├── .Rbuildignore ├── .editorconfig ├── .github ├── .gitignore └── workflows │ └── check-bioc.yml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── AllClassUnions.R ├── AllGenerics.R ├── CompAnnotationSource.R ├── CompDbSource.R ├── Matched.R ├── MatchedSpectra.R ├── group_standards.R ├── hidden-aliases.R ├── matchFormula.R ├── matchSpectra.R ├── matchValues.R └── validateMatchedSpectra.R ├── README.md ├── _pkgdown.yml ├── inst ├── CITATION ├── cfg │ └── wm.cfg └── extdata │ ├── LipidMaps_CompDB.txt │ ├── MS1_example.txt │ ├── Standard_list_example.txt │ └── minimb.RData ├── man ├── CompAnnotationSource.Rd ├── CompDbSource.Rd ├── CompareSpectraParam.Rd ├── Matched.Rd ├── MatchedSpectra.Rd ├── createStandardMixes.Rd ├── figures │ └── logo.png ├── hidden_aliases.Rd ├── matchFormula.Rd ├── matchSpectra.Rd ├── matchValues.Rd └── validateMatchedSpectra.Rd ├── tests ├── testthat.R └── testthat │ ├── test_CompAnnotationSource.R │ ├── test_CompDbSource.R │ ├── test_Matched.R │ ├── test_MatchedSpectra.R │ ├── test_group_standards.R │ ├── test_matchFormula.R │ ├── test_matchSpectra.R │ ├── test_matchValues.R │ └── test_validateMatchedSpectra.R └── vignettes ├── .gitignore ├── MetaboAnnotation.Rmd └── references.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rformassspectrometry/MetaboAnnotation/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rformassspectrometry/MetaboAnnotation/HEAD/.editorconfig -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- 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