├── .DS_Store ├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check-inla-stable.yaml │ ├── R-CMD-check-inla-testing.yaml │ └── pkgdown.yaml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── .DS_Store ├── BRFSS.R ├── ChangeRegion.R ├── DemoData.R ├── DemoData2.R ├── DemoMap.R ├── DemoMap2.R ├── INLA-internal-pc.R ├── INLA-internals.R ├── Kendata.R ├── KingCounty.R ├── MalawiData.R ├── MalawiMap.R ├── SUMMER-package.R ├── SUMMER.R ├── aggregateSurvey.R ├── benchmark.R ├── check_global.R ├── compareEstimates.R ├── expit.R ├── getAdjusted.R ├── getAmat.R ├── getAreaName.R ├── getBirths.R ├── getCounts.R ├── getDiag.R ├── getDirect.R ├── getDirectList.R ├── getSmoothed.R ├── hatchPlot.R ├── kenyaPopulationData.R ├── logitNormMean.R ├── mapEstimates.R ├── mapPlot.R ├── mapPoints.R ├── plot_projINLA.R ├── popGrid.R ├── projKenya.R ├── ridgePlot.R ├── rst.R ├── simPop.R ├── simSPDE.R ├── simhyper.R ├── smoothArea.R ├── smoothCluster.R ├── smoothDirect.R ├── smoothSurvey.R ├── smoothUnit.R ├── summary.R ├── tcpPlot.R └── zzz.R ├── README.md ├── SUMMER.Rproj ├── _pkgdown.yml ├── cran-comments.md ├── data ├── BRFSS.rda ├── DemoData.rda ├── DemoData2.rda ├── DemoMap.rda ├── DemoMap2.rda ├── KenData.rda ├── KingCounty.rda ├── MalawiData.rda ├── MalawiMap.rda └── kenyaPopulationData.rda ├── inst ├── .DS_Store └── doc │ ├── cluster-model-vignette.html │ ├── cluster-model-vignette.html.asis │ ├── small-area-estimation.html │ ├── small-area-estimation.html.asis │ ├── u5mr-dhs-vignette.html │ ├── u5mr-dhs-vignette.html.asis │ ├── u5mr-vignette.html │ └── u5mr-vignette.html.asis ├── man ├── BRFSS.Rd ├── Benchmark.Rd ├── ChangeRegion.Rd ├── DemoData.Rd ├── DemoData2.Rd ├── DemoMap.Rd ├── DemoMap2.Rd ├── KenData.Rd ├── KingCounty.Rd ├── MalawiData.Rd ├── MalawiMap.Rd ├── SUMMER-package.Rd ├── aggPixelPreds.Rd ├── aggPop.Rd ├── aggregateSurvey.Rd ├── calibrateByRegion.Rd ├── compareEstimates.Rd ├── expit.Rd ├── figures │ ├── SUMMER.png │ ├── Workflow.png │ ├── lifecycle-deprecated.svg │ ├── lifecycle-experimental.svg │ ├── lifecycle-stable.svg │ └── lifecycle-superseded.svg ├── fitGeneric.Rd ├── fitINLA.Rd ├── fitINLA2.Rd ├── getAdjusted.Rd ├── getAmat.Rd ├── getAreaName.Rd ├── getBirths.Rd ├── getCounts.Rd ├── getDiag.Rd ├── getDirect.Rd ├── getDirectList.Rd ├── getSmoothed.Rd ├── hatchPlot.Rd ├── iid.new.Rd ├── iid.new.pc.Rd ├── kenyaPopulationData.Rd ├── logit.Rd ├── logitNormMean.Rd ├── makePopIntegrationTab.Rd ├── mapEstimates.Rd ├── mapPlot.Rd ├── mapPoints.Rd ├── plot.SUMMERproj.Rd ├── poppRegionFromPopMat.Rd ├── print.SUMMERmodel.Rd ├── print.SUMMERmodel.svy.Rd ├── print.SUMMERprojlist.Rd ├── projKenya.Rd ├── ridgePlot.Rd ├── rst.Rd ├── rw.new.Rd ├── rw.new.pc.Rd ├── setThresholdsByRegion.Rd ├── simPop.Rd ├── simPopInternal.Rd ├── simSPDE.Rd ├── simhyper.Rd ├── smoothArea.Rd ├── smoothCluster.Rd ├── smoothDirect.Rd ├── smoothSurvey.Rd ├── smoothUnit.Rd ├── st.new.Rd ├── st.new.pc.Rd ├── summary.SUMMERmodel.Rd ├── summary.SUMMERmodel.svy.Rd ├── summary.SUMMERprojlist.Rd └── tcpPlot.Rd ├── tests ├── testthat.R └── testthat │ ├── test-diag.R │ ├── test-getDirect.R │ ├── test-smoothCluster.R │ ├── test-smoothDirect.R │ └── test-smoothSurvey.R └── vignettes ├── articles └── web_only │ ├── cluster-model-vignette.Rmd │ ├── figure │ ├── bhf.unit.comp-1.png │ ├── brfss.comp-1.png │ ├── brfss.comp-2.png │ ├── brfss.comp.2-1.png │ ├── grape.comp-1.png │ ├── map.small.areas-1.png │ ├── map.small.areas-2.png │ ├── rank.small.areas-1.png │ ├── unnamed-chunk-1-1.png │ ├── unnamed-chunk-12-1.png │ ├── unnamed-chunk-15-1.png │ ├── unnamed-chunk-16-1.png │ ├── unnamed-chunk-17-1.png │ ├── unnamed-chunk-18-1.png │ ├── unnamed-chunk-2-1.png │ ├── unnamed-chunk-20-1.png │ ├── unnamed-chunk-21-1.png │ ├── unnamed-chunk-22-1.png │ ├── unnamed-chunk-23-1.png │ ├── unnamed-chunk-24-1.png │ ├── unnamed-chunk-26-1.png │ ├── unnamed-chunk-27-1.png │ ├── unnamed-chunk-28-1.png │ ├── unnamed-chunk-29-1.png │ ├── 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