├── README.md
├── preprocessed_data.txt
└── tcga_data.txt


/README.md:
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1 | # thesis
2 | 


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/preprocessed_data.txt:
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 1 | A1CF	A2M	A2ML1	AARS2	AASDH	IRS1	IRS4	IRX1	IRX6	ISL1	ISLR2	ZSWIM5	ZXDA	ZXDC	ZZEF1	ZZZ3
 2 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 3 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 4 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 5 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 6 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 7 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 8 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
 9 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10 | 0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
11 | 0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
12 | 


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/tcga_data.txt:
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1 | "Tumor_Sample"	"Gene"	"Chromosome"	"Start_Position.GRCh37."	"Variant_Classification"	"Reference_Allele"	"Variant_Allele"	"Transcript_Name.Ensembl_69."	"amino_acid_change."	"Cancer.Type"
2 | "1"	"TCGA-02-0003-01A-01D-1490-08"	"ENSG00000259660"	"15"	102292749	"RNA"	"A"	"C"	"ENST00000561463"	"NULL"	"gbm"
3 | "2"	"TCGA-02-0003-01A-01D-1490-08"	"HRH2"	"5"	175110351	"Missense"	"G"	"A"	"ENST00000377291"	"p.V39I"	"gbm"
4 | "7"	"TCGA-02-0003-01A-01D-1490-08"	"NR1I3"	"1"	161206281	"Silent"	"C"	"T"	"ENST00000515452"	"p.A25"	"gbm"
5 | "47"	"TCGA-02-0003-01A-01D-1490-08"	"AASS"	"7"	121717919	"Frame_Shift_Ins"	"-"	"G"	"ENST00000393376"	"p.A878fs"	"gbm"
6 | "85"	"TCGA-02-0033-01A-01D-1490-08"	"GPR19"	"12"	12814147	"In_Frame_Del"	"ATTTGGTGG"	"-"	"ENST00000332427"	"p.PPN410in_frame_del"	"gbm"
7 | 


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