├── 01-Filtering.R ├── 02-Population_Structure.R ├── 03-Environmental_data.R ├── 04-Spatial_genetic_structure.R ├── 05-PCadapt.R ├── 06-GEA_RDA_Mahalanobis.R ├── 07-LFMM2.R ├── 08-Venn_Diagram.R ├── 09-RDA_Final.R ├── 10-sPCA.R ├── 11-RDA_predict.R ├── LICENSE └── README.md /01-Filtering.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/01-Filtering.R -------------------------------------------------------------------------------- /02-Population_Structure.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/02-Population_Structure.R -------------------------------------------------------------------------------- /03-Environmental_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/03-Environmental_data.R -------------------------------------------------------------------------------- /04-Spatial_genetic_structure.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/04-Spatial_genetic_structure.R -------------------------------------------------------------------------------- /05-PCadapt.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/05-PCadapt.R -------------------------------------------------------------------------------- /06-GEA_RDA_Mahalanobis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/06-GEA_RDA_Mahalanobis.R -------------------------------------------------------------------------------- /07-LFMM2.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/07-LFMM2.R -------------------------------------------------------------------------------- /08-Venn_Diagram.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/08-Venn_Diagram.R -------------------------------------------------------------------------------- /09-RDA_Final.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/09-RDA_Final.R -------------------------------------------------------------------------------- /10-sPCA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/10-sPCA.R -------------------------------------------------------------------------------- /11-RDA_predict.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/11-RDA_predict.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rojaff/LanGen_pipeline/HEAD/README.md --------------------------------------------------------------------------------