├── .Rbuildignore ├── .gitattributes ├── .github ├── CONTRIBUTING.md ├── issue_template.md ├── pull_request_template.md └── workflows │ ├── R-check.yaml │ └── revdep-check.yml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── as.ft_data.R ├── as_ftdmurl.R ├── bio_utils.R ├── bmc_utils.R ├── cache.R ├── cache_clean.R ├── chunks.R ├── collect.R ├── defunct.R ├── europe_pmc_utils.R ├── ft_abstract.R ├── ft_browse.R ├── ft_cr_links.R ├── ft_extract.R ├── ft_get.R ├── ft_links.R ├── ft_providers.R ├── ft_search.R ├── ft_serialize.R ├── ft_table.R ├── ftd_doi.R ├── ftdoi_cache.R ├── ftdoi_http.R ├── ftdoi_member_map.R ├── ftdoi_other.R ├── ftdoi_patterns.R ├── ftdoi_publisher_plugin_helpers.R ├── ftdoi_publisher_plugins.R ├── ftdoi_storr_funs.R ├── ftxt_cache.R ├── fulltext-package.R ├── fulltext-warnings.R ├── ma_utils.R ├── normalize_doi.R ├── on_load.R ├── pipe.R ├── plugins_abstract.R ├── plugins_get.R ├── plugins_get_links.R ├── plugins_links.R ├── plugins_search.R ├── scopus_utils.R ├── sysdata.rda └── zzz.R ├── README-not.md ├── README.Rmd ├── README.md ├── codemeta.json ├── cran-comments.md ├── inst ├── examples │ ├── elife.xml │ ├── example1.pdf │ ├── example1.txt │ └── example2.pdf └── ignore │ ├── bmc_xml.R │ ├── cache_extra_code.R │ ├── cache_old_code.R │ ├── config.R │ ├── crossref_prefixes_member-ids.R │ ├── ft_extract_corpus.R │ ├── old_publisher_specific_funs.R │ ├── pdfx.R │ ├── plugins_get_old.R │ ├── test-collect.R │ └── test-dois.R ├── man ├── as.ft_data.Rd ├── as_ftdmurl.Rd ├── biorxiv_search.Rd ├── bmc_search.Rd ├── cache.Rd ├── cache_file_info.Rd ├── chunks-defunct.Rd ├── collect-defunct.Rd ├── eupmc.Rd ├── ft_abstract.Rd ├── ft_browse.Rd ├── ft_browse_sections-defunct.Rd ├── ft_chunks-defunct.Rd ├── ft_collect.Rd ├── ft_cr_links.Rd ├── ft_extract.Rd ├── ft_extract_corpus-defunct.Rd ├── ft_get-warnings.Rd ├── ft_get.Rd ├── ft_get_si-defunct.Rd ├── ft_links.Rd ├── ft_providers.Rd ├── ft_search.Rd ├── ft_serialize.Rd ├── ft_table.Rd ├── ft_tabularize-defunct.Rd ├── ftd_doi.Rd ├── ftd_fetch_patterns.Rd ├── ftd_members.Rd ├── ftd_prefixes.Rd ├── ftdoi_cache.Rd ├── ftxt_cache.Rd ├── fulltext-defunct.Rd ├── fulltext-package.Rd ├── get_text-defunct.Rd ├── microsoft-internals.Rd ├── pdfx-defunct.Rd ├── pipe.Rd ├── prefix_local.Rd ├── scopus_search.Rd └── tabularize-defunct.Rd ├── revdep ├── README.md ├── check.R ├── checks.rds ├── failures.md └── problems.md ├── tests ├── files │ ├── 10_1016_s0014_5793_01_02862_9.xml │ └── 10_1016_s0014_5793_01_02864_2.xml ├── fixtures │ ├── fat_cat_search.yml │ ├── fat_cat_search_one.yml │ ├── ft_abstract_crossref.yml │ ├── ft_abstract_plos.yml │ ├── ft_collect_prep.yml │ ├── ft_get_wiley.yml │ ├── ft_providers.yml │ ├── ft_search.yml │ ├── ft_search_crossref.yml │ ├── ft_search_entrez.yml │ ├── ft_search_fails_well_biorxiv_no_results.yml │ ├── ft_search_fails_well_entrez_limit2large.yml │ ├── ft_search_fails_well_plos_no_results.yml │ ├── ft_search_plos.yml │ ├── ft_search_scopus.yml │ └── get_publisher2.yml ├── longtests │ ├── example1.pdf │ └── test-pdfx.R ├── test-all.R └── testthat │ ├── dois │ ├── dois_frontiers.rda │ ├── dois_karger.rda │ └── dois_pnas.rda │ ├── helper-fulltext.R │ ├── test-as.ft_data.R │ ├── test-cache_file_info.R │ ├── test-caching.R │ ├── test-ft_abstract.R │ ├── test-ft_browse.R │ ├── test-ft_collect.R │ ├── test-ft_extract.R │ ├── test-ft_get.r │ ├── test-ft_get_utils.R │ ├── test-ft_links.R │ ├── test-ft_providers.R │ ├── test-ft_search.R │ ├── test-ft_serialize.R │ ├── test-ft_table.R │ ├── test-ftd_doi.R │ ├── test-ftd_members.R │ └── test-ftd_prefixes.R └── vignettes ├── formats.Rmd ├── fulltext.Rmd ├── fulltext.Rmd.og ├── getting_fulltext.Rmd └── getting_fulltext.Rmd.og /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci-archive/fulltext/HEAD/.Rbuildignore 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