├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── DataStorageClass.R ├── IC.R ├── Learner_syntax.R ├── MSM_generic.R ├── MSM_hazard_flexible.R ├── MSM_hazard_time.R ├── ModelBinomial.R ├── ModelCategorical.R ├── ModelContinuous.R ├── ModelGeneric.R ├── ModelNULLOutcome.R ├── ModelQlearn.R ├── ModelStratified.R ├── QlearningClasses_SDR.R ├── QlearningClasses_SDR_transform.R ├── QlearningClasses_SplitSpecSDR.R ├── RegressionControlClasses.R ├── TMLE_updaters.R ├── fit_single_regression.R ├── ggsurv.R ├── helper_routines.R ├── helper_routines_h2o.R ├── main_estimation.R ├── reports.R ├── stremr-package.R ├── stremr.R ├── summaryS3methods.R ├── surv_plot.R ├── tmle.R ├── tmle_SDR_iTMLE.R ├── tmle_pooled.R └── zzz.R ├── README.Rmd ├── README.md ├── cran-comments.md ├── data ├── OdatDT_10K.rda ├── OdataCatCENS.rda ├── OdataNoCENS.rda ├── dt_1t.rda └── dt_2t.rda ├── inst ├── Bib │ └── README-refs.bib ├── parallelTMLE_script_1simple.R ├── parallelTMLE_script_2tidy.R └── report │ └── report-script-rmd.R ├── man ├── OdatDT_10K.Rd ├── OdataCatCENS.Rd ├── OdataNoCENS.Rd ├── TMLE.updater.NULL.Rd ├── TMLE.updater.glm.Rd ├── defModel.Rd ├── defineIntervedTRT.Rd ├── defineMONITORvars.Rd ├── define_CVfolds.Rd ├── define_single_regression.Rd ├── directIPW.Rd ├── dt_1t.Rd ├── dt_2t.Rd ├── f_plot_survest.Rd ├── fitPropensity.Rd ├── fit_CVTMLE.Rd ├── fit_GCOMP.Rd ├── fit_TMLE.Rd ├── fit_gMSM.Rd ├── fit_hMSM.Rd ├── fit_iTMLE.Rd ├── fit_iterTMLE.Rd ├── fit_pooled_GCOMP.Rd ├── fit_pooled_TMLE.Rd ├── getIPWeights.Rd ├── get_FUPtimes.Rd ├── get_MSM_RDs.Rd ├── get_RDs.Rd ├── get_TMLE_RDs.Rd ├── get_data.Rd ├── get_wtsummary.Rd ├── ggRD.Rd ├── ggsurv.Rd ├── iTMLE.updater.glm.Rd ├── iTMLE.updater.xgb.Rd ├── importData.Rd ├── linear.TMLE.updater.speedglm.Rd ├── make_report_rmd.Rd ├── openFileInOS.Rd ├── pander.H2OBinomialMetrics.Rd ├── pander.H2OGrid.Rd ├── pander.H2ORegressionMetrics.Rd ├── print.GLMmodel.Rd ├── print.H2Oensemblemodel.Rd ├── print.ModelStack.Rd ├── print_RDs.Rd ├── print_stremr_opts.Rd ├── print_tables.Rd ├── remove_g.Rd ├── set_all_stremr_options.Rd ├── stremr-package.Rd ├── stremr.Rd ├── stremrOptions.Rd ├── summary.GLMmodel.Rd ├── summary.H2ORegressionModel.Rd ├── summary.H2Oensemblemodel.Rd ├── summary.xgb.Booster.Rd ├── survMSM.Rd ├── survNPMSM.Rd └── trim_rows_after_tmax.Rd └── tests ├── RUnit ├── 0_simulate_data_1.R ├── 0_simulate_data_2.R ├── RUnit_tests_00.R ├── RUnit_tests_01_form_g_stratification.R ├── RUnit_tests_02a_categCENS.R ├── RUnit_tests_02b_DataStorageClass.R ├── RUnit_tests_03a_tidy_syntax.R ├── RUnit_tests_03b_tidy_syntax_GLM.R ├── RUnit_tests_03c_buildingblocks.R ├── RUnit_tests_04a_sims10K_speedglm.R ├── RUnit_tests_04b_sims10K_h2oGLM.R ├── RUnit_tests_04c_sims10K_h2oML.R ├── RUnit_tests_04d_sims10K_xgb.R ├── RUnit_tests_04e_sims10K_xgb_GCOMPparallel.R ├── RUnit_tests_06_direct_regression_def.R ├── RUnit_tests_07_iterativeTMLE.R ├── 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