├── .Rbuildignore ├── .github ├── .gitignore ├── CONTRIBUTING.md └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ ├── pr-commands.yaml │ ├── rhub.yaml │ └── test-coverage.yaml ├── .gitignore ├── .zenodo.json ├── CRAN-SUBMISSION ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── aorsf-package.R ├── bibentries.R ├── check.R ├── coerce_nans.R ├── collapse_misc.R ├── data-pbc_orsf.R ├── data-penguins_orsf.R ├── fctr.R ├── infer.R ├── melt_aorsf.R ├── misc.R ├── oobag_c_survival.R ├── orsf.R ├── orsf_R6.R ├── orsf_control.R ├── orsf_data_prep.R ├── orsf_interaction.R ├── orsf_pd.R ├── orsf_predict.R ├── orsf_print.R ├── orsf_scale_cph.R ├── orsf_summary.R ├── orsf_update.R ├── orsf_vi.R ├── orsf_vint.R ├── orsf_vs.R ├── penalized_cph.R ├── prep_x.R ├── prep_y.R ├── ref_code.R ├── round_magnitude.R ├── roxy.R └── unit_info.R ├── README.Rmd ├── README.md ├── Rmd ├── orsf-fit-clsf-train-test.Rmd ├── orsf-fit-intro.Rmd ├── orsf-fit-regr-train-test.Rmd ├── orsf-fit-surv-train-test.Rmd ├── orsf_comparisons.Rmd ├── orsf_control_examples.Rmd ├── orsf_examples.Rmd ├── orsf_examples_mlr3.Rmd ├── orsf_ice_content.Rmd ├── orsf_ice_examples.Rmd ├── orsf_pd_content.Rmd ├── orsf_pd_examples.Rmd ├── orsf_predict_examples.Rmd └── orsf_vi_examples.Rmd ├── _pkgdown.yml ├── aorsf.Rproj ├── cache ├── __packages ├── unnamed-chunk-10_b88536be38dd9177451741c416efabd4.RData ├── unnamed-chunk-10_b88536be38dd9177451741c416efabd4.rdb ├── unnamed-chunk-10_b88536be38dd9177451741c416efabd4.rdx ├── unnamed-chunk-11_18b35ee22cfdd25980e8ba611ed87420.RData ├── unnamed-chunk-11_18b35ee22cfdd25980e8ba611ed87420.rdb ├── unnamed-chunk-11_18b35ee22cfdd25980e8ba611ed87420.rdx ├── unnamed-chunk-12_440474b94a7ed9559ac0ec69a1f18028.RData ├── unnamed-chunk-12_440474b94a7ed9559ac0ec69a1f18028.rdb ├── unnamed-chunk-12_440474b94a7ed9559ac0ec69a1f18028.rdx ├── unnamed-chunk-13_bfcacf418a09cbba03e15dc4d1756874.RData ├── 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unnamed-chunk-9_b8d54e7ed17d418cd97b2700725d9346.rdb └── unnamed-chunk-9_b8d54e7ed17d418cd97b2700725d9346.rdx ├── codecov.yml ├── codemeta.json ├── cran-comments.md ├── data-raw ├── pbc_orsf.R └── penguins_orsf.R ├── data ├── pbc_orsf.rda └── penguins_orsf.rda ├── inst └── CITATION ├── joss ├── apa.csl ├── paper.Rmd ├── paper.bib ├── paper.log ├── paper.md ├── paper.pdf ├── paper_cache │ └── latex │ │ ├── __packages │ │ ├── unnamed-chunk-1_9a428743810c442600250aac94a6f7e9.RData │ │ ├── unnamed-chunk-1_9a428743810c442600250aac94a6f7e9.rdb │ │ └── unnamed-chunk-1_9a428743810c442600250aac94a6f7e9.rdx ├── paper_files │ └── figure-latex │ │ ├── unnamed-chunk-1-1.pdf │ │ └── unnamed-chunk-2-1.pdf └── tree_axis_v_oblique.png ├── logo.png ├── man ├── aorsf-package.Rd ├── as.data.table.orsf_summary_uni.Rd ├── figures │ ├── README-unnamed-chunk-5-1.png │ ├── README-unnamed-chunk-6-1.png │ ├── README-unnamed-chunk-7-1.png │ ├── README-unnamed-chunk-8-1.png │ ├── README-unnamed-chunk-9-1.png │ ├── lifecycle-archived.svg │ ├── lifecycle-defunct.svg │ ├── lifecycle-deprecated.svg │ ├── lifecycle-experimental.svg │ ├── lifecycle-maturing.svg │ ├── lifecycle-questioning.svg │ ├── lifecycle-soft-deprecated.svg │ ├── lifecycle-stable.svg │ ├── lifecycle-superseded.svg │ ├── logo.png │ ├── tree_axis_v_oblique.png │ ├── unnamed-chunk-12-1.png │ ├── unnamed-chunk-13-1.png │ ├── unnamed-chunk-14-1.png │ └── unnamed-chunk-15-1.png ├── orsf.Rd ├── orsf_control.Rd ├── orsf_control_cph.Rd ├── orsf_control_custom.Rd ├── orsf_control_fast.Rd ├── orsf_control_net.Rd ├── orsf_ice_oob.Rd ├── orsf_pd_oob.Rd ├── orsf_scale_cph.Rd ├── orsf_summarize_uni.Rd ├── orsf_time_to_train.Rd ├── orsf_update.Rd ├── orsf_vi.Rd ├── orsf_vint.Rd ├── orsf_vs.Rd ├── pbc_orsf.Rd ├── penguins_orsf.Rd ├── pred_spec_auto.Rd ├── predict.ObliqueForest.Rd ├── print.ObliqueForest.Rd ├── print.orsf_summary_uni.Rd └── roxygen │ └── meta.R ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── src ├── .gitignore ├── AAA_check_cpp_version.cpp ├── Coxph.cpp ├── Coxph.h ├── Data.h ├── Forest.cpp ├── Forest.h ├── ForestClassification.cpp ├── ForestClassification.h ├── ForestRegression.cpp ├── ForestRegression.h ├── ForestSurvival.cpp ├── ForestSurvival.h ├── Makevars ├── Makevars.ucrt ├── Makevars.win ├── RcppExports.cpp ├── Tree.cpp ├── Tree.h ├── TreeClassification.cpp ├── TreeClassification.h ├── TreeRegression.cpp ├── TreeRegression.h ├── TreeSurvival.cpp ├── TreeSurvival.h ├── globals.h ├── orsf_oop.cpp ├── utility.cpp └── utility.h ├── tests ├── testthat.R └── testthat │ ├── _snaps │ └── verbosity.md │ ├── helper-orsf.R │ ├── setup.R │ ├── test-DataCpp.R │ ├── test-check.R │ ├── test-compute-gini.R │ ├── test-compute_cstat.R │ ├── test-compute_logrank.R │ ├── test-compute_pred_prob.R │ ├── test-compute_var_reduction.R │ ├── test-expand_y_clsf.R │ ├── test-fctr.R │ ├── test-find_cutpoints.R │ ├── test-find_rows_inbag.R │ ├── test-impute_meanmode.R │ ├── test-infer.R │ ├── test-is_col_splittable.R │ ├── test-lincomb_coxph.R │ ├── test-lincomb_linreg.R │ ├── test-lincomb_logreg.R │ ├── test-misc.R │ ├── test-na_action.R │ ├── test-orsf.R │ ├── test-orsf_control.R │ ├── test-orsf_formula.R │ ├── test-orsf_interaction.R │ ├── test-orsf_pd.R │ ├── test-orsf_predict.R │ ├── test-orsf_print.R │ ├── test-orsf_scale_x.R │ ├── test-orsf_summary.R │ ├── test-orsf_train.R │ ├── test-orsf_update.R │ ├── test-orsf_vi.R │ ├── test-orsf_vint.R │ ├── test-orsf_vs.R │ ├── test-orsf_weights.R │ ├── test-performance.R │ ├── test-ref_code.R │ ├── test-scale_x.R │ ├── test-sprout_node.R │ ├── test-unit_info.R │ └── test-verbosity.R └── vignettes ├── .gitignore ├── aorsf.Rmd ├── fast.Rmd ├── oobag.Rmd └── pd.Rmd /.Rbuildignore: 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