├── Data ├── genes_List.csv └── tcga_dictionary.tsv ├── GradCAM_FI ├── grad_cam.py ├── load_data.py └── model.py ├── LRP_SoftmaxGradient ├── LRP_example.ipynb ├── data │ └── images │ │ └── example.jpg └── utils │ ├── __pycache__ │ ├── helper.cpython-35.pyc │ └── visualizations.cpython-35.pyc │ ├── helper.py │ └── visualizations.py ├── Notebooks ├── GeneExpression_Classification_LSTM_CNN.ipynb ├── GeneExpression_Classification_SHAP_XBoost.ipynb ├── Sample Solution - Semantic Web Technologies Exercise.ipynb └── exerciseSheetMDS.ipynb ├── README.md └── images ├── common.png ├── fi.png ├── grid.png ├── shap.png ├── top_k.png └── wf.png /Data/genes_List.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Data/genes_List.csv -------------------------------------------------------------------------------- /Data/tcga_dictionary.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Data/tcga_dictionary.tsv -------------------------------------------------------------------------------- /GradCAM_FI/grad_cam.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/GradCAM_FI/grad_cam.py -------------------------------------------------------------------------------- /GradCAM_FI/load_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/GradCAM_FI/load_data.py -------------------------------------------------------------------------------- /GradCAM_FI/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/GradCAM_FI/model.py -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/LRP_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/LRP_example.ipynb -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/data/images/example.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/data/images/example.jpg -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/utils/__pycache__/helper.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/utils/__pycache__/helper.cpython-35.pyc -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/utils/__pycache__/visualizations.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/utils/__pycache__/visualizations.cpython-35.pyc -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/utils/helper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/utils/helper.py -------------------------------------------------------------------------------- /LRP_SoftmaxGradient/utils/visualizations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/LRP_SoftmaxGradient/utils/visualizations.py -------------------------------------------------------------------------------- /Notebooks/GeneExpression_Classification_LSTM_CNN.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Notebooks/GeneExpression_Classification_LSTM_CNN.ipynb -------------------------------------------------------------------------------- /Notebooks/GeneExpression_Classification_SHAP_XBoost.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Notebooks/GeneExpression_Classification_SHAP_XBoost.ipynb -------------------------------------------------------------------------------- /Notebooks/Sample Solution - Semantic Web Technologies Exercise.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Notebooks/Sample Solution - Semantic Web Technologies Exercise.ipynb -------------------------------------------------------------------------------- /Notebooks/exerciseSheetMDS.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/Notebooks/exerciseSheetMDS.ipynb -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/README.md -------------------------------------------------------------------------------- /images/common.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/common.png -------------------------------------------------------------------------------- /images/fi.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/fi.png -------------------------------------------------------------------------------- /images/grid.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/grid.png -------------------------------------------------------------------------------- /images/shap.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/shap.png -------------------------------------------------------------------------------- /images/top_k.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/top_k.png -------------------------------------------------------------------------------- /images/wf.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rezacsedu/OncoNetExplainer/HEAD/images/wf.png --------------------------------------------------------------------------------