├── LICENSE ├── README.md ├── broccoli.py ├── example_dataset ├── Acaromyces_ingoldii__reduced.fasta ├── Amorphotheca_resinae__reduced.fasta ├── Bipolaris_maydis__reduced.fasta ├── Ceraceosorus_guamensis__reduced.fasta ├── Cryptococcus_neoformans__reduced.fasta └── Cyberlindnera_jadinii__reduced.fasta ├── images ├── logo_broccoli.png └── overview_broccoli.png ├── manual_Broccoli_v1.2.pdf └── scripts ├── __init__.py ├── broccoli_step1.py ├── broccoli_step2.py ├── broccoli_step3.py ├── broccoli_step4.py └── utils.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rderelle/Broccoli/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rderelle/Broccoli/HEAD/README.md -------------------------------------------------------------------------------- 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