├── .Rbuildignore ├── .github ├── .gitignore ├── CONTRIBUTING.md ├── issue_template.md ├── pull_request_template.md └── workflows │ └── check-standard.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── DESCRIPTION ├── LICENSE ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── brranching-package.R ├── globals.R ├── helpers.R ├── phylomatic.R ├── phylomatic_local.R ├── phylomatic_names.R ├── rbladj.R └── zzz.R ├── README.Rmd ├── README.md ├── codemeta.json ├── cran-comments.md ├── data ├── phylomatic_trees.rda └── tpl.rda ├── inst ├── ignore │ ├── phylomatic_local.R │ ├── phylomedb.R │ ├── rbladj_old.R │ ├── tol.R │ └── tolweb.R └── vign │ ├── brranching.Rmd │ ├── brranching.md │ └── figure │ ├── unnamed-chunk-5-1.png │ ├── unnamed-chunk-6-1.png │ └── unnamed-chunk-7-1.png ├── man ├── brranching-package.Rd ├── phylomatic.Rd ├── phylomatic_local.Rd ├── phylomatic_names.Rd ├── phylomatic_trees.Rd ├── rbladj.Rd └── tpl.Rd ├── tests ├── test-all.R └── testthat │ ├── test-phylomatic.R │ ├── test-phylomatic_local.R │ └── test-phylomatic_names.R ├── tools └── img │ ├── unnamed-chunk-5-1.png │ ├── unnamed-chunk-6-1.png │ └── unnamed-chunk-7-1.png └── vignettes ├── brranching.Rmd └── figure ├── unnamed-chunk-5-1.png ├── unnamed-chunk-6-1.png └── unnamed-chunk-7-1.png /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/brranching/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/brranching/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- 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