├── Makefile ├── Readme.md ├── braindecode ├── Makefile ├── __init__.py ├── adversarial │ ├── __init__.py │ ├── layers.py │ └── theano_funcs.py ├── analysis │ ├── __init__.py │ ├── check_shallow_env_corrs.py │ ├── cluster.py │ ├── combine_weights.py │ ├── create_amplitude_perturbation_corrs.py │ ├── create_env_class_corrs.py │ ├── create_env_corrs.py │ ├── create_unit_output_class_corrs.py │ ├── data_generation.py │ ├── envelopes.py │ ├── heatmap.py │ ├── input_gradient.py │ ├── kaggle.py │ ├── metrics.py │ ├── mixture.py │ ├── movie_util.py │ ├── pandas_util.py │ ├── patterns.py │ ├── plot_util.py │ ├── spotlight.py │ ├── stats.py │ └── util.py ├── configs │ ├── __init__.py │ ├── csp_template.yaml │ ├── eegnet_template.yaml │ ├── experiments │ │ ├── 0_2_4_hz_highpass.yaml │ │ ├── 150_fs.yaml │ │ ├── 250_fs.yaml │ │ ├── 300_fs.yaml │ │ ├── 4sec_movements │ │ │ ├── C_sensors.yaml │ │ │ ├── cnt │ │ │ │ ├── cnt_4_layers.yaml │ │ │ │ ├── cnt_4_layers_car.yaml │ │ │ │ ├── cnt_4_layers_simple.yaml │ │ │ │ ├── cnt_4_layers_simple_car.yaml │ │ │ │ ├── cnt_4_layers_super_simple.yaml │ │ │ │ └── defaults.yaml │ │ │ ├── deeper │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ └── raw_net_300_fs.yaml │ │ │ ├── dry_32_sensors │ │ │ │ ├── filenames.yaml │ │ │ │ ├── raw_net_no_resample.yaml │ │ │ │ ├── raw_net_train_test_online.yaml │ │ │ │ └── raw_net_train_test_set.yaml │ │ │ ├── dry_electrodes │ │ │ │ ├── fb_net_150_fs.yaml │ │ │ │ ├── filenames.yaml │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ └── raw_net_300_fs.yaml │ │ │ ├── filenames.yaml │ │ │ ├── full_filenames.yaml │ │ │ ├── no_drop_time │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ └── raw_net_300_fs.yaml │ │ │ ├── raw_net_150_fs.yaml │ │ │ ├── raw_net_300_fs.yaml │ │ │ ├── train_test_filenames.yaml │ │ │ └── windows │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_300_fs.yaml │ │ │ │ ├── raw_net_500_fs_dry_only.yaml │ │ │ │ └── windows.yaml │ │ ├── bci_competition │ │ │ ├── cnt │ │ │ │ ├── all_subjects │ │ │ │ │ ├── all_subject_set.yaml │ │ │ │ │ └── cnt_4_layers.yaml │ │ │ │ ├── cnt_4_layer_net_in_net.yaml │ │ │ │ ├── cnt_4_layers.yaml │ │ │ │ ├── defaults.yaml │ │ │ │ └── filenames.yaml │ │ │ ├── fb_net_150_fs.yaml │ │ │ ├── fb_net_250_fs.yaml │ │ │ ├── fb_net_debug.yaml │ │ │ ├── filenames.yaml │ │ │ ├── raw_net_150_fs.yaml │ │ │ ├── raw_net_250_fs.yaml │ │ │ └── train_test │ │ │ │ ├── avg_raw │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_250_fs.yaml │ │ │ │ └── raw_net_debug.yaml │ │ │ │ ├── defaults.yaml │ │ │ │ ├── fb_net_150_fs.yaml │ │ │ │ ├── fb_net_250_fs.yaml │ │ │ │ ├── merged_first_layers │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_250_fs.yaml │ │ │ │ └── raw_net_merged_first_layers.yaml │ │ │ │ ├── no_dropout_time │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_150_repl_old.yaml │ │ │ │ ├── raw_net_250_fs.yaml │ │ │ │ └── raw_net_no_drop_time.yaml │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_250_fs.yaml │ │ │ │ └── samplewise │ │ │ │ ├── defaults.yaml │ │ │ │ ├── fb_net_150_fs.yaml │ │ │ │ ├── fb_net_250_fs.yaml │ │ │ │ ├── raw_net_150_fs.yaml │ │ │ │ ├── raw_net_250_fs.yaml │ │ │ │ └── raw_net_debug.yaml │ │ ├── cnt_4_layer_net_in_net.yaml │ │ ├── cnt_4_layer_simple.yaml │ │ ├── cnt_4_layer_super_simple.yaml │ │ ├── cnt_iterator_monitor.yaml │ │ ├── crash │ │ │ ├── deep_5_exp.yaml │ │ │ └── shallow_cnt_paper_nonlin.yaml │ │ ├── csp │ │ │ ├── bci_competition │ │ │ │ ├── defaults.yaml │ │ │ │ ├── our_variant.yaml │ │ │ │ ├── their_variant.yaml │ │ │ │ ├── their_variant_good_ival.yaml │ │ │ │ └── train_test │ │ │ │ │ ├── feature_select_their_ival.yaml │ │ │ │ │ ├── their_variant.yaml │ │ │ │ │ ├── their_variant_feature_select.yaml │ │ │ │ │ └── their_variant_their_ival.yaml │ │ │ └── defaults.yaml │ │ ├── debug │ │ │ ├── artificial_data.yaml │ │ │ ├── artificial_debug.yaml │ │ │ ├── different_folders.yaml │ │ │ ├── four_sec_torque_test.yaml │ │ │ ├── locking_debug.yaml │ │ │ ├── printing_error.yaml │ │ │ ├── single_filter_net.yaml │ │ │ ├── single_filter_net_with_default.yaml │ │ │ ├── softmax_net.yaml │ │ │ ├── training_instability_four_sec.yaml │ │ │ └── weight_decay.yaml │ │ ├── defaults.yaml │ │ ├── fb_net_base.yaml │ │ ├── fb_set.yaml │ │ ├── fixed_trial_split.yaml │ │ ├── grasp_lift │ │ │ ├── all_sub_grasp_lift_set.yaml │ │ │ ├── all_subjects │ │ │ │ ├── deeper.yaml │ │ │ │ ├── deeper_batch_norm.yaml │ │ │ │ ├── deeper_more_time.yaml │ │ │ │ ├── first_normal_then_nin.yaml │ │ │ │ ├── five_layer_net_in_net.yaml │ │ │ │ ├── four_layer_net_in_net.yaml │ │ │ │ ├── four_sec.yaml │ │ │ │ ├── seven_layer.yaml │ │ │ │ ├── six_layer.yaml │ │ │ │ ├── standard_cnn.yaml │ │ │ │ ├── three_layer_net_in_net.yaml │ │ │ │ └── two_subnets.yaml │ │ │ ├── as_tutorial.yaml │ │ │ ├── cnt_3_layer_net_in_net.yaml │ │ │ ├── cnt_4_layer_net_in_net.yaml │ │ │ ├── cnt_first_normal_then_net_in_net.yaml │ │ │ ├── cnt_monitor_iterator.yaml │ │ │ ├── cnt_raw_net_6_layer.yaml │ │ │ ├── cnt_raw_net_7_layer.yaml │ │ │ ├── cnt_raw_net_deeper.yaml │ │ │ ├── cnt_raw_net_deeper_batch_norm.yaml │ │ │ ├── cnt_raw_net_network_in_network.yaml │ │ │ ├── cnt_raw_net_no_drop_time.yaml │ │ │ ├── cnt_recurrent_net.yaml │ │ │ ├── cnt_standard_cnn_net.yaml │ │ │ ├── cnt_two_subnets.yaml │ │ │ ├── deeper.yaml │ │ │ ├── defaults.yaml │ │ │ ├── four_sec.yaml │ │ │ ├── four_sec_debug.yaml │ │ │ ├── grasp_lift_set.yaml │ │ │ ├── more_time │ │ │ │ ├── deeper.yaml │ │ │ │ ├── deeper_shorter.yaml │ │ │ │ └── two_subnets.yaml │ │ │ ├── no_resample │ │ │ │ └── deeper.yaml │ │ │ └── two_subnets.yaml │ │ ├── models │ │ │ ├── deep5.yaml │ │ │ ├── merged.yaml │ │ │ └── shallow.yaml │ │ ├── online │ │ │ ├── anla.yaml │ │ │ ├── anla_3class.yaml │ │ │ ├── cnt_combined_all.yaml │ │ │ ├── cnt_in_cabin.yaml │ │ │ ├── cnt_with_breaks.yaml │ │ │ ├── cnt_with_merged_net.yaml │ │ │ ├── csp.yaml │ │ │ ├── elkh.yaml │ │ │ ├── hawe.yaml │ │ │ ├── lufi.yaml │ │ │ ├── lufi_chinese_demo.yaml │ │ │ ├── sama.yaml │ │ │ ├── sensors_64.yaml │ │ │ └── start_end_mrk.yaml │ │ ├── paper │ │ │ ├── 4_layer_no_nin.yaml │ │ │ ├── bci_competition │ │ │ │ ├── bcic_data.yaml │ │ │ │ ├── cnt │ │ │ │ │ ├── deep_4_cnt.yaml │ │ │ │ │ ├── deep_4_cnt_net_car.yaml │ │ │ │ │ ├── merged_cnt.yaml │ │ │ │ │ ├── resnet_cnt.yaml │ │ │ │ │ ├── shallow_cnt.yaml │ │ │ │ │ └── shallow_cnt_car.yaml │ │ │ │ ├── csp.yaml │ │ │ │ ├── csp_like_ours.yaml │ │ │ │ ├── epo │ │ │ │ │ ├── deep_4_epo.yaml │ │ │ │ │ ├── deep_fft_epo.yaml │ │ │ │ │ ├── merged_epo.yaml │ │ │ │ │ └── shallow_epo.yaml │ │ │ │ └── filenames.yaml │ │ │ ├── cnt.yaml │ │ │ ├── cnt_preprocessors.yaml │ │ │ ├── csp.yaml │ │ │ ├── deep_4.yaml │ │ │ ├── deep_4_cnt.yaml │ │ │ ├── deep_4_epo.yaml │ │ │ ├── defaults.yaml │ │ │ ├── epo.yaml │ │ │ ├── fft_epo.yaml │ │ │ ├── fft_epo_combined.yaml │ │ │ ├── fft_epo_freq_spat_time.yaml │ │ │ ├── fft_epo_freq_time_spat.yaml │ │ │ ├── fft_epo_spat_freq_time.yaml │ │ │ ├── grasp_lift │ │ │ │ ├── 5_layer_no_nin.yaml │ │ │ │ ├── all_sub_grasp_lift_set.yaml │ │ │ │ ├── cnt_monitor_iterator.yaml │ │ │ │ ├── deep_4_exp.yaml │ │ │ │ ├── deep_5_exp.yaml │ │ │ │ ├── defaults.yaml │ │ │ │ └── shallow_exp.yaml │ │ │ ├── merged.yaml │ │ │ ├── merged_cnt.yaml │ │ │ ├── merged_epo.yaml │ │ │ ├── ours │ │ │ │ ├── cnt │ │ │ │ │ ├── deep_4_cnt.yaml │ │ │ │ │ ├── deep_4_cnt_net_car.yaml │ │ │ │ │ ├── merged_cnt.yaml │ │ │ │ │ ├── resnet_cnt.yaml │ │ │ │ │ ├── shallow_cnt.yaml │ │ │ │ │ └── shallow_cnt_car.yaml │ │ │ │ ├── csp.yaml │ │ │ │ ├── csp_car.yaml │ │ │ │ ├── epo │ │ │ │ │ ├── deep_4_epo.yaml │ │ │ │ │ ├── deep_fft_epo.yaml │ │ │ │ │ ├── merged_epo.yaml │ │ │ │ │ └── shallow_epo.yaml │ │ │ │ ├── our_data.yaml │ │ │ │ └── shallow.yaml │ │ │ ├── res_net.yaml │ │ │ ├── resnet_cnt.yaml │ │ │ ├── shallow.yaml │ │ │ ├── shallow_cnt.yaml │ │ │ └── shallow_epo.yaml │ │ ├── raw_net_base.yaml │ │ ├── raw_net_deeper.yaml │ │ ├── raw_net_deeper_batch_norm.yaml │ │ ├── raw_net_no_drop_time.yaml │ │ ├── raw_set.yaml │ │ ├── samplewise.yaml │ │ ├── semantic_classes │ │ │ ├── cnt.yaml │ │ │ ├── deep_5_cnt.yaml │ │ │ ├── fb_net_150_fs.yaml │ │ │ ├── filenames.yaml │ │ │ ├── raw_net_150_fs.yaml │ │ │ ├── raw_net_150_fs_best.yaml │ │ │ ├── raw_net_300_fs.yaml │ │ │ ├── raw_net_deeper.yaml │ │ │ ├── raw_net_deeper_batch_norm.yaml │ │ │ ├── raw_net_exponential_standardize.yaml │ │ │ └── shallow_cnt.yaml │ │ ├── tutorial │ │ │ └── shallow_net_online.yaml │ │ ├── two_file_cnt_set.yaml │ │ ├── two_file_epo_set.yaml │ │ └── ultrasound │ │ │ ├── auto_up.yaml │ │ │ ├── classifier.yaml │ │ │ ├── defaults.yaml │ │ │ ├── dilated.yaml │ │ │ ├── dilated_old.yaml │ │ │ ├── simple_resnet.yaml │ │ │ ├── u_net.yaml │ │ │ └── u_net_old.yaml │ ├── python │ │ ├── csp_dry_ilmenau.py │ │ └── csp_dry_sahara.py │ └── sacred │ │ ├── __init__.py │ │ ├── bcic_iv_2a.py │ │ ├── bcic_iv_2a_cross_subject.py │ │ ├── bcic_iv_2a_kappa.py │ │ ├── bcic_iv_2b.py │ │ ├── bcic_iv_2b_cv.py │ │ ├── csp │ │ ├── __init__.py │ │ └── online.py │ │ ├── deep_shallow_hybrid.py │ │ ├── online.py │ │ └── online_nets.py ├── csp │ ├── __init__.py │ ├── autolearn.py │ ├── experiment.py │ ├── feature_selection.py │ ├── ival_optimizers.py │ ├── pipeline.py │ ├── print_results.py │ ├── results.py │ ├── train_experiments.py │ ├── train_multiple_jobs.py │ └── train_on_cluster.py ├── datahandling │ ├── __init__.py │ ├── batch_iteration.py │ ├── batch_modifier.py │ ├── preprocessing.py │ ├── preprocessing_funcs.py │ ├── splitters.py │ └── util.py ├── datasets │ ├── __init__.py │ ├── class_10.py │ ├── cnt_signal_matrix.py │ ├── combined.py │ ├── convert_bcic_iv_2b.m │ ├── fft.py │ ├── filterbank.py │ ├── generate_filterbank.py │ ├── grasp_lift.py │ ├── loaders.py │ ├── pylearn.py │ ├── random.py │ ├── raw.py │ ├── sensor_positions.py │ ├── sensor_positions_for_plot │ │ ├── Robi_Rob.m │ │ ├── Waveguard2Dpos._lukas_mail.csv │ │ ├── mntutil_posWaveguard128_me.m │ │ ├── mntutil_posWaveguard128_old.m │ │ └── sensor-pos-laura.txt │ ├── signal_processor.py │ ├── simulated.py │ └── trial_segmenter.py ├── experiments │ ├── __init__.py │ ├── experiment.py │ ├── experiment_runner.py │ ├── load.py │ └── parse.py ├── hyperopt │ ├── HPOlib.cmd │ ├── __init__.py │ ├── config.cfg │ ├── hyperopt.py │ ├── readme.txt │ ├── robin_rawnet │ │ ├── config.cfg │ │ ├── smac_2_08_00-master │ │ │ └── raw_net_params.pcs │ │ └── templates.yaml │ ├── runRobin.py │ ├── smac_2_08_00-master │ │ └── bandpower_params.pcs │ └── startup.cmd ├── models │ ├── __init__.py │ ├── deep5.py │ ├── merged_net.py │ ├── resnet.py │ └── shallow_fbcsp.py ├── mywyrm │ ├── __init__.py │ ├── clean.py │ ├── plot.py │ └── processing.py ├── notebooks │ ├── explanations │ │ ├── Grasp_Lift_Model_Development.ipynb │ │ ├── Multiple_Prediction_Same_Convolutions.ipynb │ │ └── Pattern_Visualization.ipynb │ ├── online │ │ └── Supervised_Online_Training_With_Small_Breaks.ipynb │ ├── paper │ │ └── Paper_Outline.ipynb │ ├── results │ │ ├── BCI_Competition_4_Set_2a.ipynb │ │ ├── Deep_Improvement.ipynb │ │ ├── Final_Comparison.ipynb │ │ ├── Residual_Net.ipynb │ │ ├── Result_Paper.ipynb │ │ ├── Results_Kaggle_Grasp_Lift.ipynb │ │ ├── Square_vs_Elu_Mean_vs_Max.ipynb │ │ └── modifications │ │ │ ├── Deep_BCI_Competition.ipynb │ │ │ ├── Deep_Our_Data.ipynb │ │ │ ├── FFT_BCI_Competition.ipynb │ │ │ ├── FFT_Our_Data.ipynb │ │ │ ├── Overview.ipynb │ │ │ ├── Shallow_BCI_Competition.ipynb │ │ │ └── Shallow_Our_Data.ipynb │ └── tutorials │ │ ├── Artificial_Example.ipynb │ │ ├── CSP.ipynb │ │ ├── CSP_Experiments_Result_Printing.ipynb │ │ ├── Envelope_Correlation.ipynb │ │ ├── Existing_Experiment.ipynb │ │ ├── Experiment.ipynb │ │ ├── Experiment_Training_And_Config_Example.ipynb │ │ ├── Kaggle_Grasp_Lift_Competition.ipynb │ │ ├── Movement_Decoding_Basic.ipynb │ │ ├── Movement_Decoding_Deep_Net.ipynb │ │ └── Perturbation.ipynb ├── online │ ├── README.md │ ├── __init__.py │ ├── coordinator.py │ ├── data_processor.py │ ├── dummy_signal_client.py │ ├── dummy_ui_client.py │ ├── dummy_ui_server.py │ ├── dynamic_stop.py │ ├── file_client.py │ ├── live_plot.py │ ├── model.py │ ├── objectives.py │ ├── perturbation.py │ ├── plot_server.py │ ├── ring_buffer.py │ ├── server.py │ └── trainer.py ├── paper │ ├── __init__.py │ ├── amp_corrs.py │ ├── confusion_mat.py │ ├── csp_patterns.py │ ├── env_corrs.py │ ├── fft.py │ ├── plot.py │ └── results.py ├── recurrent │ ├── __init__.py │ ├── lstm.py │ └── models.py ├── results │ ├── __init__.py │ └── results.py ├── scripts │ ├── __init__.py │ ├── create_hyperopt_files.py │ ├── diff_parsed_experiment.py │ ├── fix_iterator_results.py │ ├── generate_cluster_job.py │ ├── perturb_array_job.pbs │ ├── print_results.py │ ├── train_experiments.py │ ├── train_multiple_jobs.py │ └── train_on_cluster.py ├── test │ ├── __init__.py │ ├── acceptance_tests │ │ ├── experiments │ │ │ ├── test_experiment.py │ │ │ └── test_parse.py │ │ └── veganlasagne │ │ │ └── test_layers.py │ ├── datasets │ │ └── bci_competition_4_2a.py │ ├── unit_tests │ │ ├── analysis │ │ │ ├── test_cluster.py │ │ │ ├── test_heatmap.py │ │ │ ├── test_kaggle.py │ │ │ ├── test_patterns.py │ │ │ └── test_stats.py │ │ ├── datahandling │ │ │ ├── test_batch_iteration.py │ │ │ ├── test_batch_modifier.py │ │ │ ├── test_dataset_splitter.py │ │ │ └── test_preprocessing.py │ │ ├── datasets │ │ │ ├── test_generate_filterbank.py │ │ │ └── test_trial_segmenter.py │ │ ├── experiments │ │ │ └── test_parse.py │ │ ├── mywyrm │ │ │ ├── test_clean.py │ │ │ └── test_lda_train.py │ │ ├── online │ │ │ ├── test_data_processor.py │ │ │ └── test_predictor.py │ │ └── veganlasagne │ │ │ ├── test_layers.py │ │ │ ├── test_monitors.py │ │ │ └── test_objectives.py │ └── util.py ├── util.py └── veganlasagne │ ├── __init__.py │ ├── batch_norm.py │ ├── clip.py │ ├── layer_modifiers.py │ ├── layer_util.py │ ├── layers.py │ ├── monitors.py │ ├── nonlinearities.py │ ├── objectives.py │ ├── pool.py │ ├── random_switch.py │ ├── recurrent.py │ ├── remember.py │ ├── residual_net.py │ ├── stopping.py │ ├── tensor_dot.py │ └── update_modifiers.py ├── matlab ├── convert_gdf_to_hdf5.m └── convert_gdf_to_hdf5_with_test_labels.m ├── report ├── deep_explanation.svg ├── elu.svg ├── parallel_explanation.svg ├── parallel_explanation_2.svg ├── shallow_square_explanation.svg └── shallow_square_explanation_with_grid.svg ├── requirements.txt └── setup.py /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/robintibor/braindevel/HEAD/Makefile -------------------------------------------------------------------------------- /Readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/robintibor/braindevel/HEAD/Readme.md -------------------------------------------------------------------------------- /braindecode/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/robintibor/braindevel/HEAD/braindecode/Makefile 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