├── .gitignore ├── LICENSE ├── README.md ├── data └── cytometry │ ├── dataset_1.csv │ ├── dataset_10.csv │ ├── dataset_2.csv │ ├── dataset_3.csv │ ├── dataset_4.csv │ ├── dataset_5.csv │ ├── dataset_6.csv │ ├── dataset_7.csv │ ├── dataset_8.csv │ ├── dataset_9.csv │ ├── sachs.RData │ └── sachs_details.csv ├── experiments ├── cytometry │ ├── analyze_pvalues.ipynb │ ├── analyze_pvalues.py │ ├── figures │ │ └── learned_dag.pdf │ ├── results_paper │ │ ├── cytometry_mch_kci_pvalues_env=1.npy │ │ ├── cytometry_mch_kci_pvalues_env=10.npy │ │ ├── cytometry_mch_kci_pvalues_env=2.npy │ │ ├── cytometry_mch_kci_pvalues_env=3.npy │ │ ├── cytometry_mch_kci_pvalues_env=4.npy │ │ ├── cytometry_mch_kci_pvalues_env=5.npy │ │ ├── cytometry_mch_kci_pvalues_env=6.npy │ │ ├── cytometry_mch_kci_pvalues_env=7.npy │ │ ├── cytometry_mch_kci_pvalues_env=8.npy │ │ └── cytometry_mch_kci_pvalues_env=9.npy │ └── run_cytometry_experiment.py ├── figures │ └── pairwise_oracle_pc_simulation.pdf ├── main_simulations │ ├── exp_quick_settings.py │ ├── exp_settings.py │ ├── figures │ │ ├── bivariate_multiplic_power_plots.pdf │ │ ├── bivariate_power_plots.pdf │ │ ├── empirical_select_rates_er_others.pdf │ │ ├── empirical_select_rates_er_ours.pdf │ │ ├── oracle_rate_relplot.pdf │ │ ├── oracle_select_rates_all_models.pdf │ │ ├── oracle_select_rates_ba.pdf │ │ └── oracle_select_rates_er.pdf │ ├── plot_bivariate_identifiability.ipynb │ ├── plot_bivariate_identifiability.py │ ├── plot_empirical_power.ipynb │ ├── plot_empirical_power.py │ ├── plot_oracle_rates.ipynb │ ├── plot_oracle_rates.py │ ├── results_paper │ │ ├── DEBUG_results.csv │ │ ├── bivariate_multiplic_power_results.csv │ │ ├── bivariate_power_results_paper.csv │ │ ├── old_results │ │ │ ├── environment_convergence_results.csv │ │ │ ├── environment_convergence_results_paper.csv │ │ │ ├── oracle_rates_results_power_paper.csv │ │ │ ├── oracle_select_rates_results_old.csv │ │ │ ├── pairwise_power_results_100_samples.csv │ │ │ ├── pairwise_power_results_50_reps.csv │ │ │ ├── pairwise_power_results_envs.csv │ │ │ ├── pairwise_power_results_envs_supp.csv │ │ │ ├── pairwise_power_results_first_half.csv │ │ │ ├── pairwise_power_results_n_vars.csv │ │ │ ├── pairwise_power_results_n_vars_v2.csv │ │ │ ├── pairwise_power_results_paper_05_08.csv │ │ │ ├── pairwise_power_results_paper_subset.csv │ │ │ ├── pairwise_power_results_paper_subset_v2.csv │ │ │ ├── pairwise_power_results_samples.csv │ │ │ ├── pairwise_power_results_second_half.csv │ │ │ ├── pairwise_power_results_small.csv │ │ │ ├── pairwise_power_results_sparsity.csv │ │ │ └── soft_samples_results_paper.csv │ │ ├── oracle_rates_results_paper.csv │ │ ├── oracle_select_rates_results_paper.csv │ │ └── pairwise_power_results_paper.csv │ └── run_experiment.py ├── requirements.txt ├── teaser_sparse_oracle_pc.ipynb └── teaser_sparse_oracle_pc.py ├── requirements.txt ├── setup.py └── sparse_shift ├── __init__.py ├── causal_learn ├── GraphClass.py ├── PC.py ├── 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