├── LICENSE ├── README.md ├── deltasvm ├── Snakefile ├── config.json └── scripts │ ├── complment_seq.py │ ├── deltasvm.pl │ ├── pbs_test_single_curve.R │ ├── pbs_threshold_pbsnp.R │ └── unique_fasta.py └── pwm ├── compute-ic.py ├── pfm2pwm.py ├── score.py └── threshold.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/README.md -------------------------------------------------------------------------------- /deltasvm/Snakefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/Snakefile -------------------------------------------------------------------------------- /deltasvm/config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/config.json -------------------------------------------------------------------------------- /deltasvm/scripts/complment_seq.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/scripts/complment_seq.py -------------------------------------------------------------------------------- /deltasvm/scripts/deltasvm.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/scripts/deltasvm.pl -------------------------------------------------------------------------------- /deltasvm/scripts/pbs_test_single_curve.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/scripts/pbs_test_single_curve.R -------------------------------------------------------------------------------- /deltasvm/scripts/pbs_threshold_pbsnp.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/scripts/pbs_threshold_pbsnp.R -------------------------------------------------------------------------------- /deltasvm/scripts/unique_fasta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/deltasvm/scripts/unique_fasta.py -------------------------------------------------------------------------------- /pwm/compute-ic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/pwm/compute-ic.py -------------------------------------------------------------------------------- /pwm/pfm2pwm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/pwm/pfm2pwm.py -------------------------------------------------------------------------------- /pwm/score.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/pwm/score.py -------------------------------------------------------------------------------- /pwm/threshold.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ren-lab/snp-selex/HEAD/pwm/threshold.py --------------------------------------------------------------------------------