├── .Rhistory ├── .gitignore ├── LICENSE ├── README.md ├── docs ├── IllustrativeGraph-1.png ├── equations_for_readme.lyx ├── equations_for_readme.lyx~ ├── expectation_def.png ├── negative_binomial_example_output.png ├── posterior_def.png ├── robustness_and_sensitivity.png ├── sensitivity_def.png └── variable_def.png ├── examples ├── .Rhistory ├── .gitignore ├── earnings_vary_si │ ├── Analysis_earnings_vary_si.ipynb │ ├── README.md │ ├── Sampling_earnings_vary_si.ipynb │ ├── earnings_vary_si.data.R │ └── models │ │ ├── earnings_vary_si.stan │ │ ├── earnings_vary_si_corrected.stan │ │ ├── earnings_vary_si_corrected_generated.stan │ │ ├── earnings_vary_si_corrected_sensitivity.stan │ │ ├── earnings_vary_si_corrected_sensitivity_parameters.stan │ │ ├── earnings_vary_si_generated.stan │ │ ├── earnings_vary_si_sensitivity.stan │ │ └── earnings_vary_si_sensitivity_parameters.stan ├── negative_binomial │ ├── .gitignore │ ├── models │ │ ├── .gitignore │ │ ├── negative_binomial.stan │ │ └── negative_binomial_original.stan │ ├── negative_binomial.data.R │ ├── negative_binomial2.data.R │ └── negative_binomial_sensitivity.R ├── normal_censored │ ├── models │ │ ├── .gitignore │ │ └── normal_censored.stan │ ├── normal_censored.data.R │ └── normal_censored_sensitivity.R └── schools │ ├── SchoolSampling.ipynb │ ├── fit.R │ ├── makefile │ ├── models │ ├── .gitignore │ ├── schools-1.stan │ ├── schools-1_original.stan │ └── schools.stan │ ├── school_examples.R │ ├── schools-1.data.R │ └── schools-1.init.R ├── rstansensitivity ├── ..Rcheck │ └── 00install.out ├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R │ ├── bayesij_lib.R │ ├── covariance_standard_errors_lib.R │ ├── result_processing_lib.R │ ├── stan_sensitivity_lib.R │ └── stan_utils_lib.R ├── docs │ ├── authors.html │ ├── docsearch.css │ ├── docsearch.js │ ├── index.html │ ├── link.svg │ ├── pkgdown.css │ ├── pkgdown.js │ ├── pkgdown.yml │ └── reference │ │ ├── CheckModelEquivalence.html │ │ ├── EvaluateModelAtDraws.html │ │ ├── GenerateSensitivityFromModel.html │ │ ├── GetHyperparameterDataFrame.html │ │ ├── GetImportanceSamplingFromModelFit.html │ │ ├── GetMCMCDataFrame.html │ │ ├── GetSamplingModelFilename.html │ │ ├── GetSensitivityStandardErrors.html │ │ ├── GetStanSensitivityFromModelFit.html │ │ ├── GetStanSensitivityModel.html │ │ ├── GetTidyResult.html │ │ ├── PlotSensitivities.html │ │ ├── PredictSensitivityFromStanData.html │ │ ├── SetSensitivityParameterList.html │ │ ├── SummarizeSensitivityMatrices.html │ │ ├── TransformSensitivityResult.html │ │ └── index.html ├── inst │ ├── generate_models.py │ └── generate_models_unittest.py ├── man │ ├── CheckModelEquivalence.Rd │ ├── ComputeIJCovariance.Rd │ ├── CovarianceMatrixToDataframe.Rd │ ├── EvaluateModelAtDraws.Rd │ ├── GenerateSensitivityFromModel.Rd │ ├── GetBlockBootstrapStandardErrors.Rd │ ├── GetHyperparameterDataFrame.Rd │ ├── GetImportanceSamplingFromModelFit.Rd │ ├── GetMCMCDataFrame.Rd │ ├── GetSamplingModelFilename.Rd │ ├── GetSensitivityStandardErrors.Rd │ ├── GetStanSensitivityFromModelFit.Rd │ ├── GetStanSensitivityModel.Rd │ ├── GetTidyResult.Rd │ ├── GroupLogLikelihoodDraws.Rd │ ├── PlotSensitivities.Rd │ ├── PredictSensitivityFromStanData.Rd │ ├── SetSensitivityParameterList.Rd │ ├── SummarizeSensitivityMatrices.Rd │ └── TransformSensitivityResult.Rd └── tests │ ├── run_tests.R │ ├── testthat.R │ └── testthat │ ├── Rplots.pdf │ ├── test_conjugate_model.R │ ├── test_core_functions.R │ ├── test_ij.R │ ├── test_models │ ├── rstansensitivity_test.data.R │ ├── rstansensitivity_test.stan │ ├── rstansensitivity_test_generated.stan │ ├── rstansensitivity_test_sensitivity.stan │ └── rstansensitivity_test_sensitivity_parameters.stan │ ├── test_post_processing.R │ └── test_reusing_model.R └── rstansensitivity_0.0.0.9000.tar.gz /.Rhistory: -------------------------------------------------------------------------------- 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