataCategoryBase.py │ ├── DataCategoryFormatted.py │ ├── DataCategoryTyped.py │ ├── DictMethodRunner.py │ ├── DictionaryApi.py │ ├── DictionaryInclude.py │ ├── Method.py │ ├── MethodUtils.py │ ├── PdbxContainers.py │ └── __init__.py ├── core │ └── __init__.py ├── io │ ├── BinaryCifReader.py │ ├── BinaryCifWriter.py │ ├── BinaryCifWriter.py-save │ ├── BinaryCifWriter.py-working │ ├── BuildDictionaryExec.py │ ├── CifFile.py │ ├── IoAdapterBase.py │ ├── IoAdapterCore.py │ ├── IoAdapterPy.py │ ├── PdbxExceptions.py │ ├── PdbxReader.py │ ├── PdbxWriter.py │ └── __init__.py └── tests │ ├── BcifPrint.py │ ├── __init__.py │ ├── data │ ├── 1bna-errors.cif │ ├── 1bna.bcif.gz │ ├── 1bna.cif │ ├── 1ffk.cif │ ├── 1ffk.cif.gz │ ├── 1kip.cif │ ├── CCPN_H1GI.nef │ ├── PDBDEV_00000001_IHM.bcif.gz │ ├── PDBDEV_00000041.bcif │ ├── PDBDEV_00000041.bcif.gz │ ├── chemical_shifts_example.str │ ├── example-dependent-conditions.cif │ ├── example_sf.cif │ ├── extensions │ │ ├── embedded │ │ │ ├── e1.dic │ │ │ └── e2.dic │ │ ├── t1.dic │ │ └── t2.dic │ ├── mmcif_ddl-generator.dic │ ├── mmcif_ddl-master.dic │ ├── mmcif_ddl.dic │ ├── mmcif_ddl_generated.dic │ ├── mmcif_pdbx_v40.dic │ ├── mmcif_pdbx_v50.dic │ ├── mmcif_pdbx_v5_next.dic │ ├── mmcif_pdbx_v5_next_w_methods.dic │ ├── mmcif_pdbx_w_methods.dic │ ├── pdbx-dictionary-extensions-examples.dic │ ├── specialTestFile.cif │ ├── testFileWithStopTokens.cif │ ├── testSingleRow.cif │ ├── test_ext-generator.dic │ ├── unicode-char-ref-test.cif │ └── unicode-test.cif │ ├── test-output │ └── .keep │ ├── testBinaryCifReader.py │ ├── testBinaryCifWriter.py │ ├── testCifFileApi.py │ ├── testCifQuoting.py │ ├── testCifTab.py │ ├── testDataCategory.py │ ├── testDictionary2DDLm.py │ ├── testDictionaryApi.py │ ├── testDictionaryInclude.py │ ├── testDictionaryMarkdown.py │ ├── testDictionaryReadWrite.py │ ├── testGroupsDictiionaryApi.py │ ├── testIoAdapterCore.py │ ├── testIoAdapterPy.py │ ├── testMethodUtils.py │ ├── testPdbxContainers.py │ ├── testPdbxReadWrite.py │ ├── testPdbxReader.py │ ├── testPdbxWriter.py │ └── testStarReader.py ├── modules ├── cpp-core-mmciflib-wrapper-gen-binder │ ├── RUN_BINDER.sh │ ├── core_mmciflib_binder_Darwin.config │ ├── core_mmciflib_binder_Linux.config │ ├── current-pybind-include-list.h │ ├── exclude-include-pybind.list │ ├── include-binder │ │ ├── BlockIO.h │ │ ├── CifCorrector.h │ │ ├── CifDataInfo.h │ │ ├── CifDefs.h │ │ ├── CifExcept.h │ │ ├── CifFile.h │ │ ├── CifFileReadDef.h │ │ ├── CifFileUtil.h │ │ ├── CifParentChild.h │ │ ├── CifParserBase.h │ │ ├── CifParserInt.h │ │ ├── CifScannerBase.h │ │ ├── CifScannerInt.h │ │ ├── CifString.h │ │ ├── DICParserBase.h │ │ ├── DICParserInt.h │ │ ├── DICScannerBase.h │ │ ├── DICScannerInt.h │ │ ├── DataInfo.h │ │ ├── DicFile.h │ │ ├── DictDataInfo.h │ │ ├── DictObjCont.h │ │ ├── DictObjContInfo.h │ │ ├── DictObjFile.h │ │ ├── DictParentChild.h │ │ ├── Exceptions.h │ │ ├── GenCont.h │ │ ├── GenString.h │ │ ├── ISTable.h │ │ ├── ITTable.h │ │ ├── ParentChild.h │ │ ├── RcsbFile.h │ │ ├── RcsbPlatform.h │ │ ├── Serializer.h │ │ ├── TTable.h │ │ ├── TableError.h │ │ ├── TableFile.h │ │ ├── cclass.h │ │ ├── cname.h │ │ ├── debug.ih │ │ ├── engine.ih │ │ ├── main.ih │ │ ├── mapped_ptr_vector.C │ │ ├── mapped_ptr_vector.h │ │ ├── mapped_vector.C │ │ ├── mapped_vector.h │ │ ├── rcsb_math.h │ │ ├── rcsb_types.h │ │ ├── regcomp.ih │ │ ├── regerror.ih │ │ ├── regex.h │ │ ├── regex2.h │ │ └── utils.h │ ├── reformat-includes.py │ └── src-Darwin │ │ ├── CifFileReadDef.cpp │ │ ├── CifFileUtil.cpp │ │ ├── CifString.cpp │ │ ├── DataInfo.cpp │ │ ├── DicFile.cpp │ │ ├── GenCont.cpp │ │ ├── GenString.cpp │ │ ├── ISTable.cpp │ │ ├── ITTable.cpp │ │ ├── TableFile.cpp │ │ ├── mmciflib.cpp │ │ ├── mmciflib.modules │ │ ├── mmciflib.sources │ │ └── rcsb_types.cpp ├── cpp-core-mmciflib-wrapper-gen │ ├── Run.sh │ ├── mmciflib.cfg │ └── src │ │ ├── wrapCifDataInfo.cpp │ │ ├── wrapCifFile.cpp │ │ ├── wrapCifFileReadDef.cpp │ │ ├── wrapCifFileUtil.cpp │ │ ├── wrapDicFile.cpp │ │ ├── wrapDictDataInfo.cpp │ │ ├── wrapISTable.cpp │ │ ├── wrapTableFile.cpp │ │ ├── wrapmmciflib.cpp │ │ └── wraprcsb_types.cpp └── cpp-mmciflib-test │ ├── src │ ├── BigCifTest.C │ ├── CifDiff.C │ ├── CifInfo.C │ ├── CifReader.C │ ├── DataChecking.C │ ├── DictInfo.C │ ├── FOtest1.C │ ├── FOtest10.C │ ├── FOtest11.C │ ├── FOtest12.C │ ├── FOtest13.C │ ├── FOtest14.C │ ├── FOtest2.C │ ├── FOtest3.C │ ├── FOtest4.C │ ├── FOtest5.C │ ├── FOtest6.C │ ├── FOtest7.C │ ├── FOtest8.C │ ├── FOtest9.C │ ├── GroupTableTest2.C │ ├── SdbReader.C │ ├── checkdictionary.C │ └── selective-reading.C │ └── test │ ├── ADH041.cif │ ├── DBtest.sdb │ ├── Test1.cif │ ├── Test14.cif │ ├── Test2.cif │ ├── Test3.cif │ ├── bigcif.cif │ ├── bigcif1.cif │ ├── bigcif2.cif │ ├── bigcif3.cif │ ├── bigcif4.cif │ ├── bigcif5.cif │ ├── ddl-mm │ ├── dictionary.dic │ ├── infile01.db │ ├── infile02.db │ ├── local_ddl │ ├── local_dictionary │ ├── ndb_ddl │ ├── ndb_dictionary.dic │ ├── test.sh │ ├── view.cif │ ├── view1.cif │ 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