├── .github └── workflows │ └── c-cpp.yml ├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── example ├── common_kmers.csv ├── host │ ├── GUT_GENOME012545.fna │ ├── GUT_GENOME018220.fna │ ├── GUT_GENOME233927.fna │ ├── GUT_GENOME255533.fna │ ├── NC_008527.fna │ ├── NC_009457.fna │ ├── NC_012892.fna │ ├── NC_017548.fna │ ├── NC_018592.fna │ └── NC_020238.fna ├── predictions.csv ├── virus │ ├── MGV-GENOME-0246745.fna │ ├── MGV-GENOME-0258256.fna │ ├── MGV-GENOME-0287285.fna │ ├── NC_005258.fna │ ├── NC_024123.fna │ ├── NC_024215.fna │ ├── NC_024330.fna │ ├── NC_024369.fna │ ├── NC_024375.fna │ └── NC_024379.fna └── virus_multifasta.fna ├── makefile ├── phist.py ├── phist_logo.png └── utils ├── input_file.cpp ├── input_file.h ├── kmer_helper.h ├── matcher.cpp ├── matcher.vcxproj ├── matcher.vcxproj.filters ├── matcher.vcxproj.user ├── phist.cpp ├── phist.sln ├── phist.vcxproj └── phist.vcxproj.filters /.github/workflows/c-cpp.yml: 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