├── .gitignore ├── LICENSE.md ├── README.md ├── numerics ├── benchmark_datasets.m ├── benchmark_phat.m ├── benchmark_pms.m ├── benchmark_roc.m ├── datasets │ └── README.md ├── dependencies │ └── README.md ├── figures │ └── README.md ├── init.m ├── install.sh ├── run.sh └── utils │ ├── cmo2dat.m │ ├── complex_factory.m │ ├── create_color_palette.m │ ├── dat2cmo.m │ ├── eps_to_pdf.m │ ├── example_factory.m │ ├── get_true_low.m │ ├── phat.m │ ├── plot_matrix.m │ ├── pointcloud_to_boundary_matrix.m │ ├── pointcloud_to_vr_stream.m │ ├── spy_tda.m │ └── stream2cmo.m └── src ├── cuda ├── algorithms │ ├── algorithm_factory.cu │ ├── kernels.cu │ ├── kernels_host.cu │ ├── ph_row │ │ ├── ph_row.cu │ │ └── ph_row_parallel.cu │ ├── pms │ │ ├── beta.cu │ │ ├── pms.cu │ │ └── pms_functions.cu │ ├── standard │ │ ├── standard.cu │ │ └── standard_parallel.cu │ ├── tracker.cu │ └── twist │ │ ├── twist.cu │ │ └── twist_parallel.cu ├── debug_tools.cu ├── dimensions.cu ├── functions.cu ├── functions_host.cu 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