├── .Rbuildignore ├── .github └── workflows │ └── check-standard.yml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── UKWGS84mask.R ├── assessBias1D.R ├── assessEnvBias.R ├── assessRarityBias.R ├── assessRecordNumber.R ├── assessRepeatVisits.R ├── assessSpatialBias.R ├── assessSpatialCov.R ├── assessSpatialUncertainty.R ├── assessSpeciesID.R ├── assessSpeciesNumber.R ├── backgroundEnvDat.R ├── callunaData.R ├── createData.R ├── random40Species.R ├── random40SpeciesEnvDat.R ├── simDat.R └── simEnvDat.R ├── README.md ├── data ├── UKWGS84mask.rdata ├── backgroundEnvDat.rdata ├── callunaData.rdata ├── random40Species.rdata ├── random40SpeciesEnvDat.rdata ├── simDat.rdata └── simEnvDat.rdata ├── man ├── UKWGS84mask.Rd ├── assessBias1D.Rd ├── assessEnvBias.Rd ├── assessRarityBias.Rd ├── assessRecordNumber.Rd ├── assessRepeatVisits.Rd ├── assessSpatialBias.Rd ├── assessSpatialCov.Rd ├── assessSpatialUncertainty.Rd ├── assessSpeciesID.Rd ├── assessSpeciesNumber.Rd ├── backgroundEnvDat.Rd ├── callunaData.Rd ├── random40Species.Rd ├── random40SpeciesEnvDat.Rd ├── simDat.Rd └── simEnvDat.Rd ├── occAssess.Rproj ├── tests ├── testthat.R └── testthat │ ├── test-errors.R │ └── test-outputs.R └── vignettes ├── .gitignore ├── figure ├── out10-1.png ├── out3-1.png ├── out4-1.png ├── out5-1.png ├── out6-1.png ├── out7-1.png ├── out7-2.png ├── unnamed-chunk-10-1.png ├── unnamed-chunk-12-1.png ├── unnamed-chunk-2-1.png ├── unnamed-chunk-4-1.pdf ├── unnamed-chunk-4-1.png ├── unnamed-chunk-5-1.pdf ├── unnamed-chunk-5-1.png ├── unnamed-chunk-6-1.pdf ├── unnamed-chunk-6-1.png ├── unnamed-chunk-7-1.png ├── unnamed-chunk-8-1.pdf ├── unnamed-chunk-8-1.png ├── unnamed-chunk-8-2.pdf └── unnamed-chunk-8-2.png ├── occAssess.Rmd ├── occAssess.Rmd.orig ├── occAssessReproducible.Rmd ├── occAssessUKRandom40SpeciesVaryingRecNumbers.Rmd └── occAssessUKRandom40SpeciesVaryingRecNumbers.Rmd.orig /.Rbuildignore: 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