├── .gitignore
├── .hpc.metadata
├── DESCRIPTION
├── Makefile
├── OWNER
├── bootstrap.sh
├── graphs
└── default
│ └── hpc.xml
├── include
├── applets
│ └── __init__.py
└── installclass
│ ├── frontend.py
│ ├── ia64.py
│ └── master-keys.py
├── manifest
├── nodes
├── benchmarks.xml
├── frontend.xml
├── hpc-base.xml
├── hpc-client.xml
├── hpc-server.xml
├── mpi.xml
└── pvm.xml
├── src
├── Makefile
├── RPMS
│ └── Makefile
├── iozone
│ ├── Makefile
│ ├── i386.mk
│ ├── patch-files
│ │ └── iozone3_397
│ │ │ └── src
│ │ │ └── current
│ │ │ └── makefile
│ ├── sunos.mk
│ ├── version.mk
│ └── x86_64.mk
├── iperf
│ ├── Makefile
│ ├── patch-files
│ │ ├── iperf-2.0.1
│ │ │ └── compat
│ │ │ │ └── Thread.c
│ │ ├── iperf-2.0.4
│ │ │ └── sunos
│ │ │ │ ├── Makefile.in
│ │ │ │ ├── compat
│ │ │ │ ├── Makefile.in
│ │ │ │ └── Thread.c
│ │ │ │ └── src
│ │ │ │ └── Makefile.in
│ │ └── iperf-2.0.5
│ │ │ └── sunos
│ │ │ ├── Makefile.in
│ │ │ ├── compat
│ │ │ └── Makefile.in
│ │ │ └── src
│ │ │ └── Makefile.in
│ ├── sunos.mk
│ └── version.mk
├── iperf3
│ ├── Makefile
│ └── version.mk
├── linux.mk
├── mpi-tests
│ ├── Makefile
│ ├── Makefile.tests
│ ├── mpi-ring.c
│ ├── mpi-verify.c
│ ├── sunos.mk
│ └── version.mk
├── mpich3
│ ├── Makefile
│ └── version.mk
├── openmpi
│ ├── Makefile
│ ├── mpi-selector
│ │ ├── rocks-openmpi-1.4.3.csh
│ │ └── rocks-openmpi-1.4.3.sh
│ └── version.mk
├── pvm
│ ├── Makefile
│ ├── Readme.rocks
│ ├── pvm.csh
│ ├── pvm.sh
│ └── version.mk
├── rocks-hpc-profile
│ ├── Makefile
│ ├── rocks-hpc.csh
│ ├── rocks-hpc.sh
│ └── version.mk
├── rocks-openmpi-modules
│ ├── Makefile
│ ├── rocks-openmpi.in
│ ├── rocks-openmpi_ib.in
│ └── version.mk
├── stream
│ ├── HISTORY.txt
│ ├── LICENSE.txt
│ ├── Makefile
│ ├── Makefile.stream
│ ├── READ.ME
│ ├── ROCKS.txt
│ ├── TO_DO
│ ├── Versions
│ │ ├── READ.ME
│ │ ├── second_cpu.c
│ │ ├── second_cpu.f
│ │ ├── stream_5-10_posix_memalign.c
│ │ ├── stream_d.c
│ │ ├── stream_d.f
│ │ ├── stream_mpi.c
│ │ ├── stream_mpi.f
│ │ ├── stream_omp.c
│ │ └── stream_tuned.f
│ ├── linux.mk
│ ├── mysecond.c
│ ├── stream.c
│ ├── stream.f
│ ├── sunos.mk
│ └── version.mk
├── sunos.mk
└── usersguide
│ ├── Makefile
│ ├── appendix.sgml
│ ├── images
│ └── hpc.png
│ ├── index.sgml
│ ├── installing.sgml
│ ├── interactive.sgml
│ ├── preface.sgml
│ ├── using.sgml
│ └── version.mk
└── version.mk
/.gitignore:
--------------------------------------------------------------------------------
1 |
2 | # build directory
3 | BUILD/
4 | RPMS/
5 | SOURCES/
6 | SPECS/
7 |
8 |
9 | *.pyc
10 |
11 | _os
12 | _arch
13 | _distribution
14 |
15 | # ignore version.mk
16 | rocks-version.mk
17 | rocks-version-common.mk
18 |
19 | # ignore python.mk
20 | python.mk
21 |
22 | # ignore Rules files
23 | Rules-install.mk
24 | Rules-linux-centos.mk
25 | Rules-linux.mk
26 | Rules-rcfiles.mk
27 | Rules-scripts.mk
28 | Rules.mk
29 | Rolls.mk
30 |
31 | # --- BEGIN --- binaries files
32 | src/iozone/iozone3_397.tar
33 | src/iperf/iperf-2.0.5.tar.gz
34 | src/mpich2/mpich2-1.4.1p1.tar.gz
35 | src/openmpi/openmpi-1.4.3.tar.bz2
36 | src/openmpi/openmpi-1.6.2.tar.bz2
37 | src/pvm/pvm3-examples.tar
38 | src/RPMS/pvm-3.4.6-1.el6.i686.rpm
39 | src/RPMS/pvm-3.4.6-1.el6.x86_64.rpm
40 | src/RPMS/pvm-gui-3.4.6-1.el6.i686.rpm
41 | src/RPMS/pvm-gui-3.4.6-1.el6.x86_64.rpm
42 | src/sun-ct/sun-hpc-ct-8.2.1-docs.tar.gz
43 | src/sun-ct/sun-hpc-ct-8.2.1-Linux-gnu.tar.gz
44 | src/sun-ct/sun-hpc-ct-8.2.1-SunOS-i386.tar.gz
45 | # --- END ---
46 |
--------------------------------------------------------------------------------
/.hpc.metadata:
--------------------------------------------------------------------------------
1 | 6095a38542286376f6eb2a203f253dc4c31ddeda src/iozone/iozone3_397.tar 0B0LD0shfkvCRNDF0TEozcFlUczA
2 | 7302792dcb1bd7aeba032fef6d3dcc310e4d113f src/iperf/iperf-2.0.5.tar.gz 0B0LD0shfkvCRSnZLTWRwSW9RWHc
3 | 8dcc8888fb27232eb8f76c11cc890f1c3c483804 src/mpich2/mpich2-1.4.1p1.tar.gz 0B0LD0shfkvCRUjRJTHFoM2Qwa00
4 | 40f1ad9a3262cac513e3ec4982826ba6f825f81e src/pvm/pvm3-examples.tar 0B0LD0shfkvCRcnB6VFZWeDhZajg
5 | 5c58f3db22aa26b3801eb1e01d5bc6dc9c261b6d src/RPMS/pvm-3.4.6-1.el6.i686.rpm 0B0LD0shfkvCRdnhJUWduQW9mSmM
6 | 9a662be82390cdae30406b1dee57e299d54634c5 src/RPMS/pvm-3.4.6-1.el6.x86_64.rpm 0B0LD0shfkvCRYzB2MTdhTjY4cmc
7 | f4ca2bd8c8db02c9a6fa811f67a21576d9ba3161 src/RPMS/pvm-gui-3.4.6-1.el6.i686.rpm 0B0LD0shfkvCROHlNUFlmZnU3OG8
8 | 378424a5edd7e11dfa8d7210f80b9e9891d88701 src/RPMS/pvm-gui-3.4.6-1.el6.x86_64.rpm 0B0LD0shfkvCRU2VheVdTYzB6dFE
9 | 47e1b9acfd87fedea6cfdeea4c2c7f6db1ddf397 src/openmpi/openmpi-1.10.0.tar.gz 0B0LD0shfkvCReTNHWXZJOWJpdEE
10 | cbbae7608fe67d3bc79145b03e28af7b69f12800 src/openmpi/openmpi-2.1.1.tar.gz 0B0LD0shfkvCRaXptcVVOWm8yc0U
11 | 68c51309ad24e04b4a1f0bf6be3c1c6f37faef38 src/iozone/iozone3_465.tar 0B0LD0shfkvCRS1AyZ1BJWUtpYjQ
12 | 5fae7df02f750b6966837b554f9985a9c574236f src/mpich3/mpich-3.2.tar.gz 0B0LD0shfkvCRMXFBTWJoQTdPWjg
13 | 186cdc40903e880d29c0887fff2de5931e9a9caf src/iperf3/iperf-3.3.tar.gz 1HwFze4P9NH6H42kbPWw9vLUV2vYN76dh
14 |
--------------------------------------------------------------------------------
/DESCRIPTION:
--------------------------------------------------------------------------------
1 | High Performance Computing
2 |
--------------------------------------------------------------------------------
/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.23 2012/11/27 00:49:00 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.23 2012/11/27 00:49:00 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.22 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.21 2011/07/23 02:31:02 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.20 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.19 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.18 2008/10/18 00:56:09 mjk
75 | # copyright 5.1
76 | #
77 | # Revision 1.17 2008/10/15 20:13:04 mjk
78 | # - more changes to build outside of the tree
79 | # - removed some old fds-only targets
80 | #
81 | # Revision 1.16 2008/03/06 23:41:52 mjk
82 | # copyright storm on
83 | #
84 | # Revision 1.15 2007/06/23 04:03:38 mjk
85 | # mars hill copyright
86 | #
87 | # Revision 1.14 2006/09/11 22:48:45 mjk
88 | # monkey face copyright
89 | #
90 | # Revision 1.13 2006/08/10 00:10:50 mjk
91 | # 4.2 copyright
92 | #
93 | # Revision 1.12 2005/10/12 18:09:39 mjk
94 | # final copyright for 4.1
95 | #
96 | # Revision 1.11 2005/09/16 01:03:16 mjk
97 | # updated copyright
98 | #
99 | # Revision 1.10 2005/05/24 21:22:41 mjk
100 | # update copyright, release is not any closer
101 | #
102 | # Revision 1.9 2004/03/25 03:16:06 bruno
103 | # touch 'em all!
104 | #
105 | # update version numbers to 3.2.0 and update copyrights
106 | #
107 | # Revision 1.8 2003/08/13 17:18:51 bruno
108 | # put in rocks copyright for 3.0.0
109 | #
110 | # Revision 1.7 2003/08/13 15:22:53 bruno
111 | # added public domain dedication
112 | #
113 | # Revision 1.6 2003/07/22 22:30:56 bruno
114 | # cleanup
115 | #
116 | # Revision 1.5 2003/07/22 22:01:42 bruno
117 | # changes for roll building
118 | #
119 | # Revision 1.4 2003/07/21 19:34:42 bruno
120 | # moved some 'clean' code up to etc files
121 | #
122 | # Revision 1.3 2003/07/11 23:55:08 bruno
123 | # touchup on the rolls
124 | #
125 | # Revision 1.2 2003/07/10 22:20:20 bruno
126 | # closer
127 | #
128 | # Revision 1.1 2003/07/07 20:47:51 bruno
129 | # initial release
130 | #
131 | #
132 | #
133 |
134 | -include $(ROLLSROOT)/etc/Rolls.mk
135 | include Rolls.mk
136 |
137 |
138 | default: roll
139 |
140 |
--------------------------------------------------------------------------------
/OWNER:
--------------------------------------------------------------------------------
1 | Rocks
2 |
--------------------------------------------------------------------------------
/bootstrap.sh:
--------------------------------------------------------------------------------
1 | #!/bin/sh
2 | #
3 | # This file should remain OS independent
4 | #
5 | # $Id: bootstrap.sh,v 1.17 2012/11/27 19:31:18 phil Exp $
6 | #
7 | # @Copyright@
8 | #
9 | # Rocks(r)
10 | # www.rocksclusters.org
11 | # version 6.2 (SideWinder)
12 | # version 7.0 (Manzanita)
13 | #
14 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
15 | # All rights reserved.
16 | #
17 | # Redistribution and use in source and binary forms, with or without
18 | # modification, are permitted provided that the following conditions are
19 | # met:
20 | #
21 | # 1. Redistributions of source code must retain the above copyright
22 | # notice, this list of conditions and the following disclaimer.
23 | #
24 | # 2. Redistributions in binary form must reproduce the above copyright
25 | # notice unmodified and in its entirety, this list of conditions and the
26 | # following disclaimer in the documentation and/or other materials provided
27 | # with the distribution.
28 | #
29 | # 3. All advertising and press materials, printed or electronic, mentioning
30 | # features or use of this software must display the following acknowledgement:
31 | #
32 | # "This product includes software developed by the Rocks(r)
33 | # Cluster Group at the San Diego Supercomputer Center at the
34 | # University of California, San Diego and its contributors."
35 | #
36 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
37 | # neither the name or logo of this software nor the names of its
38 | # authors may be used to endorse or promote products derived from this
39 | # software without specific prior written permission. The name of the
40 | # software includes the following terms, and any derivatives thereof:
41 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
42 | # the associated name, interested parties should contact Technology
43 | # Transfer & Intellectual Property Services, University of California,
44 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
45 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
46 | #
47 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
48 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
49 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
50 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
51 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
52 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
53 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
54 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
55 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
56 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
57 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
58 | #
59 | # @Copyright@
60 | #
61 | # $Log: bootstrap.sh,v $
62 | # Revision 1.17 2012/11/27 19:31:18 phil
63 | # compile/install rocks-openmpi, rocks-openmpi-modules so that elements in bio roll will build
64 | #
65 | # Revision 1.16 2012/11/27 00:49:00 phil
66 | # Copyright Storm for Emerald Boa
67 | #
68 | # Revision 1.15 2012/09/30 21:58:55 phil
69 | # Update openmpi to 1.6.2.
70 | # Create Modules for ethernet and IB
71 | # Add IB support - packages, openmpi configuration, udev rules
72 | #
73 | # Revision 1.14 2012/05/06 05:49:09 phil
74 | # Copyright Storm for Mamba
75 | #
76 | # Revision 1.13 2011/07/23 02:31:02 phil
77 | # Viper Copyright
78 | #
79 | # Revision 1.12 2010/09/07 23:53:20 bruno
80 | # star power for gb
81 | #
82 | # Revision 1.11 2009/12/03 22:36:55 bruno
83 | # openmpi directory makes an RPM named rocks-openmpi
84 | #
85 | # Revision 1.10 2009/11/25 23:43:20 anoop
86 | # bootstrapping the HPC roll for sunos
87 | #
88 | # Revision 1.9 2009/05/01 19:07:18 mjk
89 | # chimi con queso
90 | #
91 | # Revision 1.8 2008/10/18 00:56:09 mjk
92 | # copyright 5.1
93 | #
94 | # Revision 1.7 2008/10/15 20:13:04 mjk
95 | # - more changes to build outside of the tree
96 | # - removed some old fds-only targets
97 | #
98 | # Revision 1.6 2008/03/06 23:41:53 mjk
99 | # copyright storm on
100 | #
101 | # Revision 1.5 2007/06/23 04:03:38 mjk
102 | # mars hill copyright
103 | #
104 | # Revision 1.4 2006/09/11 22:48:45 mjk
105 | # monkey face copyright
106 | #
107 | # Revision 1.3 2006/08/10 00:10:50 mjk
108 | # 4.2 copyright
109 | #
110 | # Revision 1.2 2006/07/11 17:52:40 anoop
111 | # Added openmpi
112 | #
113 | # Revision 1.1 2006/07/03 19:56:41 bruno
114 | # bootstrap for hpc roll
115 | #
116 | # Revision 1.5 2006/02/07 22:00:30 mjk
117 | # *** empty log message ***
118 | #
119 | # Revision 1.4 2006/01/19 21:27:11 mjk
120 | # more foundation changes
121 | #
122 | # Revision 1.3 2006/01/18 06:12:41 mjk
123 | # more foundation work
124 | #
125 | # Revision 1.2 2006/01/17 03:45:58 mjk
126 | # might be complete now
127 | #
128 | # Revision 1.1 2006/01/17 00:14:23 mjk
129 | # bootstrap roll development
130 | #
131 |
132 | if [ ! -f "$ROLLSROOT/../../bin/get_sources.sh" ]; then
133 | echo "To compile this roll on Rocks 6.1.1 or older you need to install a newer rocks-devel rpm.
134 | Install it with:
135 | rpm -Uvh https://googledrive.com/host/0B0LD0shfkvCRRGtadUFTQkhoZWs/rocks-devel-6.2-3.x86_64.rpm
136 | If you need an older version of this roll you can get it from:
137 | https://github.com/rocksclusters-attic"
138 | exit 1
139 | fi
140 |
141 | . $ROLLSROOT/etc/bootstrap-functions.sh
142 |
143 | if [ `./_os` == "linux" ]; then
144 | yum -y install libibverbs libibverbs-devel libusnic_verbs
145 | install_os_packages hpc-base
146 | compile openmpi
147 | install rocks-openmpi
148 | compile_and_install rocks-openmpi-modules
149 | fi
150 |
151 | if [ `./_os` == "sunos" ]; then
152 | (cd src/sun-ct && gmake bootstrap)
153 | fi
154 |
--------------------------------------------------------------------------------
/graphs/default/hpc.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | The HPC Roll
8 |
9 |
10 |
11 |
12 | $Log: hpc.xml,v $
13 | Revision 1.45 2009/05/08 22:21:35 anoop
14 | Removed hpc-db from the mix
15 |
16 | Revision 1.44 2008/03/03 20:01:52 bruno
17 | hpc graph cleanup
18 |
19 | Revision 1.43 2007/12/03 20:32:00 bruno
20 | make HPC optional -- move critial services into base
21 |
22 | Revision 1.42 2006/07/07 20:11:34 bruno
23 | removed upgrade node -- now handled by restore roll
24 |
25 | Revision 1.41 2006/06/12 21:43:55 bruno
26 | cleanup
27 |
28 | Revision 1.40 2006/06/05 22:06:29 bruno
29 | moved insert-rolls from hpc to base
30 |
31 | Revision 1.39 2006/06/05 21:54:50 bruno
32 | moved PXE from hpc to base
33 |
34 | Revision 1.38 2006/06/05 17:57:38 bruno
35 | first steps towards 4.2 beta
36 |
37 | Revision 1.37 2005/10/03 20:23:57 bruno
38 | take out the code that indicates that a node previously PXE installed.
39 |
40 | this will force all reinstallations to use the installation kernel and initrd
41 | from the local hard disk.
42 |
43 | Revision 1.36 2005/09/19 22:08:36 bruno
44 | partitioning tuning.
45 |
46 | - the frontend and NAS appliance will no longer nuke all partitions before
47 | the partitioning screen
48 | - a NAS appliance always displays the partitioning screen
49 | - added a nas-exports node to make it easier for people to customize
50 | their export directories on NAS appliances
51 | - hardened the software raid partitioning code
52 |
53 | Revision 1.35 2005/06/01 01:47:44 bruno
54 | ia64 now uses same partitioning as real cpus
55 |
56 | Revision 1.34 2005/05/25 03:29:25 bruno
57 | need to ensure that all nodes that call 'dbreport' are after database-security
58 |
59 | Revision 1.33 2005/05/23 23:52:32 fds
60 | Moved to shepherd roll
61 |
62 | Revision 1.32 2005/03/16 03:36:29 fds
63 | Actually inserting selected rolls into database.
64 |
65 | Revision 1.31 2005/03/15 02:37:49 fds
66 | Insert selected rolls into the database during post processing. Must happen
67 | before rocks-dist is run again (in rocks-dist.xml).
68 |
69 | Revision 1.30 2005/03/08 00:56:10 fds
70 | Moved ganglia packages into roll. New greceptor node.
71 |
72 | Revision 1.29 2005/03/04 01:40:08 mjk
73 | massive graph cleanup
74 |
75 | Revision 1.28 2005/03/01 19:17:44 mjk
76 | whack dead node
77 |
78 | Revision 1.27 2005/03/01 17:34:02 mjk
79 | move 411 to hpc roll
80 |
81 | Revision 1.26 2005/02/16 01:19:49 mjk
82 | - per appliance firewall rules
83 | - empty root node (ordered last) for all appliances
84 |
85 | Revision 1.25 2005/02/16 00:40:03 mjk
86 | graph cleanup
87 |
88 | Revision 1.24 2004/12/22 03:06:16 bruno
89 | spliced out mpi-devel
90 |
91 | Revision 1.23 2004/11/02 00:47:36 fds
92 | Moved shepherd-client grub processing off base
93 |
94 | Revision 1.22 2004/08/24 01:58:03 fds
95 | Shepherd tweaks and svcs update structure.
96 |
97 | Revision 1.21 2004/05/05 00:53:01 fds
98 | Moved big mozilla packages off Rocks base.
99 |
100 | Revision 1.20 2004/04/26 20:12:01 fds
101 | Added rocks-boot-auto to frontend. It is off by default. Also put
102 | kickstart central host in app_globals if available.
103 |
104 | Revision 1.19 2004/04/13 20:53:51 fds
105 | Fixed compute node motd, and added link to news node.
106 |
107 | Revision 1.18 2004/03/24 23:37:47 fds
108 | Support for the everything appliance.
109 |
110 | Revision 1.17 2004/03/19 03:29:36 bruno
111 | frontend-wan is dead
112 |
113 | frontend-base and compute-base are the new nodes in which to derive new
114 | appliances
115 |
116 | Revision 1.16 2004/03/04 19:33:31 fds
117 | Moving from sendmail to Postfix.
118 |
119 | Revision 1.15 2004/03/04 00:04:03 bruno
120 | eject-cd no longer used
121 |
122 | Revision 1.14 2004/02/04 17:39:39 bruno
123 | on what interface do you want to install?
124 |
125 | Revision 1.13 2004/02/03 00:32:53 fds
126 | Ensuring the Roll screens come first.
127 |
128 | Revision 1.12 2004/02/02 21:08:10 fds
129 | Doing it the right way. A new frontend-wan file defines the main
130 | kickstart section for Wide Area kickstart installs (instead of
131 | hard-coding it in kcgi.)
132 |
133 | Revision 1.11 2004/01/31 19:56:47 mjk
134 | hpc-node removed
135 |
136 | Revision 1.10 2003/11/03 05:21:58 bruno
137 | removed build-host
138 |
139 | Revision 1.9 2003/10/30 23:03:06 bruno
140 | build appliance support
141 |
142 | Revision 1.8 2003/10/29 17:59:21 mjk
143 | remove pbs from roll
144 |
145 | Revision 1.7 2003/10/23 02:02:23 fds
146 | Sorted out ganglia graph ordering.
147 |
148 | Revision 1.6 2003/10/16 22:21:16 fds
149 | Kickstart graph changes for opteron.
150 |
151 | Revision 1.5 2003/10/16 18:22:04 bruno
152 | changes for x86_64
153 |
154 | Revision 1.4 2003/10/02 20:32:01 fds
155 | PXE coordination is done by dhcp, so activate it for all platforms.
156 |
157 | Revision 1.3 2003/09/26 18:33:04 bruno
158 | closer to 9
159 |
160 | Revision 1.2 2003/07/12 00:49:30 bruno
161 | all nodes install a ganglia client
162 |
163 | Revision 1.1 2003/07/07 20:47:51 bruno
164 | initial release
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 | frontend
175 | pvm
176 |
177 |
178 |
179 |
180 | benchmarks
181 | mpi
182 |
183 |
184 |
185 |
--------------------------------------------------------------------------------
/include/applets/__init__.py:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/rocksclusters/hpc/28a3cf574eb892c85a834613d28588bce0035fac/include/applets/__init__.py
--------------------------------------------------------------------------------
/include/installclass/ia64.py:
--------------------------------------------------------------------------------
1 | # $Id: ia64.py,v 1.19 2012/11/27 00:49:00 phil Exp $
2 | #
3 | # @Copyright@
4 | #
5 | # Rocks(r)
6 | # www.rocksclusters.org
7 | # version 6.2 (SideWinder)
8 | # version 7.0 (Manzanita)
9 | #
10 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
11 | # All rights reserved.
12 | #
13 | # Redistribution and use in source and binary forms, with or without
14 | # modification, are permitted provided that the following conditions are
15 | # met:
16 | #
17 | # 1. Redistributions of source code must retain the above copyright
18 | # notice, this list of conditions and the following disclaimer.
19 | #
20 | # 2. Redistributions in binary form must reproduce the above copyright
21 | # notice unmodified and in its entirety, this list of conditions and the
22 | # following disclaimer in the documentation and/or other materials provided
23 | # with the distribution.
24 | #
25 | # 3. All advertising and press materials, printed or electronic, mentioning
26 | # features or use of this software must display the following acknowledgement:
27 | #
28 | # "This product includes software developed by the Rocks(r)
29 | # Cluster Group at the San Diego Supercomputer Center at the
30 | # University of California, San Diego and its contributors."
31 | #
32 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
33 | # neither the name or logo of this software nor the names of its
34 | # authors may be used to endorse or promote products derived from this
35 | # software without specific prior written permission. The name of the
36 | # software includes the following terms, and any derivatives thereof:
37 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
38 | # the associated name, interested parties should contact Technology
39 | # Transfer & Intellectual Property Services, University of California,
40 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
41 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
42 | #
43 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
44 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
45 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
46 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
47 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
48 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
49 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
50 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
51 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
52 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
53 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
54 | #
55 | # @Copyright@
56 | #
57 | # $Log: ia64.py,v $
58 | # Revision 1.19 2012/11/27 00:49:00 phil
59 | # Copyright Storm for Emerald Boa
60 | #
61 | # Revision 1.18 2012/05/06 05:49:09 phil
62 | # Copyright Storm for Mamba
63 | #
64 | # Revision 1.17 2011/07/23 02:31:03 phil
65 | # Viper Copyright
66 | #
67 | # Revision 1.16 2010/09/07 23:53:20 bruno
68 | # star power for gb
69 | #
70 | # Revision 1.15 2009/05/01 19:07:18 mjk
71 | # chimi con queso
72 | #
73 | # Revision 1.14 2008/10/18 00:56:09 mjk
74 | # copyright 5.1
75 | #
76 | # Revision 1.13 2008/03/06 23:41:53 mjk
77 | # copyright storm on
78 | #
79 | # Revision 1.12 2007/06/23 04:03:38 mjk
80 | # mars hill copyright
81 | #
82 | # Revision 1.11 2006/09/11 22:48:46 mjk
83 | # monkey face copyright
84 | #
85 | # Revision 1.10 2006/08/10 00:10:50 mjk
86 | # 4.2 copyright
87 | #
88 | # Revision 1.9 2006/06/05 17:57:39 bruno
89 | # first steps towards 4.2 beta
90 | #
91 | # Revision 1.8 2005/10/12 18:09:40 mjk
92 | # final copyright for 4.1
93 | #
94 | # Revision 1.7 2005/09/16 01:03:17 mjk
95 | # updated copyright
96 | #
97 | # Revision 1.6 2005/05/24 21:22:42 mjk
98 | # update copyright, release is not any closer
99 | #
100 | # Revision 1.5 2005/03/31 22:47:37 fds
101 | # Cleanup duplicate code
102 | #
103 | # Revision 1.4 2004/03/25 03:16:08 bruno
104 | # touch 'em all!
105 | #
106 | # update version numbers to 3.2.0 and update copyrights
107 | #
108 | # Revision 1.3 2003/08/13 17:18:51 bruno
109 | # put in rocks copyright for 3.0.0
110 | #
111 | # Revision 1.2 2003/08/13 15:22:53 bruno
112 | # added public domain dedication
113 | #
114 | # Revision 1.1 2003/07/07 20:47:51 bruno
115 | # initial release
116 | #
117 | # Revision 1.3 2003/05/22 16:36:35 mjk
118 | # copyright
119 | #
120 | # Revision 1.2 2003/04/25 18:15:09 bruno
121 | # first pass at adding all the new rocks config screens
122 | #
123 | # Revision 1.1 2003/04/24 16:59:41 mjk
124 | # - add order tags
125 | # - edge and order tags can have children
126 | # This just make the graph look nicer, no functional change
127 | # - added include directory
128 | # - moved install class code into include directory
129 | # - dependecies enforced via topological sort
130 | # - weight attributes are dead
131 | # - long live order tags
132 | # - the 'gen' attribute is currently ignored. This will be used to support
133 | # other graph ordering requirements (e.g. testing, cfengine, ...)
134 | #
135 |
136 |
137 | from kickstart import *
138 | from users import *
139 |
140 | class CustomKickstart(RocksCustomKickstart):
141 |
142 | def getEFIDiskInfo(self):
143 | efipartname = ''
144 |
145 | #
146 | # before we read the partitions, make sure the kernel
147 | # can see all the partitions on all the drives.
148 | #
149 | cmd = '/tmp/updates/rocks/bin/make-bootable-disks ' \
150 | + '> /dev/null 2>&1'
151 | os.system(cmd)
152 |
153 | #
154 | # now walk through all the partitions
155 | #
156 | file = open('/proc/partitions', 'r')
157 |
158 | basedevname = 'this is the first entry'
159 |
160 | #
161 | # look for an EFI partition (but need to toss the
162 | # first two lines)
163 | #
164 | lines = file.readlines()
165 | for line in lines[2:]:
166 | tokens = string.split(line)
167 |
168 | major = tokens[0]
169 | minor = tokens[1]
170 | blocks = tokens[2]
171 | devname = tokens[3]
172 |
173 | match = string.count(devname, basedevname)
174 |
175 | if match == 0:
176 | basedevname = devname
177 | else:
178 | #
179 | # make the device node
180 | #
181 | devicename = tempfile.mktemp()
182 |
183 | os.system('mknod %s b %s %s' %
184 | (devicename, major, minor))
185 |
186 | #
187 | # make the mount point
188 | #
189 | mountpoint = tempfile.mktemp()
190 | os.makedirs(mountpoint)
191 |
192 | #
193 | # mount the device
194 | #
195 | os.system('mount %s %s' \
196 | % (devicename, mountpoint) + \
197 | ' > /dev/null 2>&1')
198 |
199 | if os.path.exists(mountpoint + '/startup.nsh'):
200 | #
201 | # assign the name of the rocks
202 | # root partition
203 | #
204 | efipartname = devname
205 |
206 | os.system('umount %s' % (mountpoint) +
207 | ' > /dev/null 2>&1')
208 |
209 | os.removedirs(mountpoint)
210 | os.unlink(devicename)
211 |
212 | return efipartname
213 |
214 | def diskPartition(self, id):
215 | self.id = id
216 |
217 | # raise NameError, 'in diskPartition'
218 |
219 | rootpartname, devnames = RocksCustomKickstart.getDiskInfo(self)
220 |
221 | if rootpartname != '':
222 | #
223 | # rocks has been installed on this node before.
224 | # just reinstall the base operating environment,
225 | # that is, reinstall '/' but leave all the other
226 | # file systems alone.
227 | #
228 | efipartname = self.getEFIDiskInfo()
229 |
230 | args = [ "/boot/efi" , "--size" , "1",
231 | "--fstype", "vfat",
232 | "--onpart", efipartname ]
233 |
234 | #
235 | # set the values in the installer
236 | #
237 | KickstartBase.definePartition(self, id, args)
238 |
239 | else:
240 | args = [ "/boot/efi" , "--size" , "1000",
241 | "--fstype", "vfat",
242 | "--ondisk", devnames[0] ]
243 |
244 | KickstartBase.definePartition(self, id, args)
245 |
246 | #
247 | # call the diskPartition from the Rocks class
248 | #
249 | RocksCustomKickstart.diskPartition(self, id)
250 |
251 |
252 | def __init__(self, file, serial):
253 | RocksCustomKickstart.__init__(self, file, serial)
254 |
255 |
256 |
--------------------------------------------------------------------------------
/include/installclass/master-keys.py:
--------------------------------------------------------------------------------
1 | #
2 | # Get master crypto certificates. For frontends.
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: master-keys.py,v $
59 | # Revision 1.16 2012/11/27 00:49:00 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.15 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.14 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.13 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.12 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.11 2008/10/18 00:56:09 mjk
75 | # copyright 5.1
76 | #
77 | # Revision 1.10 2008/03/06 23:41:53 mjk
78 | # copyright storm on
79 | #
80 | # Revision 1.9 2007/06/23 04:03:38 mjk
81 | # mars hill copyright
82 | #
83 | # Revision 1.8 2006/09/11 22:48:46 mjk
84 | # monkey face copyright
85 | #
86 | # Revision 1.7 2006/08/10 00:10:50 mjk
87 | # 4.2 copyright
88 | #
89 | # Revision 1.6 2005/10/12 18:09:40 mjk
90 | # final copyright for 4.1
91 | #
92 | # Revision 1.5 2005/09/16 01:03:17 mjk
93 | # updated copyright
94 | #
95 | # Revision 1.4 2005/05/24 21:22:42 mjk
96 | # update copyright, release is not any closer
97 | #
98 | # Revision 1.3 2005/04/18 23:22:33 fds
99 | # Save important files before drives get nuked.
100 | #
101 | # Revision 1.2 2005/04/14 00:22:22 fds
102 | # Simpler master key management: on catastrophic recovery, we manually
103 | # move CA and 411 keys. Makes USB security key operation more intuitive.
104 | #
105 | # Revision 1.1 2005/04/12 01:56:15 fds
106 | # Moved certificate management earlier in the install process.
107 | #
108 | #
109 |
110 | def getRocksFrontendCerts():
111 | """Saves Grandfathered master keys and certs on old disks or
112 | USB keys. Keys on USB drive take priority. May already be there
113 | from frontend kickstart file ( section)."""
114 |
115 | #
116 | # Only proceed if we are on a frontend.
117 | #
118 | if not os.path.exists('/tmp/asked-for-rolls'):
119 | return
120 |
121 | partition = RocksPartition(0, 0, '', '',
122 | '/mnt/runtime/usr/sbin/e2label',
123 | '/tmp/etc/fstab')
124 |
125 | # Do not automatically copy master keys from the USB drive. If disaster
126 | # recovery is needed, move them by hand to the appropriate locations.
127 |
128 | # Master keys on disk from our previous installation
129 | keys = [('/etc/411-security/shared.key','/tmp/security/411-shared.key'),
130 | ('/etc/411-security/master.key','/tmp/security/411-master.key'),
131 | ('/etc/security/ca/ca.key','/tmp/security/ca.key'),
132 | ('/etc/security/ca/ca.crt','/tmp/security/ca.crt'),
133 | ('/etc/security/ca/ca.serial','/tmp/security/ca.serial')
134 | ]
135 |
136 | for src, dst in keys:
137 | partition.saveFile(src, dst)
138 |
139 | log("ROCKS:Frontend saved keys")
140 |
141 |
--------------------------------------------------------------------------------
/manifest:
--------------------------------------------------------------------------------
1 | iozone
2 | opt-iperf
3 | mpich2-ethernet-gnu
4 | mpi-tests
5 | rocks-hpc-profile
6 | rocks-openmpi
7 | rocks-openmpi-modules
8 | rocks-pvm
9 | roll-hpc-kickstart
10 | roll-hpc-usersguide
11 | stream
12 | sunct-extra
13 | ClusterTools_gnu
14 |
--------------------------------------------------------------------------------
/nodes/benchmarks.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 | Benchmark applications
7 |
8 |
9 |
10 |
11 | $Log: benchmarks.xml,v $
12 | Revision 1.11 2008/11/30 18:59:50 anoop
13 | Cleanup of graph and node files
14 | Moved sun cluster tools from surya to aurora - need
15 | to find a permanent home
16 |
17 | Revision 1.10 2008/04/07 23:05:34 bruno
18 | nuke atlas and hpl
19 |
20 | Revision 1.9 2005/02/17 01:32:01 bruno
21 | moved iperf source into the hpc roll
22 |
23 | Revision 1.8 2005/02/17 01:05:18 bruno
24 | moved stream into the hpl roll
25 |
26 | Revision 1.7 2005/02/16 00:40:04 mjk
27 | graph cleanup
28 |
29 | Revision 1.6 2005/02/01 23:37:10 mjk
30 | remove roll attrs
31 |
32 | Revision 1.5 2004/03/28 15:40:38 bruno
33 | now using iozone SRPM from official web site
34 |
35 | Revision 1.4 2004/02/03 00:57:25 mjk
36 | decolorize / derollize
37 |
38 | Revision 1.3 2004/01/30 00:22:54 mjk
39 | color hpc green
40 |
41 | Revision 1.2 2003/07/08 18:37:14 bruno
42 | collapsed hpl-eth and hpl-myri into just hpl
43 |
44 | Revision 1.1 2003/07/07 20:47:51 bruno
45 | initial release
46 |
47 | Revision 1.5 2002/11/14 23:43:24 bruno
48 | added atlas and hpl-eth back in
49 |
50 | Revision 1.4 2002/11/13 20:19:19 mjk
51 | more ia64 changes
52 |
53 | Revision 1.3 2002/10/10 05:01:24 bruno
54 | added iozone
55 |
56 | Revision 1.2 2002/10/09 20:27:24 bruno
57 | updated 'contrib' package names
58 |
59 | Revision 1.1 2002/10/02 19:28:49 bruno
60 | put all benchmarks into one .xml file
61 |
62 |
63 |
64 |
65 | stream
66 | ROCKSstream
67 |
68 |
69 | opt-iperf
70 | ROCKSiperf
71 |
72 |
73 | iozone
74 | ROCKSiozone
75 |
76 |
77 |
--------------------------------------------------------------------------------
/nodes/frontend.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | A Rocks Cluster Frontend machine. This is your login host.
8 |
9 |
10 |
11 |
12 | $Log: frontend.xml,v $
13 | Revision 1.18 2008/01/14 19:54:55 bruno
14 | make the frontend XML node just a connection point. all functionality is
15 | moved into the base Roll.
16 |
17 | Revision 1.17 2007/12/03 20:32:00 bruno
18 | make HPC optional -- move critial services into base
19 |
20 | Revision 1.16 2007/08/13 19:32:00 bruno
21 | rename rocks-config-frontend to rocks-config-server
22 |
23 | Revision 1.15 2006/06/22 22:14:21 bruno
24 | Kickstart_PartsizeRoot and Kickstart_PartsizeSwap moved into base roll
25 |
26 | Revision 1.14 2006/01/27 22:29:44 bruno
27 | stable (mostly) after integration of new foundation and localization code
28 |
29 | Revision 1.13 2005/04/14 00:22:23 fds
30 | Simpler master key management: on catastrophic recovery, we manually
31 | move CA and 411 keys. Makes USB security key operation more intuitive.
32 |
33 | Revision 1.12 2005/04/12 01:56:15 fds
34 | Moved certificate management earlier in the install process.
35 |
36 | Revision 1.11 2005/03/24 23:00:38 bruno
37 | fix for CD-based installs
38 |
39 | Revision 1.10 2005/03/04 01:40:08 mjk
40 | massive graph cleanup
41 |
42 | Revision 1.4 2005/02/16 00:40:04 mjk
43 | graph cleanup
44 |
45 | Revision 1.3 2005/02/01 23:37:10 mjk
46 | remove roll attrs
47 |
48 | Revision 1.2 2004/04/28 17:34:19 bruno
49 | added support for variable-sized root and swap partitions
50 |
51 | Revision 1.1 2004/03/19 03:29:36 bruno
52 | frontend-wan is dead
53 |
54 | frontend-base and compute-base are the new nodes in which to derive new
55 | appliances
56 |
57 | Revision 1.6 2004/02/12 00:38:50 fds
58 | More inline with config-frontend.
59 |
60 | Revision 1.5 2004/02/03 00:57:25 mjk
61 | decolorize / derollize
62 |
63 | Revision 1.4 2004/01/30 00:22:54 mjk
64 | color hpc green
65 |
66 | Revision 1.3 2003/08/06 00:14:34 fds
67 | More explicit
68 |
69 | Revision 1.2 2003/07/23 21:21:59 fds
70 | Added RRD restoration, remove unneeded perl logic.
71 |
72 | Revision 1.1 2003/07/07 20:47:51 bruno
73 | initial release
74 |
75 | Revision 1.13 2003/04/25 18:15:09 bruno
76 | first pass at adding all the new rocks config screens
77 |
78 | Revision 1.12 2003/04/24 16:59:41 mjk
79 | - add order tags
80 | - edge and order tags can have children
81 | This just make the graph look nicer, no functional change
82 | - added include directory
83 | - moved install class code into include directory
84 | - dependecies enforced via topological sort
85 | - weight attributes are dead
86 | - long live order tags
87 | - the 'gen' attribute is currently ignored. This will be used to support
88 | other graph ordering requirements (e.g. testing, cfengine, ...)
89 |
90 | Revision 1.11 2002/11/27 04:56:54 bruno
91 | fix: can now have user-settable NIS domains
92 |
93 | Revision 1.10 2002/10/09 23:16:27 bruno
94 | fixup of package names to match our new source tree
95 |
96 | Revision 1.9 2002/10/09 21:05:14 bruno
97 | we can now build a cdrom again (after source tree reorganization)
98 |
99 | Revision 1.8 2002/09/12 18:44:41 bruno
100 | more 2.3 changes
101 |
102 | Revision 1.7 2002/07/10 18:54:03 bruno
103 | changes to make 7.3 installation from CD work
104 |
105 | Revision 1.6 2002/07/03 23:33:11 bruno
106 | 7.3 fixes
107 |
108 | Revision 1.5 2002/02/15 21:44:09 mjk
109 | Release and DTF changes
110 |
111 | Revision 1.4 2002/02/02 02:21:53 bruno
112 | slim down number of packages installed
113 |
114 | Revision 1.3 2001/11/09 23:50:54 mjk
115 | - Post release ia64 changes
116 |
117 | Revision 1.2 2001/11/06 18:12:40 mjk
118 | - Made emacs its own node (reuse in frontend and standalone)
119 | - removed Victor's NFS stuff from accounting
120 | - public/private root passwords match on the form
121 | - Fixed private kickstart host on the form
122 |
123 | Revision 1.1 2001/10/15 23:13:01 bruno
124 | newer is better.
125 |
126 |
127 |
128 |
129 |
130 |
131 |
--------------------------------------------------------------------------------
/nodes/hpc-base.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 | The 'hpc node' in the graph.
7 |
8 | This file is used as a connection point for other XML configuration nodes
9 | that should be shared between all HPC appliances. Also contains common and
10 | popular libraries for HPC work.
11 |
12 |
13 |
14 | $Log: hpc-base.xml,v $
15 | Revision 1.16 2012/09/30 21:58:55 phil
16 | Update openmpi to 1.6.2.
17 | Create Modules for ethernet and IB
18 | Add IB support - packages, openmpi configuration, udev rules
19 |
20 | Revision 1.15 2012/05/06 01:11:06 phil
21 | Add default module definition for rocks-openmpi.
22 |
23 | Revision 1.14 2008/04/07 23:05:34 bruno
24 | nuke atlas and hpl
25 |
26 | Revision 1.13 2007/12/03 20:32:00 bruno
27 | make HPC optional -- move critial services into base
28 |
29 | Revision 1.12 2006/02/15 00:59:51 mjk
30 | added tantakel
31 |
32 | Revision 1.11 2005/05/23 23:52:17 fds
33 | Moved to shepherd roll
34 |
35 | Revision 1.10 2005/03/04 01:40:08 mjk
36 | massive graph cleanup
37 |
38 | Revision 1.9 2005/02/16 00:40:04 mjk
39 | graph cleanup
40 |
41 | Revision 1.8 2004/10/04 19:27:44 fds
42 | Restricted cluster shepherd turned on. Takes no action until
43 | 'insert-sheep' is run on frontend.
44 |
45 | Revision 1.7 2004/09/13 22:27:15 fds
46 | Turn off shepherd by default.
47 |
48 | Revision 1.6 2004/08/24 01:58:02 fds
49 | Shepherd tweaks and svcs update structure.
50 |
51 | Revision 1.5 2004/08/09 23:48:08 fds
52 | Add shepard package
53 |
54 | Revision 1.4 2004/02/03 00:57:25 mjk
55 | decolorize / derollize
56 |
57 | Revision 1.3 2004/01/30 00:22:54 mjk
58 | color hpc green
59 |
60 | Revision 1.2 2003/10/22 22:47:33 fds
61 | Added atlas, moved syslinux
62 |
63 | Revision 1.1 2003/07/07 20:47:51 bruno
64 | initial release
65 |
66 |
67 | rocks-hpc-profile
68 | rocks-openmpi-modules
69 |
70 |
71 | compat-dapl
72 | compat-dapl-devel
73 | dapl
74 | dapl-utils
75 | dapl-devel
76 | ibutils
77 | ibutils
78 | infiniband-diags
79 | libibmad
80 | libibmad-devel
81 | libibumad
82 | libibumad-devel
83 | libibverbs
84 | libibverbs-devel
85 | libipathverbs
86 | libusnic_verbs
87 | libmlx4
88 | libmthca
89 | mpitests-openmpi
90 | rdma
91 |
92 |
93 |
94 | # Infiniband userspace needs to unlimited memlock limits
95 | * soft memlock unlimited
96 | * hard memlock unlimited
97 |
98 |
99 |
100 |
101 | KERNEL=="umad*", NAME="infiniband/%k", MODE="0666"
102 | KERNEL=="issm*", NAME="infiniband/%k", MODE="0666"
103 | KERNEL=="ucm*", NAME="infiniband/%k", MODE="0666"
104 | KERNEL=="rdma_cm*", NAME="infiniband/%k", MODE="0666"
105 | KERNEL=="uverbs*", NAME="infiniband/%k", MODE="0666"
106 |
107 |
108 |
109 | /sbin/chkconfig --level 3 rdma on
110 | /sbin/chkconfig --level 5 rdma on
111 |
112 |
113 |
114 |
--------------------------------------------------------------------------------
/nodes/hpc-client.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | cpus=`grep 'processor' /proc/cpuinfo | wc -l`
8 | maxstartups=$(echo "$cpus * 32" | bc)
9 |
10 | if [ $maxstartups -lt 32 ]
11 | then
12 | maxstartups=32
13 | fi
14 |
15 | export maxstartups
16 | echo "MaxStartups $maxstartups" >> /etc/ssh/sshd_config
17 |
18 |
19 |
20 |
21 |
--------------------------------------------------------------------------------
/nodes/hpc-server.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | The HPC packages and configuration specifications for a Rocks server (frontend).
8 |
9 |
10 |
11 |
12 | $Log: hpc-server.xml,v $
13 | Revision 1.6 2012/09/30 21:58:55 phil
14 | Update openmpi to 1.6.2.
15 | Create Modules for ethernet and IB
16 | Add IB support - packages, openmpi configuration, udev rules
17 |
18 | Revision 1.5 2009/03/06 21:42:59 bruno
19 | no longer need hpc-insert-ethers package since we killed mpich
20 |
21 | Revision 1.4 2008/04/24 23:51:16 bruno
22 | install the HPC roll users guide on the frontend
23 |
24 | Revision 1.3 2008/03/17 17:59:03 bruno
25 | put gfortran on the frontend
26 |
27 | Revision 1.2 2008/02/07 20:31:13 bruno
28 | moved an HPC-specific insert-ethers plugin into the HPC roll
29 |
30 |
31 |
32 |
33 | gcc-gfortran
34 | opensm
35 | roll-hpc-usersguide
36 | libibverbs-devel
37 |
38 |
39 |
40 | /sbin/chkconfig --level 3 opensm on
41 | /sbin/chkconfig --level 5 opensm on
42 |
43 |
44 |
45 |
--------------------------------------------------------------------------------
/nodes/mpi.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | MPI - The Message Passing Interface for
8 | computational clusters. Includes the MPD version
9 | with its fast job launcher.
10 |
11 |
12 |
13 |
14 | $Log: mpi.xml,v $
15 | Revision 1.46 2012/04/30 20:17:26 phil
16 | remove post-92 mpi-selector. Use enviornment-modules instead. But leave mpi-selector files in place
17 |
18 | Revision 1.45 2010/10/01 21:13:46 anoop
19 | Make rocks-openmpi the system default MPI
20 |
21 | Revision 1.44 2010/03/08 04:38:20 anoop
22 | Removed OpenMPI and Sun-CT from path and library path from Linux.
23 | Added mpi-selector capability for both
24 |
25 | Revision 1.43 2009/12/15 19:09:51 bruno
26 | new
27 |
28 | Revision 1.42 2009/11/25 23:34:24 anoop
29 | Upgraded to latest Sun HPC Cluster tools for SunOS
30 | Added patch for Sun HPC Cluster tools so that installation
31 | won't fail
32 |
33 | Revision 1.41 2009/06/26 00:57:56 anoop
34 | added sun-hpc cluster tools to the hpc roll
35 |
36 | Revision 1.40 2009/01/06 18:06:17 bruno
37 | nuked mpich
38 |
39 | Revision 1.39 2008/12/16 18:43:34 anoop
40 | Upgraded Sun cluster tools to 8.1
41 |
42 | Revision 1.38 2008/11/30 18:59:50 anoop
43 | Cleanup of graph and node files
44 | Moved sun cluster tools from surya to aurora - need
45 | to find a permanent home
46 |
47 | Revision 1.37 2008/04/07 23:06:39 bruno
48 | add the rocks version of openmpi and add some basic MPI tests
49 |
50 | Revision 1.36 2008/03/03 18:49:13 bruno
51 | added mpich2
52 |
53 | Revision 1.35 2007/06/06 23:17:02 bruno
54 | still install LAM, just don't configure it -- it confuses openmpi
55 |
56 | Revision 1.34 2007/06/06 20:42:06 bruno
57 | add all the openmpi packages
58 |
59 | Revision 1.33 2006/12/05 05:23:43 bruno
60 | yet another csh fix
61 |
62 | Revision 1.32 2006/09/13 18:32:14 anoop
63 | Minor changes to csh profiles
64 |
65 | Revision 1.31 2006/08/08 01:05:10 phil
66 | Properly handle cases when LD_LIBRARY_PATH starts out empty.
67 |
68 | Revision 1.30 2006/07/20 15:54:49 anoop
69 | *** empty log message ***
70 |
71 | Revision 1.29 2006/07/12 20:34:26 anoop
72 | Added openmpi support in the nodes file
73 |
74 | Revision 1.28 2006/05/19 09:27:08 phil
75 | put /opt/lam/gnu/lib into the LD_LIBRARY_PATH
76 |
77 | Revision 1.27 2006/03/17 14:49:34 bruno
78 | include man path to LAM -- thanks to Kevin Higgins for the bug report.
79 |
80 | Revision 1.26 2005/11/24 19:13:18 bruno
81 | make sure lam-mpi programs can find their shared-object libraries
82 |
83 | Revision 1.25 2005/10/19 20:24:53 bruno
84 | don't run the default cleanipcs after the end of every mpirun program
85 |
86 | Revision 1.24 2005/08/11 04:03:16 bruno
87 | sh and csh lines were swapped
88 |
89 | Revision 1.23 2005/08/09 17:52:26 mjk
90 | nuke mpd
91 |
92 | Revision 1.22 2005/07/14 05:39:17 nadya
93 | Add path to lam binaries. Needed for programs that run with lam mpi.
94 |
95 | Revision 1.21 2005/04/12 01:55:00 fds
96 | This has been renamed
97 |
98 | Revision 1.20 2005/03/14 15:05:22 bruno
99 | set the LAMRSH environment variable -- addresses bug 121.
100 |
101 | Revision 1.19 2005/02/17 00:29:45 bruno
102 | mpich is now parameterized for both ethernet and mpd
103 |
104 | Revision 1.18 2005/02/16 00:40:04 mjk
105 | graph cleanup
106 |
107 | Revision 1.17 2005/02/01 23:37:10 mjk
108 | remove roll attrs
109 |
110 | Revision 1.16 2004/12/22 03:02:40 bruno
111 | mpich-myrinet moved to the myrinet roll
112 |
113 | Revision 1.15 2004/09/10 16:53:04 najib
114 | Added lam mpi.
115 |
116 | Revision 1.14 2004/07/08 17:28:42 fds
117 | Check this bruno: Fix mpirun.args to stop Tron Saue's -nolocal bug from Feb-2004
118 |
119 | Revision 1.13 2004/03/04 00:02:59 bruno
120 | mpi cleanup
121 |
122 | Revision 1.12 2004/02/03 00:57:25 mjk
123 | decolorize / derollize
124 |
125 | Revision 1.11 2004/01/30 00:22:54 mjk
126 | color hpc green
127 |
128 | Revision 1.10 2003/12/18 22:09:24 bruno
129 | fixed man page for mpi
130 |
131 | Revision 1.9 2003/12/11 00:32:29 fds
132 | Include mpich2 in an experimental capacity.
133 |
134 | Revision 1.8 2003/11/03 22:00:09 bruno
135 | made man path consistent with other man paths
136 |
137 | Revision 1.7 2003/10/23 17:30:48 fds
138 | Removed non-ascii character.
139 |
140 | Revision 1.6 2003/10/23 00:35:39 bruno
141 | fixed the man path -- thanks to Gotz Waschk
142 |
143 | Revision 1.5 2003/07/21 20:03:41 fds
144 | Simple file append structure, with vars= attr
145 | where needed
146 |
147 | Revision 1.4 2003/07/17 15:45:29 bruno
148 | fixed the 'file' tag in comments section bug
149 |
150 | Revision 1.3 2003/07/16 21:32:33 fds
151 | Using new 'file mode=append' structure.
152 |
153 | Revision 1.2 2003/07/16 18:52:45 bruno
154 | changes all file creation code to use 'file' tag
155 |
156 | Revision 1.1 2003/07/07 20:47:51 bruno
157 | initial release
158 |
159 | Revision 1.6 2003/06/02 23:06:37 fds
160 | Moving man path manipulations into the kickstart post section.
161 |
162 | Revision 1.5 2003/05/28 18:17:53 fds
163 | Added support for MPD
164 |
165 | Revision 1.4 2002/10/28 19:51:13 mjk
166 | remove mpi-lauch
167 |
168 | Revision 1.3 2002/10/09 23:16:27 bruno
169 | fixup of package names to match our new source tree
170 |
171 | Revision 1.2 2002/10/02 20:38:55 bruno
172 | nuked patron/usher.
173 | made sure mpi-launch is installed.
174 |
175 | Revision 1.1 2001/09/05 00:27:17 mjk
176 | main and packages section is correct for compute nodes
177 |
178 |
179 |
180 | mpich3-ethernet-gnu
181 | rocks-openmpi
182 | openmpi
183 | openmpi-libs
184 | openmpi-devel
185 | mpi-tests
186 |
187 |
188 |
189 |
190 | MANPATH /opt/openmpi/share/man
191 | MANPATH /opt/mpich3/gnu/man
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 | cp -f /opt/openmpi/share/mpi-selector/rocks-openmpi* \
200 | /var/lib/mpi-selector/data
201 |
202 |
203 |
204 |
205 |
--------------------------------------------------------------------------------
/nodes/pvm.xml:
--------------------------------------------------------------------------------
1 |
2 |
3 |
4 |
5 |
6 |
7 | PVM
8 |
9 |
10 |
11 |
12 | $Log: pvm.xml,v $
13 | Revision 1.10 2007/06/07 22:02:30 phil
14 | just install packages
15 |
16 | Revision 1.9 2005/09/02 00:12:08 bruno
17 | better PVM configuration (thanks to Jose Luis Guisado)
18 |
19 | Revision 1.8 2005/02/17 01:53:58 bruno
20 | moved pvm source code into the hpc roll
21 |
22 | Revision 1.7 2005/02/16 00:40:04 mjk
23 | graph cleanup
24 |
25 | Revision 1.6 2005/02/01 23:37:10 mjk
26 | remove roll attrs
27 |
28 | Revision 1.5 2004/02/03 00:57:25 mjk
29 | decolorize / derollize
30 |
31 | Revision 1.4 2004/01/30 00:22:54 mjk
32 | color hpc green
33 |
34 | Revision 1.3 2003/10/20 22:02:33 fds
35 | For bruno
36 |
37 | Revision 1.2 2003/07/16 18:52:45 bruno
38 | changes all file creation code to use 'file' tag
39 |
40 | Revision 1.1 2003/07/07 20:47:51 bruno
41 | initial release
42 |
43 | Revision 1.3 2002/10/09 20:27:24 bruno
44 | updated 'contrib' package names
45 |
46 | Revision 1.2 2002/07/27 00:20:57 bruno
47 | included changes from craig hagen at cray
48 |
49 | Revision 1.1 2001/10/05 18:59:49 mjk
50 | *** empty log message ***
51 |
52 |
53 |
54 | pvm
55 | pvm-gui
56 | rocks-pvm
57 |
58 |
59 |
60 |
--------------------------------------------------------------------------------
/src/Makefile:
--------------------------------------------------------------------------------
1 | # $Id: Makefile,v 1.24 2012/11/27 00:49:00 phil Exp $
2 | #
3 | # @Copyright@
4 | #
5 | # Rocks(r)
6 | # www.rocksclusters.org
7 | # version 6.2 (SideWinder)
8 | # version 7.0 (Manzanita)
9 | #
10 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
11 | # All rights reserved.
12 | #
13 | # Redistribution and use in source and binary forms, with or without
14 | # modification, are permitted provided that the following conditions are
15 | # met:
16 | #
17 | # 1. Redistributions of source code must retain the above copyright
18 | # notice, this list of conditions and the following disclaimer.
19 | #
20 | # 2. Redistributions in binary form must reproduce the above copyright
21 | # notice unmodified and in its entirety, this list of conditions and the
22 | # following disclaimer in the documentation and/or other materials provided
23 | # with the distribution.
24 | #
25 | # 3. All advertising and press materials, printed or electronic, mentioning
26 | # features or use of this software must display the following acknowledgement:
27 | #
28 | # "This product includes software developed by the Rocks(r)
29 | # Cluster Group at the San Diego Supercomputer Center at the
30 | # University of California, San Diego and its contributors."
31 | #
32 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
33 | # neither the name or logo of this software nor the names of its
34 | # authors may be used to endorse or promote products derived from this
35 | # software without specific prior written permission. The name of the
36 | # software includes the following terms, and any derivatives thereof:
37 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
38 | # the associated name, interested parties should contact Technology
39 | # Transfer & Intellectual Property Services, University of California,
40 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
41 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
42 | #
43 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
44 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
45 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
46 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
47 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
48 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
49 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
50 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
51 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
52 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
53 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
54 | #
55 | # @Copyright@
56 | #
57 | # $Log: Makefile,v $
58 | # Revision 1.24 2012/11/27 00:49:00 phil
59 | # Copyright Storm for Emerald Boa
60 | #
61 | # Revision 1.23 2012/05/06 05:49:09 phil
62 | # Copyright Storm for Mamba
63 | #
64 | # Revision 1.22 2011/07/23 02:31:05 phil
65 | # Viper Copyright
66 | #
67 | # Revision 1.21 2010/09/07 23:53:20 bruno
68 | # star power for gb
69 | #
70 | # Revision 1.20 2009/05/01 19:07:18 mjk
71 | # chimi con queso
72 | #
73 | # Revision 1.19 2008/10/18 00:56:09 mjk
74 | # copyright 5.1
75 | #
76 | # Revision 1.18 2008/10/15 20:13:04 mjk
77 | # - more changes to build outside of the tree
78 | # - removed some old fds-only targets
79 | #
80 | # Revision 1.17 2008/05/21 17:46:55 anoop
81 | # Merginig code from mercurial.
82 | # This change makes the HPC roll more solaris friendly
83 | #
84 | # Revision 1.16 2008/03/06 23:41:53 mjk
85 | # copyright storm on
86 | #
87 | # Revision 1.15 2008/03/03 18:21:30 bruno
88 | # no more lam
89 | #
90 | # Revision 1.14 2007/12/03 22:34:48 bruno
91 | # don't build lam
92 | #
93 | # Revision 1.13 2007/08/14 20:28:40 anoop
94 | # Makefiles fitted so that compilation occurs without errors
95 | # on Solaris
96 | #
97 | # Revision 1.12 2007/06/23 04:03:38 mjk
98 | # mars hill copyright
99 | #
100 | # Revision 1.11 2006/12/05 14:50:55 bruno
101 | # added 'pkg'
102 | #
103 | # Revision 1.10 2006/09/11 22:48:46 mjk
104 | # monkey face copyright
105 | #
106 | # Revision 1.9 2006/08/10 00:10:51 mjk
107 | # 4.2 copyright
108 | #
109 | # Revision 1.8 2005/10/12 18:09:40 mjk
110 | # final copyright for 4.1
111 | #
112 | # Revision 1.7 2005/09/16 01:03:17 mjk
113 | # updated copyright
114 | #
115 | # Revision 1.6 2005/06/16 00:26:37 bruno
116 | # make sure atlas is built everytime.
117 | #
118 | # Revision 1.5 2005/05/24 21:22:42 mjk
119 | # update copyright, release is not any closer
120 | #
121 | # Revision 1.4 2005/03/12 00:01:58 bruno
122 | # minor checkin
123 | #
124 | # Revision 1.3 2005/03/08 00:59:09 fds
125 | # Works with empty src directories.
126 | #
127 | # Revision 1.2 2004/03/25 03:16:09 bruno
128 | # touch 'em all!
129 | #
130 | # update version numbers to 3.2.0 and update copyrights
131 | #
132 | # Revision 1.1 2004/02/09 06:10:05 bruno
133 | # new version of mpich
134 | #
135 | # Revision 1.2 2004/01/09 19:55:36 bruno
136 | # added mpd to intel roll
137 | #
138 | # restructured the way in which mpich is built for the various packages
139 | # in order to leverage code reuse
140 | #
141 | # Revision 1.1 2003/12/17 23:17:56 bruno
142 | # new intel rpms (version 8 of the compiler) and config
143 | #
144 | # Revision 1.2 2003/08/27 23:10:55 mjk
145 | # - copyright update
146 | # - rocks-dist uses getArch() fix the i686 distro bug
147 | # - ganglia-python spec file fixes (bad service start code)
148 | # - found some 80col issues while reading code
149 | # - WAN ks support starting
150 | #
151 | # Revision 1.1 2003/07/30 22:24:25 mjk
152 | # *** empty log message ***
153 | #
154 |
155 | -include $(shell $(ROCKSROOT)/bin/os).mk
156 |
157 | default: rpm
158 |
159 | copyright rpm pkg clean::
160 | for i in $(SRCDIRS) ; do \
161 | if [ -f $$i/Makefile ]; then \
162 | (cd $$i; $(MAKE) $@) ; \
163 | fi ; \
164 | done
165 |
166 |
--------------------------------------------------------------------------------
/src/RPMS/Makefile:
--------------------------------------------------------------------------------
1 | # --------------------------------------------------- -*- Makefile -*- --
2 | # $Id: Makefile,v 1.18 2012/11/27 00:49:00 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.18 2012/11/27 00:49:00 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.17 2012/05/08 00:00:58 phil
63 | # Copy PVM RPMs for 6
64 | #
65 | # Revision 1.16 2012/05/08 00:00:32 phil
66 | # Add the PVM RPMS for 6
67 | #
68 | #
69 |
70 | REDHAT.ROOT = $(PWD)/../../
71 | ARCH = $(shell $(PWD)/../../_arch)
72 | RELEASE = $(shell lsb_release -rs | cut -f 1 -d .)
73 | # RELEASE = 5
74 |
75 | PVM = pvm-*.el$(RELEASE).
76 | ifeq ($(ARCH),i386)
77 | PATTERN = i[3456]86.rpm
78 | else
79 | PATTERN = $(ARCH).rpm
80 | endif
81 |
82 | pkg rpm default:
83 | if [ ! -d $(REDHAT.ROOT)/RPMS/$(ARCH) ]; then \
84 | mkdir -p $(REDHAT.ROOT)/RPMS/$(ARCH); \
85 | fi
86 | for rpm in `find . -name '$(PVM)$(PATTERN)'`; do \
87 | echo "Copying $$rpm"; \
88 | /bin/cp $$rpm $(REDHAT.ROOT)/RPMS/$(ARCH); \
89 | done
90 |
--------------------------------------------------------------------------------
/src/iozone/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.25 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.25 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.24 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.23 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.22 2010/11/28 00:40:34 anoop
69 | # Solaris 64-bit support for iozone
70 | #
71 | # Revision 1.21 2010/09/07 23:53:20 bruno
72 | # star power for gb
73 | #
74 | # Revision 1.20 2009/11/25 18:51:02 anoop
75 | # Upgraded iozone
76 | #
77 | # Revision 1.19 2009/10/07 17:10:22 bruno
78 | # workaround for a bad checkin
79 | #
80 | # Revision 1.18 2009/10/01 21:07:56 bruno
81 | # refresh for 5.3
82 | #
83 | # Revision 1.17 2009/05/01 19:07:18 mjk
84 | # chimi con queso
85 | #
86 | # Revision 1.16 2008/10/18 00:56:09 mjk
87 | # copyright 5.1
88 | #
89 | # Revision 1.15 2008/10/15 20:13:04 mjk
90 | # - more changes to build outside of the tree
91 | # - removed some old fds-only targets
92 | #
93 | # Revision 1.14 2008/05/21 17:46:55 anoop
94 | # Merginig code from mercurial.
95 | # This change makes the HPC roll more solaris friendly
96 | #
97 | # Revision 1.13 2008/03/06 23:41:53 mjk
98 | # copyright storm on
99 | #
100 | # Revision 1.12 2007/06/23 04:03:39 mjk
101 | # mars hill copyright
102 | #
103 | # Revision 1.11 2006/09/11 22:48:51 mjk
104 | # monkey face copyright
105 | #
106 | # Revision 1.10 2006/08/10 00:10:56 mjk
107 | # 4.2 copyright
108 | #
109 | # Revision 1.9 2006/07/01 16:56:46 bruno
110 | # refreshed iozone and converted the build procedure from SRPM-based to
111 | # tarball-based.
112 | #
113 | #
114 |
115 | REDHAT.ROOT = $(CURDIR)/../../
116 |
117 | -include $(ROCKSROOT)/etc/Rules.mk
118 | include Rules.mk
119 |
120 | BINARIES = iozone fileop Generate_Graphs gengnuplot.sh gnu3d.dem
121 | DOCS = IOzone_msword_98.pdf Run_rules.doc IOzone_msword_98.doc \
122 | Iozone_ps.gz
123 |
124 |
125 | build:
126 | $(TAR) xf $(NAME)$(IOZONE_VERSION).tar
127 | -(cd patch-files && \
128 | find $(NAME)$(IOZONE_VERSION) -type f | \
129 | grep -v CVS | cpio -pudv ../; \
130 | )
131 | ( \
132 | cd $(NAME)$(IOZONE_VERSION)/src/current; \
133 | $(MAKE) $(TARGET); \
134 | )
135 |
136 | install::
137 | mkdir -p $(ROOT)/$(PKGROOT)/bin
138 | ( \
139 | cd $(NAME)$(IOZONE_VERSION)/src/current; \
140 | cp $(BINARIES) $(ROOT)/$(PKGROOT)/bin; \
141 | )
142 | mkdir -p $(ROOT)/$(PKGROOT)/docs
143 | ( \
144 | cd $(NAME)$(IOZONE_VERSION)/docs; \
145 | cp $(DOCS) $(ROOT)/$(PKGROOT)/docs; \
146 | )
147 | ( \
148 | cd $(NAME)$(IOZONE_VERSION)/src/current; \
149 | cp Gnuplot.txt $(ROOT)/$(PKGROOT)/docs; \
150 | )
151 |
152 |
153 | clean::
154 | rm -rf $(NAME)$(IOZONE_VERSION)
155 | rm -f $(NAME).spec.in
156 |
157 |
--------------------------------------------------------------------------------
/src/iozone/i386.mk:
--------------------------------------------------------------------------------
1 | TARGET = linux
2 |
--------------------------------------------------------------------------------
/src/iozone/sunos.mk:
--------------------------------------------------------------------------------
1 | TARGET = Solaris10cc-64
2 |
--------------------------------------------------------------------------------
/src/iozone/version.mk:
--------------------------------------------------------------------------------
1 | NAME = iozone
2 | VERSION = 3.465
3 | RELEASE = 0
4 | PKGROOT = /opt/iozone
5 |
6 | IOZONE_VERSION = 3_465
7 | RPM.FILES = $(PKGROOT)
8 |
--------------------------------------------------------------------------------
/src/iozone/x86_64.mk:
--------------------------------------------------------------------------------
1 | TARGET = linux-AMD64
2 |
--------------------------------------------------------------------------------
/src/iperf/Makefile:
--------------------------------------------------------------------------------
1 | # --------------------------------------------------- -*- Makefile -*- --
2 | # $Id: Makefile,v 1.21 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.21 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.20 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.19 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.18 2010/11/28 00:42:10 anoop
69 | # Solaris support for iperf-2.0.5
70 | #
71 | # Revision 1.17 2010/09/14 17:10:00 bruno
72 | # don't patch if the patch files don't exist for this version/os
73 | #
74 | # Revision 1.16 2010/09/07 23:53:20 bruno
75 | # star power for gb
76 | #
77 | # Revision 1.15 2009/11/25 23:20:51 anoop
78 | # Mods to support sunos patching for iperf
79 | #
80 | # Revision 1.14 2009/05/01 19:07:18 mjk
81 | # chimi con queso
82 | #
83 | # Revision 1.13 2008/10/18 00:56:10 mjk
84 | # copyright 5.1
85 | #
86 | # Revision 1.12 2008/10/15 20:13:04 mjk
87 | # - more changes to build outside of the tree
88 | # - removed some old fds-only targets
89 | #
90 | # Revision 1.11 2008/05/21 17:46:55 anoop
91 | # Merginig code from mercurial.
92 | # This change makes the HPC roll more solaris friendly
93 | #
94 | # Revision 1.10 2008/03/06 23:41:53 mjk
95 | # copyright storm on
96 | #
97 | # Revision 1.9 2008/02/28 17:32:55 bruno
98 | # nuked the spec file for iperf
99 | #
100 | # Revision 1.8 2007/06/23 04:03:39 mjk
101 | # mars hill copyright
102 | #
103 | # Revision 1.7 2006/09/11 22:48:52 mjk
104 | # monkey face copyright
105 | #
106 | # Revision 1.6 2006/08/10 00:10:57 mjk
107 | # 4.2 copyright
108 | #
109 | # Revision 1.5 2005/10/12 18:09:46 mjk
110 | # final copyright for 4.1
111 | #
112 | # Revision 1.4 2005/09/16 01:03:24 mjk
113 | # updated copyright
114 | #
115 | # Revision 1.3 2005/05/24 21:22:49 mjk
116 | # update copyright, release is not any closer
117 | #
118 | # Revision 1.2 2005/03/14 21:31:37 fds
119 | # Fixed subtle name collision during build process.
120 | #
121 | # Revision 1.1 2005/02/17 01:32:02 bruno
122 | # moved iperf source into the hpc roll
123 | #
124 | # Revision 1.3 2003/05/29 02:37:13 bruno
125 | # added iperf 1.7
126 | #
127 | # Revision 1.2 2002/10/07 04:34:46 mjk
128 | # builds under new structure
129 | #
130 | #
131 |
132 | REDHAT.ROOT = $(CURDIR)/../../
133 |
134 | -include $(ROCKSROOT)/etc/Rules.mk
135 | include Rules.mk
136 |
137 | prep:
138 | gunzip -c iperf-$(VERSION).tar.gz | $(TAR) -xf -
139 | if [ -d patch-files/iperf-$(VERSION)/$(OS) ] ; then \
140 | ( \
141 | cd patch-files/iperf-$(VERSION)/$(OS); \
142 | find . -type f | grep -v CVS | \
143 | cpio -pudv ../../../iperf-$(VERSION); \
144 | ); \
145 | fi
146 |
147 |
148 | build: prep
149 | ( \
150 | cd iperf-$(VERSION) ; \
151 | ./configure --prefix=$(PKGROOT) $(OSFLAGS);\
152 | $(MAKE) ; \
153 | )
154 | install::
155 | mkdir -p $(ROOT)/$(PKGROOT)
156 | ( \
157 | cd iperf-$(VERSION) ; \
158 | $(MAKE) prefix=$(ROOT)/$(PKGROOT) install ; \
159 | )
160 |
161 |
162 | clean::
163 | rm -rf iperf-$(VERSION)
164 |
--------------------------------------------------------------------------------
/src/iperf/sunos.mk:
--------------------------------------------------------------------------------
1 | OSFLAGS=CXXFLAGS=-lrt
2 |
--------------------------------------------------------------------------------
/src/iperf/version.mk:
--------------------------------------------------------------------------------
1 | NAME = opt-iperf
2 | VERSION = 2.0.5
3 | RELEASE = 1
4 | PKGROOT = /opt/iperf
5 | COPYRIGHT = The Board of Trustees of the University of Illinois
6 | TARNAME = iperf-$(VERSION).tar.gz
7 | RPM.FILES = $(PKGROOT)
8 |
--------------------------------------------------------------------------------
/src/iperf3/Makefile:
--------------------------------------------------------------------------------
1 | # --------------------------------------------------- -*- Makefile -*- --
2 | # $Id: Makefile,v 1.21 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.21 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.20 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.19 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.18 2010/11/28 00:42:10 anoop
69 | # Solaris support for iperf-2.0.5
70 | #
71 | # Revision 1.17 2010/09/14 17:10:00 bruno
72 | # don't patch if the patch files don't exist for this version/os
73 | #
74 | # Revision 1.16 2010/09/07 23:53:20 bruno
75 | # star power for gb
76 | #
77 | # Revision 1.15 2009/11/25 23:20:51 anoop
78 | # Mods to support sunos patching for iperf
79 | #
80 | # Revision 1.14 2009/05/01 19:07:18 mjk
81 | # chimi con queso
82 | #
83 | # Revision 1.13 2008/10/18 00:56:10 mjk
84 | # copyright 5.1
85 | #
86 | # Revision 1.12 2008/10/15 20:13:04 mjk
87 | # - more changes to build outside of the tree
88 | # - removed some old fds-only targets
89 | #
90 | # Revision 1.11 2008/05/21 17:46:55 anoop
91 | # Merginig code from mercurial.
92 | # This change makes the HPC roll more solaris friendly
93 | #
94 | # Revision 1.10 2008/03/06 23:41:53 mjk
95 | # copyright storm on
96 | #
97 | # Revision 1.9 2008/02/28 17:32:55 bruno
98 | # nuked the spec file for iperf
99 | #
100 | # Revision 1.8 2007/06/23 04:03:39 mjk
101 | # mars hill copyright
102 | #
103 | # Revision 1.7 2006/09/11 22:48:52 mjk
104 | # monkey face copyright
105 | #
106 | # Revision 1.6 2006/08/10 00:10:57 mjk
107 | # 4.2 copyright
108 | #
109 | # Revision 1.5 2005/10/12 18:09:46 mjk
110 | # final copyright for 4.1
111 | #
112 | # Revision 1.4 2005/09/16 01:03:24 mjk
113 | # updated copyright
114 | #
115 | # Revision 1.3 2005/05/24 21:22:49 mjk
116 | # update copyright, release is not any closer
117 | #
118 | # Revision 1.2 2005/03/14 21:31:37 fds
119 | # Fixed subtle name collision during build process.
120 | #
121 | # Revision 1.1 2005/02/17 01:32:02 bruno
122 | # moved iperf source into the hpc roll
123 | #
124 | # Revision 1.3 2003/05/29 02:37:13 bruno
125 | # added iperf 1.7
126 | #
127 | # Revision 1.2 2002/10/07 04:34:46 mjk
128 | # builds under new structure
129 | #
130 | #
131 |
132 | REDHAT.ROOT = $(CURDIR)/../../
133 |
134 | -include $(ROCKSROOT)/etc/Rules.mk
135 | include Rules.mk
136 |
137 | prep:
138 | gunzip -c iperf-$(VERSION).tar.gz | $(TAR) -xf -
139 | if [ -d patch-files/iperf-$(VERSION)/$(OS) ] ; then \
140 | ( \
141 | cd patch-files/iperf-$(VERSION)/$(OS); \
142 | find . -type f | grep -v CVS | \
143 | cpio -pudv ../../../iperf-$(VERSION); \
144 | ); \
145 | fi
146 |
147 |
148 | build: prep
149 | ( \
150 | cd iperf-$(VERSION) ; \
151 | ./configure --prefix=$(PKGROOT) $(OSFLAGS);\
152 | $(MAKE) ; \
153 | )
154 | install::
155 | mkdir -p $(ROOT)/$(PKGROOT)
156 | ( \
157 | cd iperf-$(VERSION) ; \
158 | $(MAKE) prefix=$(ROOT)/$(PKGROOT) install ; \
159 | )
160 |
161 |
162 | clean::
163 | rm -rf iperf-$(VERSION)
164 |
--------------------------------------------------------------------------------
/src/iperf3/version.mk:
--------------------------------------------------------------------------------
1 | NAME = opt-iperf3
2 | VERSION = 3.3
3 | RELEASE = 1
4 | PKGROOT = /opt/iperf3
5 | COPYRIGHT = The Board of Trustees of the University of Illinois
6 | TARNAME = iperf-$(VERSION).tar.gz
7 | RPM.FILES = $(PKGROOT)
8 |
--------------------------------------------------------------------------------
/src/linux.mk:
--------------------------------------------------------------------------------
1 | SRCDIRS = `find * -prune -type d \
2 | ! -name CVS \
3 | ! -name . \
4 | ! -name PKGS`
5 |
--------------------------------------------------------------------------------
/src/mpi-tests/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.9 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.9 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.8 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.7 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.6 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.5 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.4 2008/10/18 00:56:10 mjk
75 | # copyright 5.1
76 | #
77 | # Revision 1.3 2008/10/15 20:13:04 mjk
78 | # - more changes to build outside of the tree
79 | # - removed some old fds-only targets
80 | #
81 | # Revision 1.2 2008/05/21 17:46:55 anoop
82 | # Merginig code from mercurial.
83 | # This change makes the HPC roll more solaris friendly
84 | #
85 | # Revision 1.1 2008/04/07 23:01:59 bruno
86 | # add some simple MPI tests to help the user test out their cluster
87 | #
88 | #
89 |
90 | REDHAT.ROOT = $(CURDIR)/../../
91 | -include $(ROCKSROOT)/etc/Rules.mk
92 | include Rules.mk
93 |
94 |
95 | build:
96 | ( \
97 | source /etc/profile.d/modules.sh; \
98 | module load $(MODULE); \
99 | $(MPICC) -o mpi-verify mpi-verify.c -lm; \
100 | $(MPICC) -o mpi-ring mpi-ring.c -lm; \
101 | module unload $(MODULE); \
102 | )
103 |
104 | install::
105 | mkdir -p $(ROOT)/$(PKGROOT)/bin
106 | cp mpi-verify $(ROOT)/$(PKGROOT)/bin
107 | cp mpi-ring $(ROOT)/$(PKGROOT)/bin
108 | mkdir -p $(ROOT)/$(PKGROOT)/src
109 | cp *.c $(ROOT)/$(PKGROOT)/src
110 | cp Makefile.tests $(ROOT)/$(PKGROOT)/src/Makefile
111 |
112 |
113 | clean::
114 | rm -f $(NAME).spec.in
115 | rm -f mpi-ring mpi-verify
116 |
117 |
--------------------------------------------------------------------------------
/src/mpi-tests/Makefile.tests:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile.tests,v 1.7 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile.tests,v $
59 | # Revision 1.7 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.6 2012/05/06 05:49:09 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.5 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.4 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.3 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.2 2008/10/18 00:56:10 mjk
75 | # copyright 5.1
76 | #
77 | # Revision 1.1 2008/04/07 23:01:59 bruno
78 | # add some simple MPI tests to help the user test out their cluster
79 | #
80 | #
81 |
82 | build:
83 | mpicc -o mpi-verify mpi-verify.c -lm
84 | mpicc -o mpi-ring mpi-ring.c -lm
85 |
86 |
--------------------------------------------------------------------------------
/src/mpi-tests/mpi-ring.c:
--------------------------------------------------------------------------------
1 | /*
2 | # $Id: mpi-ring.c,v 1.9 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: mpi-ring.c,v $
59 | # Revision 1.9 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.8 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.7 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.6 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.5 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.4 2009/02/06 00:30:54 anoop
75 | # Oh god!! I'm a dumbass. Even the presence of
76 | # comment chars inside a comment can terminate
77 | # the comment. Aaaarrrgh!!!
78 | #
79 | # Revision 1.3 2009/02/06 00:28:05 anoop
80 | #
81 | # Revision 1.2 2009/01/26 22:26:50 mjk
82 | # added missing copyright
83 | #
84 | */
85 |
86 | #include
87 | #include
88 | #include "mpi.h"
89 |
90 |
91 | int
92 | main(int argc, char *argv[])
93 | {
94 | MPI_Request sendreq;
95 | MPI_Request recvreq;
96 | MPI_Status status;
97 | int numprocs;
98 | int myid;
99 | int namelen;
100 | int left, right;
101 | int bufsize;
102 | char processor_name[MPI_MAX_PROCESSOR_NAME];
103 | char *sendbuf, *recvbuf;
104 |
105 | MPI_Init(&argc, &argv);
106 | MPI_Comm_size(MPI_COMM_WORLD, &numprocs);
107 | MPI_Comm_rank(MPI_COMM_WORLD, &myid);
108 | MPI_Get_processor_name(processor_name, &namelen);
109 |
110 | fprintf(stderr,"Process %d on %s\n", myid, processor_name);
111 |
112 | right = (myid + 1) % numprocs;
113 | if (myid == 0) {
114 | left = numprocs - 1;
115 | } else {
116 | left = (myid - 1) % numprocs;
117 | }
118 |
119 | if (argc == 2) {
120 | bufsize = atoi(argv[1]);
121 | } else {
122 | bufsize = 1024 * 1024;
123 | }
124 |
125 | if ((sendbuf = (char *)malloc(bufsize)) == NULL) {
126 | fprintf(stderr,"Process %d on %s:malloc failed\n",
127 | myid, processor_name);
128 |
129 | MPI_Finalize();
130 | exit(-1);
131 | }
132 |
133 | if ((recvbuf = (char *)malloc(bufsize)) == NULL) {
134 | fprintf(stderr,"Process %d on %s:malloc failed\n",
135 | myid, processor_name);
136 |
137 | MPI_Finalize();
138 | exit(-1);
139 | }
140 |
141 | if (MPI_Isend(sendbuf, bufsize, MPI_CHAR, right, 1,
142 | MPI_COMM_WORLD, &sendreq) != MPI_SUCCESS) {
143 |
144 | fprintf(stderr,"Process %d on %s:MPI_Isend failed\n",
145 | myid, processor_name);
146 |
147 | MPI_Finalize();
148 | exit(-1);
149 | }
150 |
151 | if (MPI_Irecv(recvbuf, bufsize, MPI_CHAR, left, 1,
152 | MPI_COMM_WORLD, &recvreq) != MPI_SUCCESS) {
153 |
154 | fprintf(stderr,"Process %d on %s:MPI_Irecv failed\n",
155 | myid, processor_name);
156 |
157 | MPI_Finalize();
158 | exit(-1);
159 | }
160 |
161 | if (MPI_Wait(&sendreq, &status) != MPI_SUCCESS) {
162 | fprintf(stderr,"Process %d on %s:MPI_Wait failed:sendreq\n",
163 | myid, processor_name);
164 |
165 | MPI_Finalize();
166 | exit(-1);
167 | }
168 |
169 | fprintf(stderr,
170 | "Process %d on %s:successfully sent (%d) bytes to id (%d)\n",
171 | myid, processor_name, bufsize, right);
172 |
173 | if (MPI_Wait(&recvreq, &status) != MPI_SUCCESS) {
174 | fprintf(stderr,"Process %d on %s:MPI_Wait failed:sendreq\n",
175 | myid, processor_name);
176 |
177 | MPI_Finalize();
178 | exit(-1);
179 | }
180 |
181 | fprintf(stderr,
182 | "Process %d on %s:successfully received (%d) bytes from id (%d)\n",
183 | myid, processor_name, bufsize, left);
184 |
185 | MPI_Barrier(MPI_COMM_WORLD);
186 |
187 | MPI_Finalize();
188 | }
189 |
--------------------------------------------------------------------------------
/src/mpi-tests/mpi-verify.c:
--------------------------------------------------------------------------------
1 | /*
2 | # $Id: mpi-verify.c,v 1.9 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: mpi-verify.c,v $
59 | # Revision 1.9 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.8 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.7 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.6 2010/09/07 23:53:20 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.5 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.4 2009/02/06 00:30:54 anoop
75 | # Oh god!! I'm a dumbass. Even the presence of
76 | # comment chars inside a comment can terminate
77 | # the comment. Aaaarrrgh!!!
78 | #
79 | # Revision 1.3 2009/02/06 00:28:05 anoop
80 | #
81 | # Revision 1.2 2009/01/26 22:26:50 mjk
82 | # added missing copyright
83 | #
84 | */
85 |
86 | #include
87 | #include "mpi.h"
88 |
89 | int
90 | main(int argc, char *argv[])
91 | {
92 | int numprocs;
93 | int myid;
94 | int namelen;
95 | char processor_name[MPI_MAX_PROCESSOR_NAME];
96 |
97 | MPI_Init(&argc,&argv);
98 | MPI_Comm_size(MPI_COMM_WORLD,&numprocs);
99 | MPI_Comm_rank(MPI_COMM_WORLD,&myid);
100 | MPI_Get_processor_name(processor_name,&namelen);
101 |
102 | fprintf(stderr,"Process %d on %s\n", myid, processor_name);
103 |
104 | MPI_Barrier(MPI_COMM_WORLD);
105 |
106 | MPI_Finalize();
107 | }
108 |
--------------------------------------------------------------------------------
/src/mpi-tests/sunos.mk:
--------------------------------------------------------------------------------
1 | MPICC = $(MPIROOT)/bin/mpicc
2 |
--------------------------------------------------------------------------------
/src/mpi-tests/version.mk:
--------------------------------------------------------------------------------
1 | NAME = mpi-tests
2 | PKGROOT = /opt/mpi-tests
3 | RELEASE = 1
4 | MODULE = rocks-openmpi
5 | MPICC = mpicc
6 | RPM.FILES = $(PKGROOT)
7 |
--------------------------------------------------------------------------------
/src/mpich3/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.11 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.11 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.10 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.9 2012/04/27 05:00:59 phil
66 | # Update version of mpich2
67 | #
68 | # Revision 1.8 2011/07/23 02:31:05 phil
69 | # Viper Copyright
70 | #
71 | # Revision 1.7 2011/07/14 05:00:14 anoop
72 | # Upgrade makefile to use new options for compiling
73 | #
74 | # Revision 1.6 2010/09/07 23:53:20 bruno
75 | # star power for gb
76 | #
77 | # Revision 1.5 2009/05/01 19:07:18 mjk
78 | # chimi con queso
79 | #
80 | # Revision 1.4 2008/10/18 00:56:10 mjk
81 | # copyright 5.1
82 | #
83 | # Revision 1.3 2008/10/15 20:13:04 mjk
84 | # - more changes to build outside of the tree
85 | # - removed some old fds-only targets
86 | #
87 | # Revision 1.2 2008/03/06 23:41:54 mjk
88 | # copyright storm on
89 | #
90 | # Revision 1.1 2008/03/03 18:49:13 bruno
91 | # added mpich2
92 | #
93 | #
94 |
95 | REDHAT.ROOT = $(CURDIR)/../../
96 | -include $(ROCKSROOT)/etc/Rules.mk
97 | include Rules.mk
98 |
99 |
100 | build:
101 | tar xzf $(BASEDIR).tar.gz
102 | ( \
103 | cd $(BASEDIR) ; \
104 | FC=gfortran ./configure --prefix=$(PKGROOT) \
105 | --with-device="ch3:nemesis" \
106 | --enable-fast --enable-fortran \
107 | --enable-shared \
108 | --enable-sharedlibs=gcc \
109 | --enable-threads=runtime \
110 | --enable-romio \
111 | --enable-smpcoll ; \
112 | $(MAKE) ; \
113 | )
114 |
115 | install::
116 | mkdir -p $(ROOT)/$(PKGROOT)
117 | ( \
118 | cd $(BASEDIR) ; \
119 | $(MAKE) prefix=$(ROOT)/$(PKGROOT) install ; \
120 | )
121 | find $(ROOT) -type f -exec /bin/sed -i "s%$(ROOT)%%g" {} \;
122 |
123 | clean::
124 | rm -rf $(BASEDIR)
125 |
--------------------------------------------------------------------------------
/src/mpich3/version.mk:
--------------------------------------------------------------------------------
1 | NAME = mpich3-ethernet-gnu
2 | VERSION = 3.2
3 | RELEASE = 0
4 |
5 | BASEDIR = mpich-$(VERSION)
6 |
7 | PKGROOT = /opt/mpich3/gnu
8 | COPYRIGHT = University of Chicago
9 | RPM.FILES = $(PKGROOT)
10 |
--------------------------------------------------------------------------------
/src/openmpi/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.18 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | #
59 | # $Log: Makefile,v $
60 | # Revision 1.18 2012/11/27 00:49:01 phil
61 | # Copyright Storm for Emerald Boa
62 | #
63 | # Revision 1.17 2012/09/30 21:58:56 phil
64 | # Update openmpi to 1.6.2.
65 | # Create Modules for ethernet and IB
66 | # Add IB support - packages, openmpi configuration, udev rules
67 | #
68 | # Revision 1.16 2012/05/06 05:49:10 phil
69 | # Copyright Storm for Mamba
70 | #
71 | # Revision 1.15 2012/04/06 19:49:49 phil
72 | # environment modules file
73 | #
74 | # Revision 1.14 2011/10/07 18:52:00 anoop
75 | # Bug fix
76 | #
77 | # Revision 1.13 2011/07/23 02:31:05 phil
78 | # Viper Copyright
79 | #
80 | # Revision 1.12 2010/09/07 23:53:20 bruno
81 | # star power for gb
82 | #
83 | # Revision 1.11 2010/03/08 04:36:50 anoop
84 | # Upgraded OpenMPI to 1.4.1
85 | # Added mpi-selector capability
86 | #
87 | # Revision 1.10 2009/05/01 19:07:18 mjk
88 | # chimi con queso
89 | #
90 | # Revision 1.9 2008/10/18 00:56:10 mjk
91 | # copyright 5.1
92 | #
93 | # Revision 1.8 2008/10/15 20:13:04 mjk
94 | # - more changes to build outside of the tree
95 | # - removed some old fds-only targets
96 | #
97 | # Revision 1.7 2008/04/07 23:03:02 bruno
98 | # add openmpi back into HPC roll. the bio roll will use thie mpi environment
99 | # to for a couple of its apps.
100 | #
101 | #
102 |
103 | REDHAT.ROOT = $(CURDIR)/../../
104 |
105 | -include $(ROCKSROOT)/etc/Rules.mk
106 | include Rules.mk
107 |
108 | %: %.in
109 | $(SED) $(SEDSCRIPT) $^ > $@
110 |
111 | build:
112 | $(CAT-COMPRESS) openmpi-$(VERSION).$(TARBALL-EXTENSION) | $(TAR) -xf -
113 | ( \
114 | cd openmpi-$(VERSION) ; \
115 | ./configure --prefix=$(PKGROOT) \
116 | --with-verbs \
117 | --with-sge \
118 | --with-slurm \
119 | --enable-static ; \
120 | $(MAKE) all ; \
121 | )
122 |
123 | install::
124 | ( \
125 | cd openmpi-$(VERSION) ; \
126 | $(MAKE) prefix=$(ROOT)/$(PKGROOT) install ; \
127 | )
128 | ( find mpi-selector -type f | grep -v CVS | \
129 | cpio -pudv $(ROOT)/$(PKGROOT)/share/ )
130 |
131 | clean::
132 | rm -rf openmpi-$(VERSION)
133 | rm -rf $(NAME).spec.in
134 |
135 |
136 |
--------------------------------------------------------------------------------
/src/openmpi/mpi-selector/rocks-openmpi-1.4.3.csh:
--------------------------------------------------------------------------------
1 | #!/bin/csh
2 | #
3 | # Adapted from the CentOS OpenMPI rpm for use with mpi-selector
4 |
5 | if ("" == "`echo $path | grep /opt/openmpi/bin`") then
6 | set path=(/opt/openmpi/bin $path)
7 | endif
8 |
9 | if ("1" == "$?LD_LIBRARY_PATH") then
10 | if ("$LD_LIBRARY_PATH" !~ */opt/openmpi/lib*) then
11 | setenv LD_LIBRARY_PATH /opt/openmpi/lib:$LD_LIBRARY_PATH
12 | endif
13 | else
14 | setenv LD_LIBRARY_PATH /opt/openmpi/lib
15 | endif
16 |
--------------------------------------------------------------------------------
/src/openmpi/mpi-selector/rocks-openmpi-1.4.3.sh:
--------------------------------------------------------------------------------
1 | #!/bin/bash
2 | #
3 | # Adapted from the CentOS OpenMPI rpm for use with mpi-selector
4 |
5 | if [ -z "`echo $PATH | grep /opt/openmpi/bin`" ]; then
6 | export PATH=/opt/openmpi/bin:$PATH
7 | fi
8 |
9 | if [ -z "`echo $LD_LIBRARY_PATH | grep /opt/openmpi/lib`" ]; then
10 | if [ -n "$LD_LIBRARY_PATH" ]; then
11 | export LD_LIBRARY_PATH=/opt/openmpi/lib:$LD_LIBRARY_PATH
12 | else
13 | export LD_LIBRARY_PATH=/opt/openmpi/lib
14 | fi
15 | fi
16 |
--------------------------------------------------------------------------------
/src/openmpi/version.mk:
--------------------------------------------------------------------------------
1 | NAME = rocks-openmpi
2 | VERSION = 2.1.1
3 | RELEASE = 2
4 | PKGROOT = /opt/openmpi
5 |
6 | TARBALL-EXTENSION = tar.gz
7 | #### if a bzip2 file
8 | ## TARBALL-EXTENSION = tar.bz2
9 |
10 | ifneq (,$(findstring bz2, $(TARBALL-EXTENSION)))
11 | CAT-COMPRESS = bzcat
12 | else
13 | CAT-COMPRESS = zcat
14 | endif
15 | RPM.FILES = $(PKGROOT)
16 |
--------------------------------------------------------------------------------
/src/pvm/Makefile:
--------------------------------------------------------------------------------
1 | # --------------------------------------------------- -*- Makefile -*- --
2 | # $Id: Makefile,v 1.12 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.12 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.11 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.10 2011/07/23 02:31:05 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.9 2010/09/07 23:53:21 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.8 2009/05/01 19:07:18 mjk
72 | # chimi con queso
73 | #
74 | # Revision 1.7 2008/10/18 00:56:10 mjk
75 | # copyright 5.1
76 | #
77 | # Revision 1.6 2008/10/15 20:13:04 mjk
78 | # - more changes to build outside of the tree
79 | # - removed some old fds-only targets
80 | #
81 | # Revision 1.5 2008/03/06 23:41:54 mjk
82 | # copyright storm on
83 | #
84 | # Revision 1.4 2007/06/23 04:03:39 mjk
85 | # mars hill copyright
86 | #
87 | # Revision 1.3 2007/06/07 23:08:25 phil
88 | # Added some add examples and a small readme
89 | #
90 | # Revision 1.2 2007/06/07 22:00:59 phil
91 | # Use the CentOS build of PVM
92 | #
93 |
94 | PROFILES = pvm.sh pvm.csh
95 | ROCKS-EXAMPLES = pvm3-examples.tar Readme.rocks
96 |
97 | PKGROOT = /usr/share/pvm3
98 |
99 | REDHAT.ROOT = $(PWD)/../../
100 | -include $(ROCKSROOT)/etc/Rules.mk
101 | include Rules.mk
102 | -include $(ROCKSROOT)/etc/python.mk
103 | include python.mk
104 |
105 | build:
106 |
107 | install::
108 | mkdir -p $(ROOT)/etc/profile.d
109 | mkdir -p $(ROOT)/$(PKGROOT)
110 | install -m755 $(PROFILES) $(ROOT)/etc/profile.d
111 | install -m644 $(ROCKS-EXAMPLES) $(ROOT)/$(PKGROOT)
112 |
113 | clean::
114 | rm -rf $(NAME)-$(VERSION)
115 |
--------------------------------------------------------------------------------
/src/pvm/Readme.rocks:
--------------------------------------------------------------------------------
1 |
2 | PVM version 3.4: Parallel Virtual Machine System
3 | University of Tennessee, Knoxville TN.
4 | Oak Ridge National Laboratory, Oak Ridge TN.
5 | Emory University, Atlanta GA.
6 | Authors: J. J. Dongarra, G. E. Fagg, G. A. Geist,
7 | J. A. Kohl, R. J. Manchek, P. Mucci,
8 | P. M. Papadopoulos, S. L. Scott, and V. S. Sunderam
9 | (C) 1997 All Rights Reserved
10 |
11 | NOTICE
12 |
13 | Permission to use, copy, modify, and distribute this software and
14 | its documentation for any purpose and without fee is hereby granted
15 | provided that the above copyright notice appear in all copies and
16 | that both the copyright notice and this permission notice appear in
17 | supporting documentation.
18 |
19 | Neither the Institutions (Emory University, Oak Ridge National
20 | Laboratory, and University of Tennessee) nor the Authors make any
21 | representations about the suitability of this software for any
22 | purpose. This software is provided ``as is'' without express or
23 | implied warranty.
24 |
25 | PVM version 3 was funded in part by the U.S. Department of Energy,
26 | the National Science Foundation and the State of Tennessee.
27 |
28 | ________________________________________________________________________
29 |
30 | PVM for Rocks Users
31 |
32 | FAQ
33 | 1. What version of PVM is used
34 | 2. What has Rocks added or changed from PVM
35 | 3. How do I compile examples;
36 |
37 |
38 | 1. What version of PVM is used?
39 | As of version 4.3 of Rocks: PVM 3.4.4 as supplied and compiled by RedHat/CentOS. Prior to version 4.3 of Rocks, a patched version of PVM was used that was for Beowulf clusters (called beolin). The default version is the standard workstation version of PVM. It will work within a single cluster and among nodes that have direct connectivity. It does not support using PVM to glue together two (or more) clusters with private-only interfaces.
40 |
41 | 2. What has Rocks added or changed from PVM?
42 | The basic is RPM is as-supplied by RedHat/CentOS. We have added profiles for Bourne shell and C-shell users. This Readme is added. We have tarred up the examples directory with a slightly modified Makefile.aimk. Files added are:
43 | /etc/profile.d/pvm.sh
44 | /etc/profile.d/pvm.csh
45 | /usr/share/pvm3/Readme.rocks
46 | /usr/share/pvm3/pvm3-examples.tar
47 |
48 | 3. How do I compile examples?
49 | The simplest thing to do is for a user in their home directory to do the following
50 | % cd $HOME
51 | % tar xf /usr/share/pvm3/pvm3-examples.tar
52 | % cd pvm3/examples
53 | % aimk timing timing_slave
54 |
55 | The last step will create PVM executables in $HOME/pvm3/bin/$PVM_ARCH. You can then spawn and test as per the usual pvm proedures. A quick start would be as follows
56 |
57 | % pvm
58 | pvm> spawn -> timing
59 | pvm> halt
60 | %
61 |
62 |
63 |
64 |
--------------------------------------------------------------------------------
/src/pvm/pvm.csh:
--------------------------------------------------------------------------------
1 | ## Set up PVM ROOT, ARCH and add to PATH
2 | setenv PVM_ROOT /usr/share/pvm3
3 | setenv PVM_ARCH `$PVM_ROOT/lib/pvmgetarch`
4 | set path=($path $PVM_ROOT/bin/$PVM_ARCH)
5 |
--------------------------------------------------------------------------------
/src/pvm/pvm.sh:
--------------------------------------------------------------------------------
1 | ## Set up PVM ROOT, ARCH and add to PATH
2 | export PVM_ROOT=/usr/share/pvm3
3 | export PVM_ARCH=`$PVM_ROOT/lib/pvmgetarch`
4 | export PATH=$PATH:$PVM_ROOT/bin/$PVM_ARCH
5 |
--------------------------------------------------------------------------------
/src/pvm/version.mk:
--------------------------------------------------------------------------------
1 | NAME = rocks-pvm
2 | VERSION = 3.4.4
3 | RELEASE = 1
4 |
--------------------------------------------------------------------------------
/src/rocks-hpc-profile/Makefile:
--------------------------------------------------------------------------------
1 | # --------------------------------------------------- -*- Makefile -*- --
2 | # $Id: Makefile,v 1.3 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.3 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.2 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.1 2012/05/06 01:11:06 phil
66 | # Add default module definition for rocks-openmpi.
67 | #
68 | # Revision 1.1 2012/05/02 21:06:43 phil
69 | # Move bio.sh bio.csh from node file to RPM
70 | #
71 | #
72 |
73 | PROFILES = rocks-hpc.sh rocks-hpc.csh
74 |
75 | PKGROOT = /opt/rocks
76 | REDHAT.ROOT = $(PWD)/../../
77 |
78 | -include $(ROCKSROOT)/etc/Rules.mk
79 | include Rules.mk
80 | -include $(ROCKSROOT)/etc/python.mk
81 | include python.mk
82 |
83 | build:
84 |
85 | install::
86 | mkdir -p $(ROOT)/etc/profile.d
87 | install -m555 $(PROFILES) $(ROOT)/etc/profile.d
88 |
89 | clean::
90 | rm -rf $(NAME)-$(VERSION)
91 |
--------------------------------------------------------------------------------
/src/rocks-hpc-profile/rocks-hpc.csh:
--------------------------------------------------------------------------------
1 | # $Id: rocks-hpc.csh,v 1.3 2012/11/27 00:49:01 phil Exp $
2 | #
3 | # Default Module Loading For Rocks HPC
4 | #
5 | # @Copyright@
6 | #
7 | # Rocks(r)
8 | # www.rocksclusters.org
9 | # version 6.2 (SideWinder)
10 | # version 7.0 (Manzanita)
11 | #
12 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
13 | # All rights reserved.
14 | #
15 | # Redistribution and use in source and binary forms, with or without
16 | # modification, are permitted provided that the following conditions are
17 | # met:
18 | #
19 | # 1. Redistributions of source code must retain the above copyright
20 | # notice, this list of conditions and the following disclaimer.
21 | #
22 | # 2. Redistributions in binary form must reproduce the above copyright
23 | # notice unmodified and in its entirety, this list of conditions and the
24 | # following disclaimer in the documentation and/or other materials provided
25 | # with the distribution.
26 | #
27 | # 3. All advertising and press materials, printed or electronic, mentioning
28 | # features or use of this software must display the following acknowledgement:
29 | #
30 | # "This product includes software developed by the Rocks(r)
31 | # Cluster Group at the San Diego Supercomputer Center at the
32 | # University of California, San Diego and its contributors."
33 | #
34 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
35 | # neither the name or logo of this software nor the names of its
36 | # authors may be used to endorse or promote products derived from this
37 | # software without specific prior written permission. The name of the
38 | # software includes the following terms, and any derivatives thereof:
39 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
40 | # the associated name, interested parties should contact Technology
41 | # Transfer & Intellectual Property Services, University of California,
42 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
43 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
44 | #
45 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
46 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
47 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
48 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
49 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
50 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
51 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
52 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
53 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
54 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
55 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
56 | #
57 | # @Copyright@
58 | #
59 | # $Log: rocks-hpc.csh,v $
60 | # Revision 1.3 2012/11/27 00:49:01 phil
61 | # Copyright Storm for Emerald Boa
62 | #
63 | # Revision 1.2 2012/05/06 05:49:10 phil
64 | # Copyright Storm for Mamba
65 | #
66 | # Revision 1.1 2012/05/06 01:11:06 phil
67 | # Add default module definition for rocks-openmpi.
68 | #
69 | #
70 |
71 | # Load the rocks-openmpi module if ROCKS_USER_MODULE_DEF not defined
72 | if ( ! $?ROCKS_USER_MODULE_DEF) then
73 | module -s add rocks-openmpi
74 | endif
75 |
76 |
--------------------------------------------------------------------------------
/src/rocks-hpc-profile/rocks-hpc.sh:
--------------------------------------------------------------------------------
1 | # $Id: rocks-hpc.sh,v 1.3 2012/11/27 00:49:01 phil Exp $
2 | #
3 | # load the defaults rocks-openmpi module
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: rocks-hpc.sh,v $
59 | # Revision 1.3 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.2 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.1 2012/05/06 01:11:06 phil
66 | # Add default module definition for rocks-openmpi.
67 | #
68 | #
69 | #
70 |
71 | if [ -z ${ROCKS_USER_MODULE_DEF-""} ]; then
72 | module add rocks-openmpi 2>/dev/null
73 | fi
74 |
--------------------------------------------------------------------------------
/src/rocks-hpc-profile/version.mk:
--------------------------------------------------------------------------------
1 | NAME = rocks-hpc-profile
2 | RELEASE = 1
3 | RPM.FILES = /etc/profile.d/*
4 |
--------------------------------------------------------------------------------
/src/rocks-openmpi-modules/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.2 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | #
59 | # $Log: Makefile,v $
60 | # Revision 1.2 2012/11/27 00:49:01 phil
61 | # Copyright Storm for Emerald Boa
62 | #
63 | # Revision 1.1 2012/09/30 21:58:56 phil
64 | # Update openmpi to 1.6.2.
65 | # Create Modules for ethernet and IB
66 | # Add IB support - packages, openmpi configuration, udev rules
67 | #
68 |
69 | REDHAT.ROOT = $(CURDIR)/../../
70 |
71 | -include $(ROCKSROOT)/etc/Rules.mk
72 | include Rules.mk
73 |
74 | MODULESFILES = rocks-openmpi rocks-openmpi_ib
75 |
76 | %: %.in
77 | $(SED) $(SEDSCRIPT) $^ > $@
78 |
79 | pretar:: $(VERSION.MK.INCLUDE)
80 |
81 | $(VERSION.MK.INCLUDE):
82 | if [ -f $(VERSION.MK.MASTER.DIR)/$(VERSION.MK.MASTER) ]; then \
83 | /bin/cp $(VERSION.MK.MASTER.DIR)/$(VERSION.MK.MASTER) $@; \
84 | fi
85 |
86 | build: $(MODULESFILES)
87 |
88 | install:: $(MODULESFILES)
89 | mkdir -p $(ROOT)/$(PKGROOT)
90 | install -m 755 $(MODULESFILES) $(ROOT)/$(PKGROOT)
91 |
92 | clean::
93 | rm -rf $(NAME).spec.in
94 | rm -rf $(MODULESFILES)
95 | rm -rf $(VERSION.MK.INCLUDE)
96 |
97 |
--------------------------------------------------------------------------------
/src/rocks-openmpi-modules/rocks-openmpi.in:
--------------------------------------------------------------------------------
1 | #%Module1.0#####################################################################
2 | ##
3 | ## rocks-openmpi modulefile
4 | ##
5 | ## modulefiles/
6 | ##
7 | proc ModulesHelp { } {
8 | global rocks-openmpiversion
9 |
10 | puts stderr "\t Use /opt/rocks/openmpi as your MPI"
11 | puts stderr "\n\tVersion $rocks-openmpiversion\n"
12 | }
13 |
14 | module-whatis "Use Rocks-compiled OpenMPI with tcp,self transport"
15 |
16 | # for Tcl script use only
17 | set rocks-openmpiversion @VERSION@
18 |
19 | set mpiHome /opt/openmpi
20 | setenv MPIHOME $mpiHome
21 | setenv OMPI_MCA_btl self,sm,tcp
22 | prepend-path PATH $mpiHome/bin
23 | prepend-path LD_LIBRARY_PATH $mpiHome/lib
24 |
25 |
--------------------------------------------------------------------------------
/src/rocks-openmpi-modules/rocks-openmpi_ib.in:
--------------------------------------------------------------------------------
1 | #%Module1.0#####################################################################
2 | ##
3 | ## rocks-openmpi modulefile
4 | ##
5 | ## modulefiles/
6 | ##
7 | proc ModulesHelp { } {
8 | global rocks-openmpiversion
9 |
10 | puts stderr "\t Use /opt/rocks/openmpi as your MPI"
11 | puts stderr "\n\tVersion $rocks-openmpiversion\n"
12 | }
13 |
14 | module-whatis "Use Rocks-compiled OpenMPI with openib,dapl transports"
15 |
16 | # for Tcl script use only
17 | set rocks-openmpiversion @VERSION@
18 |
19 | set mpiHome /opt/openmpi
20 | setenv MPIHOME $mpiHome
21 | prepend-path PATH $mpiHome/bin
22 | prepend-path LD_LIBRARY_PATH $mpiHome/lib
23 |
24 |
--------------------------------------------------------------------------------
/src/rocks-openmpi-modules/version.mk:
--------------------------------------------------------------------------------
1 | # Get the Openmpi version from it's version.mk file. See Makefile
2 | VERSION.MK.MASTER = version.mk
3 | VERSION.MK.MASTER.DIR = ../openmpi
4 | VERSION.MK.INCLUDE = openmpi.version.mk
5 |
6 | include $(VERSION.MK.INCLUDE)
7 | NAME = rocks-openmpi-modules
8 | RELEASE = 1
9 | RPM.REQUIRES = environment-modules
10 | PKGROOT = /usr/share/Modules/modulefiles
11 | RPM.FILES = $(PKGROOT)/*
12 |
--------------------------------------------------------------------------------
/src/stream/HISTORY.txt:
--------------------------------------------------------------------------------
1 | -------------------------------------------------------------------------
2 |
3 | Revisions as of Thu, Jan 17, 2013 3:50:01 PM
4 |
5 | Version 5.10 of stream.c has been released.
6 | This version includes improved validation code and will automatically
7 | use 64-bit array indices on 64-bit systems to allow very large arrays.
8 |
9 | -------------------------------------------------------------------------
10 |
11 | Revisions as of Thu Feb 19 08:16:57 CST 2009
12 |
13 | Note that the codes in the "Versions" subdirectory should be
14 | considered obsolete -- the versions of stream.c and stream.f
15 | in this main directory include the OpenMP directives and structure
16 | for creating "TUNED" versions.
17 |
18 | Only the MPI version in the "Versions" subdirectory should be
19 | of any interest, and I have not recently checked that version for
20 | errors or compliance with the current versions of stream.c and
21 | stream.f.
22 |
23 | I added a simple Makefile to this directory. It works under Cygwin
24 | on my Windows XP box (using gcc and g77).
25 |
26 | A user suggested a sneaky trick for "mysecond.c" -- instead of using
27 | the #ifdef UNDERSCORE to generate the function name that the Fortran
28 | compiler expects, the new version simply defines both "mysecond()"
29 | and "mysecond_()", so it should automagically link with most Fortran
30 | compilers.
31 |
32 | -------------------------------------------------------------------------
33 |
34 | Revisions as of Wed Nov 17 09:15:37 CST 2004
35 |
36 | The most recent "official" versions have been renamed "stream.f" and
37 | "stream.c" -- all other versions have been moved to the "Versions"
38 | subdirectory.
39 |
40 | The "official" timer (was "second_wall.c") has been renamed "mysecond.c".
41 | This is embedded in the C version ("stream.c"), but still needs to be
42 | externally linked to the FORTRAN version ("stream.f").
43 |
44 | -------------------------------------------------------------------------
45 |
46 | Revisions as of Tue May 27 11:51:23 CDT 2003
47 |
48 | Copyright and License info added to stream_d.f, stream_mpi.f, and
49 | stream_tuned.f
50 |
51 |
52 | -------------------------------------------------------------------------
53 |
54 | Revisions as of Tue Apr 8 10:26:48 CDT 2003
55 |
56 | I changed the name of the timer interface from "second" to "mysecond"
57 | and removed the dummy argument in all versions of the source code (but
58 | not the "Contrib" versions).
59 |
60 |
61 | -------------------------------------------------------------------------
62 |
63 | Revisions as of Mon Feb 25 06:48:14 CST 2002
64 |
65 | Added an OpenMP version of stream_d.c, called stream_d_omp.c. This is
66 | still not up to date with the Fortran version, which includes error
67 | checking and advanced data flow to prevent overoptimization, but it is
68 | a good start....
69 |
70 |
71 | -------------------------------------------------------------------------
72 |
73 | Revisions as of Tue Jun 4 16:31:31 EDT 1996
74 |
75 | I have fixed an "off-by-one" error in the RMS time calculation in
76 | stream_d.f. This was already corrected in stream_d.c. No results are
77 | invalidated, since I use minimum time instead of RMS time anyway....
78 |
79 | -------------------------------------------------------------------------
80 |
81 | Revisions as of Fri Dec 8 14:49:56 EST 1995
82 |
83 | I have renamed the timer routines to:
84 | second_cpu.c
85 | second_wall.c
86 | second_cpu.f
87 |
88 | All have a function interface named 'second' which returns a double
89 | precision floating point number. It should be possible to link
90 | second_wall.c with stream_d.f without too much trouble, though the
91 | details will depend on your environment.
92 |
93 | If anyone builds versions of these timers for machines running the
94 | Macintosh O/S or DOS/Windows, I would appreciate getting a copy.
95 |
96 | To clarify:
97 | * For single-user machines, the wallclock timer is preferred.
98 | * For parallel machines, the wallclock timer is required.
99 | * For time-shared systems, the cpu timer is more reliable,
100 | though less accurate.
101 |
102 |
103 | -------------------------------------------------------------------------
104 |
105 | Revisions as of Wed Oct 25 09:40:32 EDT 1995
106 |
107 | (1) NOTICE to C users:
108 |
109 | stream_d.c has been updated to version 4.0 (beta), and
110 | should be functionally identical to stream_d.f
111 |
112 | Two timers are provided --- second_cpu.c and second_wall.c
113 | second_cpu.c measures cpu time, while second_wall.c measures
114 | elapsed (real) time.
115 |
116 | For single-user machines, the wallclock timer is preferred.
117 | For parallel machines, the wallclock timer is required.
118 | For time-shared systems, the cpu timer is more reliable,
119 | though less accurate.
120 |
121 | (2) cstream.c has been removed -- use stream_d.c
122 |
123 | (3) stream_wall.f has been removed --- to do parallel aggregate
124 | bandwidth runs, comment out the definition of FUNCTION SECOND
125 | in stream_d.f and compile/link with second_wall.c
126 |
127 | (4) stream_offset has been deprecated. It is still here
128 | and usable, but stream_d.f is the "standard" version.
129 | There are easy hooks in stream_d.f to change the
130 | array offsets if you want to.
131 |
132 | (5) The rules of the game are clarified as follows:
133 |
134 | The reference case uses array sizes of 2,000,000 elements
135 | and no additional offsets. I would like to see results
136 | for this case.
137 |
138 | But, you are free to use any array size and any offset
139 | you want, provided that the arrays are each bigger than
140 | the last-level of cache. The output will show me what
141 | parameters you chose.
142 |
143 | I expect that I will report just the best number, but
144 | if there is a serious discrepancy between the reference
145 | case and the "best" case, I reserve the right to report
146 | both.
147 |
148 | Of course, I also reserve the right to reject any results
149 | that I do not trust....
150 | --
151 | John D. McCalpin, Ph.D.
152 | john@mccalpin.com
153 |
--------------------------------------------------------------------------------
/src/stream/LICENSE.txt:
--------------------------------------------------------------------------------
1 | *=======================================================================
2 | *-----------------------------------------------------------------------
3 | * Copyright 1991-2003: John D. McCalpin
4 | *-----------------------------------------------------------------------
5 | * License:
6 | * 1. You are free to use this program and/or to redistribute
7 | * this program.
8 | * 2. You are free to modify this program for your own use,
9 | * including commercial use, subject to the publication
10 | * restrictions in item 3.
11 | * 3. You are free to publish results obtained from running this
12 | * program, or from works that you derive from this program,
13 | * with the following limitations:
14 | * 3a. In order to be referred to as "STREAM benchmark results",
15 | * published results must be in conformance to the STREAM
16 | * Run Rules, (briefly reviewed below) published at
17 | * http://www.cs.virginia.edu/stream/ref.html
18 | * and incorporated herein by reference.
19 | * As the copyright holder, John McCalpin retains the
20 | * right to determine conformity with the Run Rules.
21 | * 3b. Results based on modified source code or on runs not in
22 | * accordance with the STREAM Run Rules must be clearly
23 | * labelled whenever they are published. Examples of
24 | * proper labelling include:
25 | * "tuned STREAM benchmark results"
26 | * "based on a variant of the STREAM benchmark code"
27 | * Other comparable, clear and reasonable labelling is
28 | * acceptable.
29 | * 3c. Submission of results to the STREAM benchmark web site
30 | * is encouraged, but not required.
31 | * 4. Use of this program or creation of derived works based on this
32 | * program constitutes acceptance of these licensing restrictions.
33 | * 5. Absolutely no warranty is expressed or implied.
34 | *-----------------------------------------------------------------------
35 |
--------------------------------------------------------------------------------
/src/stream/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.19 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.19 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.18 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.17 2012/05/06 01:11:06 phil
66 | # Add default module definition for rocks-openmpi.
67 | #
68 | # Revision 1.16 2011/07/23 02:31:06 phil
69 | # Viper Copyright
70 | #
71 | # Revision 1.15 2010/09/07 23:53:21 bruno
72 | # star power for gb
73 | #
74 | # Revision 1.14 2009/05/04 17:56:00 phil
75 | # Update to streams 5.9. Supports OpenMP Threads
76 | #
77 | # Revision 1.13 2009/05/01 19:07:18 mjk
78 | # chimi con queso
79 | #
80 | # Revision 1.12 2008/10/18 00:56:10 mjk
81 | # copyright 5.1
82 | #
83 | # Revision 1.11 2008/10/15 20:13:05 mjk
84 | # - more changes to build outside of the tree
85 | # - removed some old fds-only targets
86 | #
87 | # Revision 1.10 2008/05/21 17:46:56 anoop
88 | # Merginig code from mercurial.
89 | # This change makes the HPC roll more solaris friendly
90 | #
91 | # Revision 1.9 2008/03/06 23:41:54 mjk
92 | # copyright storm on
93 | #
94 | # Revision 1.8 2007/06/23 04:03:41 mjk
95 | # mars hill copyright
96 | #
97 | # Revision 1.7 2007/01/17 15:19:49 bruno
98 | # nuked spec file for stream
99 | #
100 | #
101 |
102 |
103 | RPM.EXTRAS=%define __os_install_post /usr/lib/rpm/brp-compress
104 | REDHAT.ROOT = $(CURDIR)/../../
105 | -include $(ROCKSROOT)/etc/Rules.mk
106 | include Rules.mk
107 | -include $(OS).mk
108 |
109 | SUPPORTFILES = READ.ME HISTORY.txt LICENSE.txt ROCKS.txt
110 | CODEFILES = stream.c stream.f mysecond.c Makefile linux.mk sunos.mk version.mk
111 |
112 | build: stream stream_f
113 |
114 | stream: stream.o
115 | $(CC) $(CFLAGS) -o $@ $^
116 |
117 | stream.o: stream.c
118 | $(CC) $(CFLAGS) -c -DN=$(MEMSIZE) -o$@ $^
119 |
120 | stream_f: stream.f mysecond.o
121 | $(CC) $(CFLAGS) -c mysecond.c
122 | $(FORTRAN) $(FFLAGS) -c stream.f -o stream_f.o
123 | $(FORTRAN) stream_f.o mysecond.o -o stream_f
124 |
125 |
126 | install::
127 | mkdir -p $(ROOT)/$(PKGROOT)/bin
128 | $(INSTALL) -m555 stream stream_f $(ROOT)/$(PKGROOT)/bin
129 | mkdir -p $(ROOT)/$(PKGROOT)/docs
130 | $(INSTALL) -m644 $(SUPPORTFILES) $(CODEFILES) $(ROOT)/$(PKGROOT)/docs
131 |
132 |
133 | clean::
134 | $(RM) -f *.o
135 | $(RM) -f stream stream_f
136 | $(RM) -f $(NAME).spec.in
137 |
138 |
--------------------------------------------------------------------------------
/src/stream/Makefile.stream:
--------------------------------------------------------------------------------
1 | CC = gcc
2 | CFLAGS = -O2
3 |
4 | FF = g77
5 | FFLAGS = -O2
6 |
7 | all: stream_f.exe stream_c.exe
8 |
9 | stream_f.exe: stream.f mysecond.o
10 | $(CC) $(CFLAGS) -c mysecond.c
11 | $(FF) $(FFLAGS) -c stream.f
12 | $(FF) $(FFLAGS) stream.o mysecond.o -o stream_f.exe
13 |
14 | stream_c.exe: stream.c
15 | $(CC) $(CFLAGS) stream.c -o stream_c.exe
16 |
17 | clean:
18 | rm -f stream_f.exe stream_c.exe *.o
19 |
20 | # an example of a more complex build line for the Intel icc compiler
21 | stream.icc: stream.c
22 | icc -O3 -xCORE-AVX2 -ffreestanding -qopenmp -DSTREAM_ARRAY_SIZE=80000000 -DNTIMES=20 stream.c -o stream.omp.AVX2.80M.20x.icc
23 |
--------------------------------------------------------------------------------
/src/stream/READ.ME:
--------------------------------------------------------------------------------
1 | ===============================================
2 |
3 | STREAM is the de facto industry standard benchmark
4 | for measuring sustained memory bandwidth.
5 |
6 | Documentation for STREAM is on the web at:
7 | http://www.cs.virginia.edu/stream/ref.html
8 |
9 | ===============================================
10 | NEWS
11 | ===============================================
12 | UPDATE: October 28 2014:
13 |
14 | "stream_mpi.c" released in the Versions directory.
15 |
16 | Based on Version 5.10 of stream.c, stream_mpi.c
17 | brings the following new features:
18 | * MPI implementation that *distributes* the arrays
19 | across all MPI ranks. (The older Fortran version
20 | of STREAM in MPI *replicates* the arrays across
21 | all MPI ranks.)
22 | * Data is allocated using "posix_memalign"
23 | rather than using static arrays. Different
24 | compiler flags may be needed for both portability
25 | and optimization.
26 | See the READ.ME file in the Versions directory
27 | for more details.
28 | * Error checking and timing done by all ranks and
29 | gathered by rank 0 for processing and output.
30 | * Timing code uses barriers to ensure correct
31 | operation even when multiple MPI ranks run on
32 | shared memory systems.
33 |
34 | NOTE: MPI is not a preferred implementation for
35 | STREAM, which is intended to measure memory
36 | bandwidth in shared-memory systems. In stream_mpi,
37 | the MPI calls are only used to properly synchronize
38 | the timers (using MPI_Barrier) and to gather
39 | timing and error data, so the performance should
40 | scale linearly with the size of the cluster.
41 | But it may be useful, and was an interesting
42 | exercise to develop and debug.
43 |
44 | ===============================================
45 | UPDATE: January 17 2013:
46 |
47 | Version 5.10 of stream.c is finally available!
48 |
49 | There are no changes to what is being measured, but
50 | a number of long-awaited improvements have been made:
51 |
52 | * Updated validation code does not suffer from
53 | accumulated roundoff error for large arrays.
54 | * Defining the preprocessor variable "VERBOSE"
55 | when compiling will (1) cause the code to print the
56 | measured average relative absolute error (rather than
57 | simply printing "Solution Validates", and (2) print
58 | the first 10 array entries with relative error exceeding
59 | the error tolerance.
60 | * Array index variables have been upgraded from
61 | "int" to "ssize_t" to allow arrays with more
62 | than 2 billion elements on 64-bit systems.
63 | * Substantial improvements to the comments in
64 | the source on how to configure/compile/run the
65 | benchmark.
66 | * The proprocessor variable controlling the array
67 | size has been changed from "N" to "STREAM_ARRAY_SIZE".
68 | * A new preprocessor variable "STREAM_TYPE" can be
69 | used to override the data type from the default
70 | "double" to "float".
71 | This mechanism could also be used to change to
72 | non-floating-point types, but several "printf"
73 | statements would need to have their formats changed
74 | to accomodate the modified data type.
75 | * Some small changes in output, including printing
76 | array sizes is GiB as well as MiB.
77 | * Change to the default output format to print fewer
78 | decimals for the bandwidth and more decimals for
79 | the min/max/avg execution times.
80 |
81 |
82 | ===============================================
83 | UPDATE: February 19 2009:
84 |
85 | The most recent "official" versions have been renamed
86 | "stream.f" and "stream.c" -- all other versions have
87 | been moved to the "Versions" subdirectory and should be
88 | considered obsolete.
89 |
90 | The "official" timer (was "second_wall.c") has been
91 | renamed "mysecond.c". This is embedded in the C version
92 | ("stream.c"), but still needs to be externally linked to
93 | the FORTRAN version ("stream.f"). The new version defines
94 | entry points both with and without trailing underscores,
95 | so it *should* link automagically with any Fortran compiler.
96 |
97 | ===============================================
98 |
99 | STREAM is a project of "Dr. Bandwidth":
100 | John D. McCalpin, Ph.D.
101 | john@mccalpin.com
102 |
103 | ===============================================
104 |
105 | The STREAM web and ftp sites are currently hosted at
106 | the Department of Computer Science at the University of
107 | Virginia under the generous sponsorship of Professor Bill
108 | Wulf and Professor Alan Batson.
109 |
110 | ===============================================
111 |
--------------------------------------------------------------------------------
/src/stream/ROCKS.txt:
--------------------------------------------------------------------------------
1 | $Id: ROCKS.txt,v 1.2 2009/05/04 20:47:38 phil Exp $
2 | This is the Rocks-compiled version of streams.
3 | Streams is from the University of Virginia. See Reference section below
4 |
5 | I. Running
6 | $ /opt/stream/bin/stream
7 |
8 | By default this will allocate a thread for each CPU (core it detects
9 | in the system). You can can adjust this for the C
10 | version. It has been compiled with -fopenmp, to run explicitly four
11 | threads
12 |
13 | $ export OMP_NUM_THREADS=4
14 | $ /opt/stream/bin/stream
15 |
16 |
17 | II. Recompiling
18 | The doc directory contains the files used to create streams and the specific
19 | compiler parameters. Openmp threading is on by default for the C version,
20 | off for the fortran version
21 |
22 | To recompile streams (Tested only on a Rocks Frontend) :
23 | 1. edit .mk (1<<32)).
18 |
19 | * Update the Fortran MPI version of STREAM to catch up with the functionality
20 | and features of the C version 5.10
21 |
--------------------------------------------------------------------------------
/src/stream/Versions/READ.ME:
--------------------------------------------------------------------------------
1 | ===============================================
2 | STREAM is the de facto industry standard benchmark
3 | for measuring sustained memory bandwidth.
4 | Documentation for STREAM is on the web at:
5 | http://www.cs.virginia.edu/stream/ref.html
6 | ===============================================
7 | ===============================================
8 | This "Versions" directory holds several variants of
9 | STREAM that are sometimes useful.
10 | ===============================================
11 | ===============================================
12 | Potentially Useful Versions:
13 | 2014-Oct-21 stream_mpi.c
14 | 2014-Oct-21 stream_5-10_posix_memalign.c
15 | 2014-Feb-14 stream_mpi.f
16 | 2012-Aug-14 stream_windows.c
17 |
18 | All older versions have been moved to the "Old"
19 | directory and should not be used.
20 | 2009-Mar-14 stream_omp.c
21 | 2004-Dec-12 stream_tuned.f
22 | 2003-May-27 stream_d.f
23 | 2003-Apr-08 second_cpu.f
24 | 2003-Apr-08 second_cpu.c
25 | 2003-Jan-10 stream_d.c
26 | ===============================================
27 | NEWS AND NOTES
28 | ===============================================
29 | UPDATE: October 28 2014:
30 |
31 | "stream_mpi.c" released.
32 | Based on Version 5.10 of stream.c, stream_mpi.c
33 | brings the following new features:
34 | * MPI implementation that *distributes* the arrays
35 | across all MPI ranks. (The older Fortran version
36 | of STREAM in MPI *replicates* the arrays across
37 | all MPI ranks.)
38 | * Data is allocated using "posix_memalign"
39 | rather than using static arrays. Different
40 | compiler flags may be needed for both portability
41 | and optimization.
42 | For example, on the TACC Stampede system using
43 | the Intel compilers, my standard compile line
44 | for a 4-node run is:
45 | -----------------------------------------
46 | mpicc -O3 -ffreestanding -openmp -mcmodel=medium -restrict -opt-streaming-stores always \
47 | -DSTREAM_ARRAY_SIZE=80000000 -DNTIMES=20 -DVERBOSE \
48 | stream_mpi.c -o stream_mpi
49 |
50 | Notes on flags:
51 | -O3 works OK, as does -O2 in most cases
52 | -ffreestanding don't replace the Copy kernel with a library version
53 | -openmp use OpenMP
54 | -mcmodel=medium allow arrays to be bigger than 4 GiB
55 | -restrict allow use of the C99 "restrict" keyword
56 | -opt-streaming-stores always force streaming stores
57 |
58 | Notes on preprocessor variables:
59 | STREAM_ARRAY_SIZE elements per array (distributed across all ranks)
60 | NTIMES number of iterations to run
61 | VERBOSE print startup and shutdown timing information
62 | -----------------------------------------
63 | * Error checking and timing done by all ranks and
64 | gathered by rank 0 for processing and output.
65 | * Timing code uses barriers to ensure correct
66 | operation even when multiple MPI ranks run on
67 | shared memory systems.
68 |
69 | NOTE: MPI is not a preferred implementation for
70 | STREAM, which is intended to measure memory
71 | bandwidth in shared-memory systems. In stream_mpi,
72 | the MPI calls are only used to properly synchronize
73 | the timers (using MPI_Barrier) and to gather
74 | timing and error data, so the performance should
75 | scale linearly with the size of the cluster.
76 | But it may be useful, and was an interesting
77 | exercise to develop and debug.
78 |
79 | ===============================================
80 | UPDATE: January 17 2013:
81 |
82 | Version 5.10 of stream.c is finally available!
83 |
84 | There are no changes to what is being measured, but
85 | a number of long-awaited improvements have been made:
86 |
87 | * Updated validation code does not suffer from
88 | accumulated roundoff error for large arrays.
89 | * Defining the preprocessor variable "VERBOSE"
90 | when compiling will (1) cause the code to print the
91 | measured average relative absolute error (rather than
92 | simply printing "Solution Validates", and (2) print
93 | the first 10 array entries with relative error exceeding
94 | the error tolerance.
95 | * Array index variables have been upgraded from
96 | "int" to "ssize_t" to allow arrays with more
97 | than 2 billion elements on 64-bit systems.
98 | * Substantial improvements to the comments in
99 | the source on how to configure/compile/run the
100 | benchmark.
101 | * The proprocessor variable controlling the array
102 | size has been changed from "N" to "STREAM_ARRAY_SIZE".
103 | * A new preprocessor variable "STREAM_TYPE" can be
104 | used to override the data type from the default
105 | "double" to "float".
106 | This mechanism could also be used to change to
107 | non-floating-point types, but several "printf"
108 | statements would need to have their formats changed
109 | to accomodate the modified data type.
110 | * Some small changes in output, including printing
111 | array sizes is GiB as well as MiB.
112 | * Change to the default output format to print fewer
113 | decimals for the bandwidth and more decimals for
114 | the min/max/avg execution times.
115 | ===============================================
116 | STREAM is a project of "Dr. Bandwidth":
117 | John D. McCalpin, Ph.D.
118 | john@mccalpin.com
119 | ===============================================
120 | The STREAM web and ftp sites are currently hosted at
121 | the Department of Computer Science at the University of
122 | Virginia under the generous sponsorship of Professor Bill
123 | Wulf and Professor Alan Batson.
124 | ===============================================
125 |
--------------------------------------------------------------------------------
/src/stream/Versions/second_cpu.c:
--------------------------------------------------------------------------------
1 | #include
2 | #include
3 | #include
4 | #include
5 |
6 | double mysecond()
7 | {
8 | long sec;
9 | double secx;
10 | struct tms realbuf;
11 |
12 | times(&realbuf);
13 | secx = ( realbuf.tms_stime + realbuf.tms_utime ) / (float) CLK_TCK;
14 | return ((double) secx);
15 | }
16 |
--------------------------------------------------------------------------------
/src/stream/Versions/second_cpu.f:
--------------------------------------------------------------------------------
1 | *-------------------------------------
2 | * Sample timing routine
3 | * This code works on Sun and Silicon Graphics machines.
4 | * DOUBLE PRECISION function mysecond()
5 | * real arg(2)
6 | * mysecond = etime(arg)
7 | * end
8 | * Sample timing routine
9 | * This code works on IBM RS/6000 machines
10 | DOUBLE PRECISION FUNCTION mysecond()
11 | C ..
12 | C .. External Functions ..
13 | INTEGER mclock
14 | EXTERNAL mclock
15 | C ..
16 | mysecond = mclock()*0.01D0
17 | END
18 |
19 |
--------------------------------------------------------------------------------
/src/stream/Versions/stream_d.c:
--------------------------------------------------------------------------------
1 | # include
2 | # include
3 | # include
4 | # include
5 | # include
6 |
7 | /*
8 | * Program: Stream
9 | * Programmer: Joe R. Zagar
10 | * Revision: 4.0-BETA, October 24, 1995
11 | * Original code developed by John D. McCalpin
12 | *
13 | * This program measures memory transfer rates in MB/s for simple
14 | * computational kernels coded in C. These numbers reveal the quality
15 | * of code generation for simple uncacheable kernels as well as showing
16 | * the cost of floating-point operations relative to memory accesses.
17 | *
18 | * INSTRUCTIONS:
19 | *
20 | * 1) Stream requires a good bit of memory to run. Adjust the
21 | * value of 'N' (below) to give a 'timing calibration' of
22 | * at least 20 clock-ticks. This will provide rate estimates
23 | * that should be good to about 5% precision.
24 | */
25 |
26 | # define N 2000000
27 | # define NTIMES 10
28 | # define OFFSET 0
29 |
30 | /*
31 | * 3) Compile the code with full optimization. Many compilers
32 | * generate unreasonably bad code before the optimizer tightens
33 | * things up. If the results are unreasonably good, on the
34 | * other hand, the optimizer might be too smart for me!
35 | *
36 | * Try compiling with:
37 | * cc -O stream_d.c second_wall.c -o stream_d -lm
38 | *
39 | * This is known to work on Cray, SGI, IBM, and Sun machines.
40 | *
41 | *
42 | * 4) Mail the results to mccalpin@cs.virginia.edu
43 | * Be sure to include:
44 | * a) computer hardware model number and software revision
45 | * b) the compiler flags
46 | * c) all of the output from the test case.
47 | * Thanks!
48 | *
49 | */
50 |
51 | # define HLINE "-------------------------------------------------------------\n"
52 |
53 | # ifndef MIN
54 | # define MIN(x,y) ((x)<(y)?(x):(y))
55 | # endif
56 | # ifndef MAX
57 | # define MAX(x,y) ((x)>(y)?(x):(y))
58 | # endif
59 |
60 | static double a[N+OFFSET],
61 | b[N+OFFSET],
62 | c[N+OFFSET];
63 |
64 | static double rmstime[4] = {0}, maxtime[4] = {0},
65 | mintime[4] = {FLT_MAX,FLT_MAX,FLT_MAX,FLT_MAX};
66 |
67 | static char *label[4] = {"Copy: ", "Scale: ",
68 | "Add: ", "Triad: "};
69 |
70 | static double bytes[4] = {
71 | 2 * sizeof(double) * N,
72 | 2 * sizeof(double) * N,
73 | 3 * sizeof(double) * N,
74 | 3 * sizeof(double) * N
75 | };
76 |
77 | extern double mysecond();
78 |
79 | int
80 | main()
81 | {
82 | int quantum, checktick();
83 | int BytesPerWord;
84 | register int j, k;
85 | double scalar, t, times[4][NTIMES];
86 |
87 | /* --- SETUP --- determine precision and check timing --- */
88 |
89 | printf(HLINE);
90 | BytesPerWord = sizeof(double);
91 | printf("This system uses %d bytes per DOUBLE PRECISION word.\n",
92 | BytesPerWord);
93 |
94 | printf(HLINE);
95 | printf("Array size = %d, Offset = %d\n" , N, OFFSET);
96 | printf("Total memory required = %.1f MB.\n",
97 | (3 * N * BytesPerWord) / 1048576.0);
98 | printf("Each test is run %d times, but only\n", NTIMES);
99 | printf("the *best* time for each is used.\n");
100 |
101 | /* Get initial value for system clock. */
102 |
103 | for (j=0; j= 1)
112 | printf("Your clock granularity/precision appears to be "
113 | "%d microseconds.\n", quantum);
114 | else
115 | printf("Your clock granularity appears to be "
116 | "less than one microsecond.\n");
117 |
118 | t = mysecond();
119 | for (j = 0; j < N; j++)
120 | a[j] = 2.0E0 * a[j];
121 | t = 1.0E6 * (mysecond() - t);
122 |
123 | printf("Each test below will take on the order"
124 | " of %d microseconds.\n", (int) t );
125 | printf(" (= %d clock ticks)\n", (int) (t/quantum) );
126 | printf("Increase the size of the arrays if this shows that\n");
127 | printf("you are not getting at least 20 clock ticks per test.\n");
128 |
129 | printf(HLINE);
130 |
131 | printf("WARNING -- The above is only a rough guideline.\n");
132 | printf("For best results, please be sure you know the\n");
133 | printf("precision of your system timer.\n");
134 | printf(HLINE);
135 |
136 | /* --- MAIN LOOP --- repeat test cases NTIMES times --- */
137 |
138 | scalar = 3.0;
139 | for (k=0; k
44 | # include
45 | # include
46 | # include
47 | # include
48 |
49 | /* INSTRUCTIONS:
50 | *
51 | * 1) Stream requires a good bit of memory to run. Adjust the
52 | * value of 'N' (below) to give a 'timing calibration' of
53 | * at least 20 clock-ticks. This will provide rate estimates
54 | * that should be good to about 5% precision.
55 | */
56 |
57 | # define N 2000000
58 | # define NTIMES 10
59 | # define OFFSET 0
60 |
61 | /*
62 | * 3) Compile the code with full optimization. Many compilers
63 | * generate unreasonably bad code before the optimizer tightens
64 | * things up. If the results are unreasonably good, on the
65 | * other hand, the optimizer might be too smart for me!
66 | *
67 | * Try compiling with:
68 | * cc -O stream_omp.c -o stream_omp
69 | *
70 | * This is known to work on Cray, SGI, IBM, and Sun machines.
71 | *
72 | *
73 | * 4) Mail the results to mccalpin@cs.virginia.edu
74 | * Be sure to include:
75 | * a) computer hardware model number and software revision
76 | * b) the compiler flags
77 | * c) all of the output from the test case.
78 | * Thanks!
79 | *
80 | */
81 |
82 | # define HLINE "-------------------------------------------------------------\n"
83 |
84 | # ifndef MIN
85 | # define MIN(x,y) ((x)<(y)?(x):(y))
86 | # endif
87 | # ifndef MAX
88 | # define MAX(x,y) ((x)>(y)?(x):(y))
89 | # endif
90 |
91 | static double a[N+OFFSET],
92 | b[N+OFFSET],
93 | c[N+OFFSET];
94 |
95 | static double avgtime[4] = {0}, maxtime[4] = {0},
96 | mintime[4] = {FLT_MAX,FLT_MAX,FLT_MAX,FLT_MAX};
97 |
98 | static char *label[4] = {"Copy: ", "Scale: ",
99 | "Add: ", "Triad: "};
100 |
101 | static double bytes[4] = {
102 | 2 * sizeof(double) * N,
103 | 2 * sizeof(double) * N,
104 | 3 * sizeof(double) * N,
105 | 3 * sizeof(double) * N
106 | };
107 |
108 | extern double mysecond();
109 | extern void checkSTREAMresults();
110 | #ifdef TUNED
111 | extern void tuned_STREAM_Copy();
112 | extern void tuned_STREAM_Scale(double scalar);
113 | extern void tuned_STREAM_Add();
114 | extern void tuned_STREAM_Triad(double scalar);
115 | #endif
116 | int
117 | main()
118 | {
119 | int quantum, checktick();
120 | int BytesPerWord;
121 | register int j, k;
122 | double scalar, t, times[4][NTIMES];
123 |
124 | /* --- SETUP --- determine precision and check timing --- */
125 |
126 | printf(HLINE);
127 | BytesPerWord = sizeof(double);
128 | printf("This system uses %d bytes per DOUBLE PRECISION word.\n",
129 | BytesPerWord);
130 |
131 | printf(HLINE);
132 | printf("Array size = %d, Offset = %d\n" , N, OFFSET);
133 | printf("Total memory required = %.1f MB.\n",
134 | (3.0 * BytesPerWord) * ( (double) N / 1048576.0));
135 | printf("Each test is run %d times, but only\n", NTIMES);
136 | printf("the *best* time for each is used.\n");
137 |
138 | #ifdef _OPENMP
139 | printf(HLINE);
140 | #pragma omp parallel private(k)
141 | {
142 | k = omp_get_num_threads();
143 | printf ("Number of Threads requested = %i\n",k);
144 | }
145 | #endif
146 |
147 | /* Get initial value for system clock. */
148 | #pragma omp parallel for
149 | for (j=0; j= 1)
158 | printf("Your clock granularity/precision appears to be "
159 | "%d microseconds.\n", quantum);
160 | else
161 | printf("Your clock granularity appears to be "
162 | "less than one microsecond.\n");
163 |
164 | t = mysecond();
165 | #pragma omp parallel for
166 | for (j = 0; j < N; j++)
167 | a[j] = 2.0E0 * a[j];
168 | t = 1.0E6 * (mysecond() - t);
169 |
170 | printf("Each test below will take on the order"
171 | " of %d microseconds.\n", (int) t );
172 | printf(" (= %d clock ticks)\n", (int) (t/quantum) );
173 | printf("Increase the size of the arrays if this shows that\n");
174 | printf("you are not getting at least 20 clock ticks per test.\n");
175 |
176 | printf(HLINE);
177 |
178 | printf("WARNING -- The above is only a rough guideline.\n");
179 | printf("For best results, please be sure you know the\n");
180 | printf("precision of your system timer.\n");
181 | printf(HLINE);
182 |
183 | /* --- MAIN LOOP --- repeat test cases NTIMES times --- */
184 |
185 | scalar = 3.0;
186 | for (k=0; k
298 |
299 | double mysecond()
300 | {
301 | struct timeval tp;
302 | struct timezone tzp;
303 | int i;
304 |
305 | i = gettimeofday(&tp,&tzp);
306 | return ( (double) tp.tv_sec + (double) tp.tv_usec * 1.e-6 );
307 | }
308 |
309 | void checkSTREAMresults ()
310 | {
311 | double aj,bj,cj,scalar;
312 | double asum,bsum,csum;
313 | double epsilon;
314 | int j,k;
315 |
316 | /* reproduce initialization */
317 | aj = 1.0;
318 | bj = 2.0;
319 | cj = 0.0;
320 | /* a[] is modified during timing check */
321 | aj = 2.0E0 * aj;
322 | /* now execute timing loop */
323 | scalar = 3.0;
324 | for (k=0; k= 0 ? (a) : -(a))
350 | epsilon = 1.e-8;
351 |
352 | if (abs(aj-asum)/asum > epsilon) {
353 | printf ("Failed Validation on array a[]\n");
354 | printf (" Expected : %f \n",aj);
355 | printf (" Observed : %f \n",asum);
356 | }
357 | else if (abs(bj-bsum)/bsum > epsilon) {
358 | printf ("Failed Validation on array b[]\n");
359 | printf (" Expected : %f \n",bj);
360 | printf (" Observed : %f \n",bsum);
361 | }
362 | else if (abs(cj-csum)/csum > epsilon) {
363 | printf ("Failed Validation on array c[]\n");
364 | printf (" Expected : %f \n",cj);
365 | printf (" Observed : %f \n",csum);
366 | }
367 | else {
368 | printf ("Solution Validates\n");
369 | }
370 | }
371 |
372 | void tuned_STREAM_Copy()
373 | {
374 | int j;
375 | #pragma omp parallel for
376 | for (j=0; j
9 |
10 | double mysecond()
11 | {
12 | /* struct timeval { long tv_sec;
13 | long tv_usec; };
14 |
15 | struct timezone { int tz_minuteswest;
16 | int tz_dsttime; }; */
17 |
18 | struct timeval tp;
19 | struct timezone tzp;
20 | int i;
21 |
22 | i = gettimeofday(&tp,&tzp);
23 | return ( (double) tp.tv_sec + (double) tp.tv_usec * 1.e-6 );
24 | }
25 |
26 | double mysecond_() {return mysecond();}
27 |
28 |
--------------------------------------------------------------------------------
/src/stream/sunos.mk:
--------------------------------------------------------------------------------
1 | stream:
2 | CFLAGS = -O3
3 | FORTRAN = f95
4 | FFLAGS = -03
5 | MEMSIZE=10000000
6 |
--------------------------------------------------------------------------------
/src/stream/version.mk:
--------------------------------------------------------------------------------
1 | NAME = stream
2 | VERSION = 5.10
3 | RELEASE = 1
4 |
5 | PKGROOT = /opt/stream
6 | RPM.FILES = $(PKGROOT)
7 |
--------------------------------------------------------------------------------
/src/sunos.mk:
--------------------------------------------------------------------------------
1 | SRCDIRS = iozone iperf mpi-tests \
2 | stream sun-ct
3 |
--------------------------------------------------------------------------------
/src/usersguide/Makefile:
--------------------------------------------------------------------------------
1 | #
2 | # $Id: Makefile,v 1.28 2012/11/27 00:49:01 phil Exp $
3 | #
4 | # @Copyright@
5 | #
6 | # Rocks(r)
7 | # www.rocksclusters.org
8 | # version 6.2 (SideWinder)
9 | # version 7.0 (Manzanita)
10 | #
11 | # Copyright (c) 2000 - 2017 The Regents of the University of California.
12 | # All rights reserved.
13 | #
14 | # Redistribution and use in source and binary forms, with or without
15 | # modification, are permitted provided that the following conditions are
16 | # met:
17 | #
18 | # 1. Redistributions of source code must retain the above copyright
19 | # notice, this list of conditions and the following disclaimer.
20 | #
21 | # 2. Redistributions in binary form must reproduce the above copyright
22 | # notice unmodified and in its entirety, this list of conditions and the
23 | # following disclaimer in the documentation and/or other materials provided
24 | # with the distribution.
25 | #
26 | # 3. All advertising and press materials, printed or electronic, mentioning
27 | # features or use of this software must display the following acknowledgement:
28 | #
29 | # "This product includes software developed by the Rocks(r)
30 | # Cluster Group at the San Diego Supercomputer Center at the
31 | # University of California, San Diego and its contributors."
32 | #
33 | # 4. Except as permitted for the purposes of acknowledgment in paragraph 3,
34 | # neither the name or logo of this software nor the names of its
35 | # authors may be used to endorse or promote products derived from this
36 | # software without specific prior written permission. The name of the
37 | # software includes the following terms, and any derivatives thereof:
38 | # "Rocks", "Rocks Clusters", and "Avalanche Installer". For licensing of
39 | # the associated name, interested parties should contact Technology
40 | # Transfer & Intellectual Property Services, University of California,
41 | # San Diego, 9500 Gilman Drive, Mail Code 0910, La Jolla, CA 92093-0910,
42 | # Ph: (858) 534-5815, FAX: (858) 534-7345, E-MAIL:invent@ucsd.edu
43 | #
44 | # THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS''
45 | # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
46 | # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
47 | # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS
48 | # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
49 | # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
50 | # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR
51 | # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
52 | # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
53 | # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN
54 | # IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
55 | #
56 | # @Copyright@
57 | #
58 | # $Log: Makefile,v $
59 | # Revision 1.28 2012/11/27 00:49:01 phil
60 | # Copyright Storm for Emerald Boa
61 | #
62 | # Revision 1.27 2012/05/06 05:49:10 phil
63 | # Copyright Storm for Mamba
64 | #
65 | # Revision 1.26 2011/07/23 02:31:07 phil
66 | # Viper Copyright
67 | #
68 | # Revision 1.25 2010/09/07 23:53:21 bruno
69 | # star power for gb
70 | #
71 | # Revision 1.24 2010/03/25 17:08:56 bruno
72 | # doc bug
73 | #
74 | # Revision 1.23 2009/05/01 19:07:19 mjk
75 | # chimi con queso
76 | #
77 | # Revision 1.22 2008/10/18 00:56:10 mjk
78 | # copyright 5.1
79 | #
80 | # Revision 1.21 2008/10/15 20:13:05 mjk
81 | # - more changes to build outside of the tree
82 | # - removed some old fds-only targets
83 | #
84 | # Revision 1.20 2008/04/14 22:31:08 bruno
85 | # new HPC roll user's guide
86 | #
87 | # Revision 1.15 2008/03/06 23:41:29 mjk
88 | # copyright storm on
89 | #
90 | # Revision 1.14 2007/06/23 04:03:17 mjk
91 | # mars hill copyright
92 | #
93 | # Revision 1.13 2006/09/19 18:45:24 mjk
94 | # fix roll manual name
95 | #
96 | # Revision 1.12 2006/09/14 23:54:35 mjk
97 | # *** empty log message ***
98 | #
99 | # Revision 1.11 2006/09/11 22:46:54 mjk
100 | # monkey face copyright
101 | #
102 | # Revision 1.10 2006/09/11 22:23:14 bruno
103 | # no more jpg images
104 | #
105 | # Revision 1.9 2006/08/10 00:09:22 mjk
106 | # 4.2 copyright
107 | #
108 | # Revision 1.8 2005/10/18 20:20:30 bruno
109 | # automatically set the copyright date
110 | #
111 | # Revision 1.7 2005/10/12 18:08:24 mjk
112 | # final copyright for 4.1
113 | #
114 | # Revision 1.6 2005/09/16 01:02:04 mjk
115 | # updated copyright
116 | #
117 | # Revision 1.5 2005/05/24 21:21:38 mjk
118 | # update copyright, release is not any closer
119 | #
120 | # Revision 1.4 2005/04/05 20:28:22 nadya
121 | # move logic of creating rocks.dsl, rocks.css and stylesheet-images to Rules.mk
122 | # Add target predoc in order to make docs in a local directory
123 | #
124 | # Revision 1.3 2004/10/21 01:31:52 mjk
125 | # *** empty log message ***
126 | #
127 | # Revision 1.2 2004/10/21 01:21:13 mjk
128 | # fix version
129 | #
130 | # Revision 1.1 2004/05/20 23:21:28 bruno
131 | # added documentation
132 | #
133 | #
134 |
135 | REDHAT.ROOT = $(PWD)/../../
136 |
137 | -include $(ROCKSROOT)/etc/Rules.mk
138 | include Rules.mk
139 |
140 | default: $(NAME).spec ../$(NAME)-$(VERSION).tar.gz
141 |
142 | html: predoc
143 | jw --backend html --dsl $(PWD)/rocks.dsl#html index.sgml
144 |
145 | pdf: predoc
146 | jw --backend pdf --dsl $(PWD)/rocks.dsl#print index.sgml
147 |
148 | build: html pdf
149 |
150 | install:: build
151 | mkdir -p $(ROOT)/$(PKGROOT)/images
152 | mkdir -p $(ROOT)/$(PKGROOT)/stylesheet-images
153 | install -ma+r index.pdf $(ROOT)/$(PKGROOT)/$(NAME).pdf
154 | install -ma+r *.html $(ROOT)/$(PKGROOT)/
155 | install -ma+r images/*.png $(ROOT)/$(PKGROOT)/images/
156 | install -ma+r stylesheet-images/{*.gif,*.png} \
157 | $(ROOT)/$(PKGROOT)/stylesheet-images/
158 | install -ma+r rocks.css $(ROOT)/$(PKGROOT)/
159 |
160 | clean::
161 | rm -f *.html
162 | rm -f index.pdf
163 |
164 |
165 |
--------------------------------------------------------------------------------
/src/usersguide/appendix.sgml:
--------------------------------------------------------------------------------
1 |
31 |
32 |
33 | &rocks; Copyright
34 |
35 |
36 | &rockscopyright;
37 |
38 |
39 |
40 |
41 |
42 | Third Party Copyrights and Licenses
43 |
44 | &source-roll-copyright-disclaimer;
45 |
46 | iozone
47 | Original Author: William Norcott (wnorcott@us.oracle.com)
48 | 4 Dunlap Drive
49 | Nashua, NH 03060
50 |
51 | Enhancements: Don Capps (capps@iozone.org)
52 | 7417 Crenshaw
53 | Plano, TX 75025
54 |
55 | Copyright 1991, 1992, 1994, 1998, 1999, 2002 William D. Norcott
56 |
57 | License to freely use and distribute this software is hereby granted
58 | by the author, subject to the condition that this copyright notice
59 | remains intact. The author retains the exclusive right to publish
60 | derivative works based on this work, including, but not limited to,
61 | revised versions of this work.
62 |
63 |
64 | iperf
65 |
77 | Mark Gates
78 | Ajay Tirumala
79 | Jim Ferguson
80 | Jon Dugan
81 | Feng Qin
82 | Kevin Gibbs
83 | National Laboratory for Applied Network Research
84 | National Center for Supercomputing Applications
85 | University of Illinois at Urbana-Champaign
86 | http://www.ncsa.uiuc.edu
87 |
88 | Permission is hereby granted, free of charge, to any person obtaining a
89 | copy of this software (Iperf) and associated documentation files (the
90 | "Software"), to deal in the Software without restriction, including
91 | without limitation the rights to use, copy, modify, merge, publish,
92 | distribute, sublicense, and/or sell copies of the Software, and to
93 | permit persons to whom the Software is furnished to do so, subject to
94 | the following conditions:
95 |
96 | * Redistributions of source code must retain the above copyright
97 | notice, this list of conditions and the following disclaimers.
98 |
99 | * Redistributions in binary form must reproduce the above copyright
100 | notice, this list of conditions and the following disclaimers in
101 | the documentation and/or other materials provided with the
102 | distribution.
103 |
104 | * Neither the names of the University of Illinois, NCSA, nor the
105 | names of its contributors may be used to endorse or promote
106 | products derived from this Software without specific prior written
107 | permission.
108 |
109 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
110 | OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
111 | MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
112 | IN NO EVENT SHALL THE CONTIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
113 | CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
114 | TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
115 | SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
116 | ]]>
117 |
118 |
119 |
166 |
167 |
207 |
208 |
277 |
278 |
307 |
308 |
340 |
341 |
342 |
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/src/usersguide/images/hpc.png:
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/src/usersguide/index.sgml:
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1 |
26 |
28 | %entities;
29 | ]>
30 |
31 |
32 |
33 |
34 | &roll-hpc; Users Guide
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 | &document-version;
45 | &document-pubdate;
46 |
47 | &document-year;
48 | &document-copyright;
49 |
50 |
51 |
52 | (PDF version)
53 |
54 |
55 |
56 |
57 | This document is subject to the &rocks; License
58 | (see ).
59 |
60 |
61 |
62 |
63 |
64 | &source-preface;
65 | &source-roll-overview;
66 | &source-installing;
67 | &source-using;
68 | &source-appendix;
69 |
70 |
71 |
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/src/usersguide/installing.sgml:
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1 |
2 |
3 |
4 | Installing
5 |
6 | &source-roll-installing-standard;
7 |
8 | &source-roll-installing-onthefly;
9 |
10 |
11 |
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/src/usersguide/interactive.sgml:
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1 |
2 | Environment Modules for OpenMPI
3 |
4 |
5 | As of Rocks 5.5 and 6.0 (Mamba), Environment Modules are utilized to control
6 | MPI path names. By default the rocks-openmpi module is loaded and
7 | is openmpi compiled with gnu compiler and the ethernet device.
8 |
9 |
10 |
11 |
12 |
13 |
14 | To see the currently loaded modules:
15 |
16 |
17 |
18 | % module list
19 | Currently Loaded Modulefiles:
20 | 1) rocks-openmpi
21 | %
22 |
23 |
24 |
25 |
26 |
27 | To see available modules:
28 |
29 |
30 |
31 | % module avail
32 | ------------------------ /usr/share/Modules/modulefiles ------------------------
33 | dot module-info null use.own
34 | module-cvs modules rocks-openmpi
35 |
36 | ------------------------ /usr/share/Modules/modulefiles ------------------------
37 | dot module-info null use.own
38 | module-cvs modules rocks-openmpi
39 | %
40 |
41 |
42 |
43 |
44 |
45 |
46 | To NOT load the Rocks default module Definition. Set the environment
47 | variable ROCKS_MODULE_USER_DEF to a non-zero string.
48 |
49 |
50 |
51 | export ROCKS_USER_MODULE_DEF=True
52 |
53 |
54 | if modules are already loaded, then ROCKS_USER_MODULE_DEF will not
55 | unload already loaded modules. If you do not want the Rocks default then set the above definition in your $HOME/.bashrc or $HOME/.cshrc files
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 | Using mpirun from OpenMPI
65 |
66 |
67 | To interactively launch a test OpenMPI program on two processors:
68 |
69 |
70 |
71 |
72 |
73 |
74 | Create a file in your home directory named
75 | machines,
76 | and put two entries in it, such as:
77 |
78 |
79 |
80 | compute-0-0
81 | compute-0-1
82 |
83 |
84 |
85 |
86 |
87 | Now launch the job from the frontend:
88 |
89 |
90 |
91 | $ ssh-agent $SHELL
92 | $ ssh-add
93 | $ /opt/openmpi/bin/mpirun -np 2 -machinefile machines /opt/mpi-tests/bin/mpi-ring
94 |
95 |
96 |
97 |
98 |
99 | You must run MPI programs as a regular user (that is, not root).
100 |
101 |
102 |
103 | If you don't have a user account on the cluster, create one
104 | for yourself, and propogate the information to the compute nodes with:
105 |
106 |
107 | # useradd username
108 | # rocks sync users
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 | Using mpirun from MPICH
123 |
124 |
125 | To interactively launch a test MPICH program on two processors:
126 |
127 |
128 |
129 |
130 |
131 |
132 | Create a file in your home directory named
133 | machines,
134 | and put two entries in it, such as:
135 |
136 |
137 |
138 | compute-0-0
139 | compute-0-1
140 |
141 |
142 |
143 |
144 |
145 | Compile a test program using the MPICH environment:
146 |
147 |
148 |
149 | $ cd $HOME
150 | $ mkdir mpich-test
151 | $ cd mpich-test
152 | $ cp /opt/mpi-tests/src/mpi-ring.c .
153 | $ /opt/mpich/gnu/bin/mpicc -o mpi-ring mpi-ring.c -lm
154 |
155 |
156 |
157 |
158 |
159 | Now launch the job from the frontend:
160 |
161 |
162 |
163 | $ ssh-agent $SHELL
164 | $ ssh-add
165 | $ /opt/mpich/gnu/bin/mpirun -nolocal -np 2 -machinefile $HOME/machines \
166 | $HOME/mpich-test/mpi-ring
167 |
168 |
169 |
170 |
171 |
172 | You must run MPI programs as a regular user (that is, not root).
173 |
174 |
175 |
176 | If you don't have a user account on the cluster, create one
177 | for yourself, and propogate the information to the compute nodes with:
178 |
179 |
180 | # useradd username
181 | # rocks sync users
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
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/src/usersguide/preface.sgml:
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1 |
2 | Preface
3 |
4 |
5 |
6 | The primary purpose of the HPC Roll is to provide configured software
7 | tools that can be used to run parallel applications on your cluster.
8 |
9 |
10 |
11 |
12 | The following software packages are included in the HPC Roll:
13 |
14 |
15 |
16 |
17 |
18 |
19 |
20 | MPI over ethernet environments (OpenMPI, MPICH, MPICH2)
21 |
22 |
23 |
24 |
25 |
26 | PVM
27 |
28 |
29 |
30 |
31 |
32 | Benchmarks (stream, iperf, IOzone)
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
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/src/usersguide/using.sgml:
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1 |
2 |
3 | Using
4 |
5 | &source-interactive;
6 |
7 |
8 |
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/src/usersguide/version.mk:
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1 | NAME = roll-$(ROLL)-usersguide
2 | RELEASE = 0
3 | RPM.ARCH = noarch
4 | PKGROOT = /var/www/html/roll-documentation/hpc/$(VERSION)
5 |
6 | SUMMARY_COMPATIBLE = $(VERSION)
7 | SUMMARY_MAINTAINER = Rocks Group
8 | SUMMARY_ARCHITECTURE = i386, x86_64
9 |
10 | ROLL_REQUIRES = base kernel os
11 | ROLL_CONFLICTS =
12 |
13 | RPM.FILES = $(PKGROOT)
14 |
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/version.mk:
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1 | ROLLNAME = hpc
2 | RELEASE = 0
3 | COLOR = green
4 |
5 | REDHAT.ROOT = $(PWD)
6 |
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