├── .Rbuildignore ├── .github ├── .gitignore ├── CONTRIBUTING.md └── workflows │ ├── R-CMD-check.yaml │ └── test-coverage.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── aggregate_data.R ├── aggregation_functions.R ├── daiquiri-package.R ├── field_types.R ├── main.R ├── reports.R ├── source_data.R ├── utilities.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── codemeta.json ├── daiquiri.Rproj ├── devtesting ├── changedetectiontesting.R └── testoutput │ └── .gitignore ├── docs ├── 404.html ├── CONTRIBUTING.html ├── LICENSE.html ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── articles │ │ ├── example_report.html │ │ └── example_report_stratified.html │ ├── daiquiri.html │ ├── example_prescriptions.html │ ├── example_prescriptions_stratified.html │ ├── example_report.html │ ├── example_report_stratified.html │ └── index.html ├── authors.html ├── deps │ ├── bootstrap-5.1.3 │ │ ├── bootstrap.bundle.min.js │ │ ├── bootstrap.bundle.min.js.map │ │ └── bootstrap.min.css │ ├── bootstrap-5.3.1 │ │ ├── bootstrap.bundle.min.js │ │ ├── bootstrap.bundle.min.js.map │ │ └── bootstrap.min.css │ ├── bootstrap-toc-1.0.1 │ │ └── bootstrap-toc.min.js │ ├── clipboard.js-2.0.11 │ │ └── clipboard.min.js │ ├── data-deps.txt │ ├── font-awesome-6.4.0 │ │ ├── css │ │ │ ├── all.css │ │ │ ├── all.min.css │ │ │ ├── v4-shims.css │ │ │ └── v4-shims.min.css │ │ └── webfonts │ │ │ ├── fa-brands-400.ttf │ │ │ ├── fa-brands-400.woff2 │ │ │ ├── fa-regular-400.ttf │ │ │ ├── fa-regular-400.woff2 │ │ │ ├── fa-solid-900.ttf │ │ │ ├── fa-solid-900.woff2 │ │ │ ├── fa-v4compatibility.ttf │ │ │ └── fa-v4compatibility.woff2 │ ├── font-awesome-6.5.2 │ │ ├── css │ │ │ ├── all.css │ │ │ ├── all.min.css │ │ │ ├── v4-shims.css │ │ │ └── v4-shims.min.css │ │ └── webfonts │ │ │ ├── fa-brands-400.ttf │ │ │ ├── fa-brands-400.woff2 │ │ │ ├── fa-regular-400.ttf │ │ │ ├── fa-regular-400.woff2 │ │ │ ├── fa-solid-900.ttf │ │ │ ├── fa-solid-900.woff2 │ │ │ ├── fa-v4compatibility.ttf │ │ │ └── fa-v4compatibility.woff2 │ ├── headroom-0.11.0 │ │ ├── headroom.min.js │ │ └── jQuery.headroom.min.js │ ├── jquery-3.6.0 │ │ ├── jquery-3.6.0.js │ │ ├── jquery-3.6.0.min.js │ │ └── jquery-3.6.0.min.map │ └── search-1.0.0 │ │ ├── autocomplete.jquery.min.js │ │ ├── fuse.min.js │ │ └── mark.min.js ├── dev │ ├── .nojekyll │ ├── CONTRIBUTING.html │ ├── LICENSE.html │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── articles │ │ ├── articles │ │ │ ├── example_report.html │ │ │ └── example_report_stratified.html │ │ ├── daiquiri.html │ │ ├── example_report.html │ │ ├── example_report_stratified.html │ │ └── index.html │ ├── authors.html │ ├── deps │ │ ├── bootstrap-5.1.3 │ │ │ ├── bootstrap.bundle.min.js │ │ │ ├── bootstrap.bundle.min.js.map │ │ │ └── bootstrap.min.css │ │ ├── bootstrap-5.3.1 │ │ │ ├── bootstrap.bundle.min.js │ │ │ ├── bootstrap.bundle.min.js.map │ │ │ └── bootstrap.min.css │ │ ├── bootstrap-toc-1.0.1 │ │ │ └── bootstrap-toc.min.js │ │ ├── clipboard.js-2.0.11 │ │ │ └── clipboard.min.js │ │ ├── data-deps.txt │ │ ├── font-awesome-6.5.2 │ │ │ ├── css │ │ │ │ ├── all.css │ │ │ │ ├── all.min.css │ │ │ │ ├── v4-shims.css │ │ │ │ └── v4-shims.min.css │ │ │ └── webfonts │ │ │ │ ├── fa-brands-400.ttf │ │ │ │ ├── fa-brands-400.woff2 │ │ │ │ ├── fa-regular-400.ttf │ │ │ │ ├── fa-regular-400.woff2 │ │ │ │ ├── fa-solid-900.ttf │ │ │ │ ├── fa-solid-900.woff2 │ │ │ │ ├── fa-v4compatibility.ttf │ │ │ │ └── fa-v4compatibility.woff2 │ │ ├── headroom-0.11.0 │ │ │ ├── headroom.min.js │ │ │ └── jQuery.headroom.min.js │ │ ├── jquery-3.6.0 │ │ │ ├── jquery-3.6.0.js │ │ │ ├── jquery-3.6.0.min.js │ │ │ └── jquery-3.6.0.min.map │ │ └── search-1.0.0 │ │ │ ├── autocomplete.jquery.min.js │ │ │ ├── fuse.min.js │ │ │ └── mark.min.js │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── index.html │ ├── katex-auto.js │ ├── lightswitch.js │ ├── link.svg │ ├── logo.png │ ├── news │ │ └── index.html │ ├── pkgdown.js │ ├── pkgdown.yml │ ├── reference │ │ ├── Rplot001.png │ │ ├── aggregate_data.html │ │ ├── close_log.html │ │ ├── daiquiri-package.html │ │ ├── daiquiri.html │ │ ├── daiquiri_report.html │ │ ├── export_aggregated_data.html │ │ ├── field_types.html │ │ ├── field_types_advanced.html │ │ ├── field_types_available.html │ │ ├── figures │ │ │ ├── antibiotics_day_DurationEnteredByPrescriber_missing_perc.png │ │ │ ├── bchem_creatinine_day_Value_mean.png │ │ │ ├── example_prescriptions_aggregated_valuespresent.png │ │ │ ├── example_prescriptions_allfields_missing_perc.png │ │ │ ├── example_prescriptions_head.png │ │ │ ├── example_prescriptions_source_fieldsimported.png │ │ │ ├── example_prescriptions_stratified_midnight_perc.png │ │ │ ├── example_prescriptions_stratified_strata.png │ │ │ └── logo.png │ │ ├── ft_categorical.html │ │ ├── ft_datetime.html │ │ ├── ft_freetext.html │ │ ├── ft_ignore.html │ │ ├── ft_numeric.html │ │ ├── ft_simple.html │ │ ├── ft_strata.html │ │ ├── ft_timepoint.html │ │ ├── ft_uniqueidentifier.html │ │ ├── index.html │ │ ├── initialise_log.html │ │ ├── prepare_data.html │ │ ├── read_data.html │ │ ├── report_data.html │ │ └── template_field_types.html │ ├── search.json │ ├── site.webmanifest │ ├── sitemap.xml │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon-96x96.png ├── favicon.ico ├── favicon.svg ├── index.html ├── katex-auto.js ├── lightswitch.js ├── link.svg ├── logo.png ├── news │ └── index.html ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── Rplot001.png │ ├── aggregate_data.html │ ├── close_log.html │ ├── daiquiri-package.html │ ├── daiquiri.html │ ├── daiquiri_report.html │ ├── export_aggregated_data.html │ ├── field_types.html │ ├── field_types_advanced.html │ ├── field_types_available.html │ ├── figures │ │ ├── antibiotics_day_DurationEnteredByPrescriber_missing_perc.png │ │ ├── bchem_creatinine_day_Value_mean.png │ │ ├── example_prescriptions_aggregated_valuespresent.png │ │ ├── example_prescriptions_allfields_missing_perc.png │ │ ├── example_prescriptions_head.png │ │ ├── example_prescriptions_source_fieldsimported.png │ │ ├── example_prescriptions_stratified_midnight_perc.png │ │ ├── example_prescriptions_stratified_strata.png │ │ └── logo.png │ ├── ft_categorical.html │ ├── ft_datetime.html │ ├── ft_freetext.html │ ├── ft_ignore.html │ ├── ft_numeric.html │ ├── ft_simple.html │ ├── ft_strata.html │ ├── ft_timepoint.html │ ├── ft_uniqueidentifier.html │ ├── index.html │ ├── initialise_log.html │ ├── prepare_data.html │ ├── read_data.html │ ├── report_data.html │ └── template_field_types.html ├── search.json ├── site.webmanifest ├── sitemap.xml ├── web-app-manifest-192x192.png └── web-app-manifest-512x512.png ├── inst ├── CITATION ├── extdata │ └── example_prescriptions.csv └── rmd │ ├── logo.png │ └── report_htmldoc.Rmd ├── man ├── aggregate_data.Rd ├── close_log.Rd ├── daiquiri-package.Rd ├── daiquiri_report.Rd ├── export_aggregated_data.Rd ├── field_types.Rd ├── field_types_advanced.Rd ├── field_types_available.Rd ├── figures │ ├── antibiotics_day_DurationEnteredByPrescriber_missing_perc.png │ ├── bchem_creatinine_day_Value_mean.png │ ├── example_prescriptions_aggregated_valuespresent.png │ ├── example_prescriptions_allfields_missing_perc.png │ ├── example_prescriptions_head.png │ ├── example_prescriptions_source_fieldsimported.png │ ├── example_prescriptions_stratified_midnight_perc.png │ ├── example_prescriptions_stratified_strata.png │ └── logo.png ├── initialise_log.Rd ├── prepare_data.Rd ├── read_data.Rd ├── report_data.Rd └── template_field_types.Rd ├── paper ├── bchem_creatinine_day_Value_mean.png ├── example_prescriptions_admdate_missing_perc.png ├── example_prescriptions_aggregated_valuespresent.png ├── example_prescriptions_head.png ├── paper.bib └── paper.md ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── renv.lock ├── renv ├── .gitignore ├── activate.R └── settings.dcf ├── tests ├── testthat.R └── testthat │ ├── _snaps │ ├── aggregate_data.md │ ├── aggregate_data │ │ ├── test_[ALL_FIELDS_COMBINED].csv │ │ ├── test_[DUPLICATES].csv │ │ ├── test_col1.csv │ │ └── test_col2.csv │ ├── field_types.md │ ├── main.md │ ├── reports │ │ ├── plot-overview-combo-static.svg │ │ ├── plot-overview-heatmap-static.svg │ │ ├── plot-overview-totals-static-empty.svg │ │ ├── plot-overview-totals-static.svg │ │ ├── plot-stratified-combo-static.svg │ │ ├── plot-stratified-facetgrid-static.svg │ │ ├── plot-stratified-totals-static.svg │ │ ├── plot-subcat-heatmap-static.svg │ │ ├── plot-timeseries-static-empty.svg │ │ └── plot-timeseries-static.svg │ └── source_data.md │ ├── test-aggregate_data.R │ ├── test-aggregation_functions.R │ ├── test-field_types.R │ ├── test-main.R │ ├── test-reports.R │ ├── test-source_data.R │ ├── test-utilities.R │ └── testdata │ ├── completetestset.csv │ ├── completetestset.xlsx │ ├── specialchars_colnames.csv │ └── specialchars_excel.csv └── vignettes ├── .gitignore ├── articles ├── example_report.Rmd └── example_report_stratified.Rmd └── daiquiri.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.github/workflows/test-coverage.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/.github/workflows/test-coverage.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/LICENSE.md -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/NEWS.md -------------------------------------------------------------------------------- /R/aggregate_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/aggregate_data.R -------------------------------------------------------------------------------- /R/aggregation_functions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/aggregation_functions.R -------------------------------------------------------------------------------- /R/daiquiri-package.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/daiquiri-package.R -------------------------------------------------------------------------------- /R/field_types.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/field_types.R -------------------------------------------------------------------------------- /R/main.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/main.R -------------------------------------------------------------------------------- /R/reports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/reports.R -------------------------------------------------------------------------------- /R/source_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/source_data.R -------------------------------------------------------------------------------- /R/utilities.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/utilities.R -------------------------------------------------------------------------------- /R/zzz.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/R/zzz.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/README.md -------------------------------------------------------------------------------- /_pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/_pkgdown.yml -------------------------------------------------------------------------------- /codecov.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/codecov.yml -------------------------------------------------------------------------------- /codemeta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/codemeta.json -------------------------------------------------------------------------------- /daiquiri.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/daiquiri.Rproj -------------------------------------------------------------------------------- /devtesting/changedetectiontesting.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/devtesting/changedetectiontesting.R -------------------------------------------------------------------------------- /devtesting/testoutput/.gitignore: -------------------------------------------------------------------------------- 1 | * 2 | -------------------------------------------------------------------------------- /docs/404.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/404.html -------------------------------------------------------------------------------- /docs/CONTRIBUTING.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/CONTRIBUTING.html -------------------------------------------------------------------------------- /docs/LICENSE.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/LICENSE.html -------------------------------------------------------------------------------- /docs/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /docs/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /docs/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/apple-touch-icon.png -------------------------------------------------------------------------------- /docs/articles/articles/example_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/articles/example_report.html -------------------------------------------------------------------------------- /docs/articles/articles/example_report_stratified.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/articles/example_report_stratified.html -------------------------------------------------------------------------------- /docs/articles/daiquiri.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/daiquiri.html -------------------------------------------------------------------------------- /docs/articles/example_prescriptions.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/example_prescriptions.html -------------------------------------------------------------------------------- /docs/articles/example_prescriptions_stratified.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/example_prescriptions_stratified.html -------------------------------------------------------------------------------- /docs/articles/example_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/example_report.html -------------------------------------------------------------------------------- /docs/articles/example_report_stratified.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/example_report_stratified.html -------------------------------------------------------------------------------- /docs/articles/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/articles/index.html -------------------------------------------------------------------------------- /docs/authors.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/authors.html -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.1.3/bootstrap.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.1.3/bootstrap.min.css -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map -------------------------------------------------------------------------------- /docs/deps/bootstrap-5.3.1/bootstrap.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-5.3.1/bootstrap.min.css -------------------------------------------------------------------------------- /docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js -------------------------------------------------------------------------------- /docs/deps/clipboard.js-2.0.11/clipboard.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/clipboard.js-2.0.11/clipboard.min.js -------------------------------------------------------------------------------- /docs/deps/data-deps.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/data-deps.txt -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/css/all.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/css/all.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/css/all.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/css/all.min.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/css/v4-shims.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/css/v4-shims.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/css/v4-shims.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/css/v4-shims.min.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-brands-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-brands-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-brands-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-brands-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-regular-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-regular-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-regular-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-regular-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-solid-900.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-solid-900.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-solid-900.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-solid-900.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-v4compatibility.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-v4compatibility.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.4.0/webfonts/fa-v4compatibility.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.4.0/webfonts/fa-v4compatibility.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/css/all.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/css/all.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/css/all.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/css/all.min.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/css/v4-shims.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/css/v4-shims.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/css/v4-shims.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/css/v4-shims.min.css -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2 -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf -------------------------------------------------------------------------------- /docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2 -------------------------------------------------------------------------------- /docs/deps/headroom-0.11.0/headroom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/headroom-0.11.0/headroom.min.js -------------------------------------------------------------------------------- /docs/deps/headroom-0.11.0/jQuery.headroom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/headroom-0.11.0/jQuery.headroom.min.js -------------------------------------------------------------------------------- /docs/deps/jquery-3.6.0/jquery-3.6.0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/jquery-3.6.0/jquery-3.6.0.js -------------------------------------------------------------------------------- /docs/deps/jquery-3.6.0/jquery-3.6.0.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/jquery-3.6.0/jquery-3.6.0.min.js -------------------------------------------------------------------------------- /docs/deps/jquery-3.6.0/jquery-3.6.0.min.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/jquery-3.6.0/jquery-3.6.0.min.map -------------------------------------------------------------------------------- /docs/deps/search-1.0.0/autocomplete.jquery.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/search-1.0.0/autocomplete.jquery.min.js -------------------------------------------------------------------------------- /docs/deps/search-1.0.0/fuse.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/search-1.0.0/fuse.min.js -------------------------------------------------------------------------------- /docs/deps/search-1.0.0/mark.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/deps/search-1.0.0/mark.min.js -------------------------------------------------------------------------------- /docs/dev/.nojekyll: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /docs/dev/CONTRIBUTING.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/CONTRIBUTING.html -------------------------------------------------------------------------------- /docs/dev/LICENSE.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/LICENSE.html -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /docs/dev/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/apple-touch-icon.png -------------------------------------------------------------------------------- /docs/dev/articles/articles/example_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/articles/example_report.html -------------------------------------------------------------------------------- /docs/dev/articles/articles/example_report_stratified.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/articles/example_report_stratified.html -------------------------------------------------------------------------------- /docs/dev/articles/daiquiri.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/daiquiri.html -------------------------------------------------------------------------------- /docs/dev/articles/example_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/example_report.html -------------------------------------------------------------------------------- /docs/dev/articles/example_report_stratified.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/example_report_stratified.html -------------------------------------------------------------------------------- /docs/dev/articles/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/articles/index.html -------------------------------------------------------------------------------- /docs/dev/authors.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/authors.html -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.1.3/bootstrap.bundle.min.js.map -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.1.3/bootstrap.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.1.3/bootstrap.min.css -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.3.1/bootstrap.bundle.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.3.1/bootstrap.bundle.min.js -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-5.3.1/bootstrap.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-5.3.1/bootstrap.min.css -------------------------------------------------------------------------------- /docs/dev/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js -------------------------------------------------------------------------------- /docs/dev/deps/clipboard.js-2.0.11/clipboard.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/clipboard.js-2.0.11/clipboard.min.js -------------------------------------------------------------------------------- /docs/dev/deps/data-deps.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/data-deps.txt -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/css/all.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/css/all.css -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/css/all.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/css/all.min.css -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/css/v4-shims.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/css/v4-shims.css -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/css/v4-shims.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/css/v4-shims.min.css -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2 -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2 -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2 -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf -------------------------------------------------------------------------------- /docs/dev/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2 -------------------------------------------------------------------------------- /docs/dev/deps/headroom-0.11.0/headroom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/headroom-0.11.0/headroom.min.js -------------------------------------------------------------------------------- /docs/dev/deps/headroom-0.11.0/jQuery.headroom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/headroom-0.11.0/jQuery.headroom.min.js -------------------------------------------------------------------------------- /docs/dev/deps/jquery-3.6.0/jquery-3.6.0.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/jquery-3.6.0/jquery-3.6.0.js -------------------------------------------------------------------------------- /docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.js -------------------------------------------------------------------------------- /docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.map: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/jquery-3.6.0/jquery-3.6.0.min.map -------------------------------------------------------------------------------- /docs/dev/deps/search-1.0.0/autocomplete.jquery.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/search-1.0.0/autocomplete.jquery.min.js -------------------------------------------------------------------------------- /docs/dev/deps/search-1.0.0/fuse.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/search-1.0.0/fuse.min.js -------------------------------------------------------------------------------- /docs/dev/deps/search-1.0.0/mark.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/deps/search-1.0.0/mark.min.js -------------------------------------------------------------------------------- /docs/dev/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/favicon-16x16.png -------------------------------------------------------------------------------- /docs/dev/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/favicon-32x32.png -------------------------------------------------------------------------------- /docs/dev/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/favicon-96x96.png -------------------------------------------------------------------------------- /docs/dev/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/favicon.ico -------------------------------------------------------------------------------- /docs/dev/favicon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/favicon.svg -------------------------------------------------------------------------------- /docs/dev/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/index.html -------------------------------------------------------------------------------- /docs/dev/katex-auto.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/katex-auto.js -------------------------------------------------------------------------------- /docs/dev/lightswitch.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/lightswitch.js -------------------------------------------------------------------------------- /docs/dev/link.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/link.svg -------------------------------------------------------------------------------- /docs/dev/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/logo.png -------------------------------------------------------------------------------- /docs/dev/news/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/news/index.html -------------------------------------------------------------------------------- /docs/dev/pkgdown.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/pkgdown.js -------------------------------------------------------------------------------- /docs/dev/pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/pkgdown.yml -------------------------------------------------------------------------------- /docs/dev/reference/Rplot001.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/Rplot001.png -------------------------------------------------------------------------------- /docs/dev/reference/aggregate_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/aggregate_data.html -------------------------------------------------------------------------------- /docs/dev/reference/close_log.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/close_log.html -------------------------------------------------------------------------------- /docs/dev/reference/daiquiri-package.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/daiquiri-package.html -------------------------------------------------------------------------------- /docs/dev/reference/daiquiri.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/daiquiri.html -------------------------------------------------------------------------------- /docs/dev/reference/daiquiri_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/daiquiri_report.html -------------------------------------------------------------------------------- /docs/dev/reference/export_aggregated_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/export_aggregated_data.html -------------------------------------------------------------------------------- /docs/dev/reference/field_types.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/field_types.html -------------------------------------------------------------------------------- /docs/dev/reference/field_types_advanced.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/field_types_advanced.html -------------------------------------------------------------------------------- /docs/dev/reference/field_types_available.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/field_types_available.html -------------------------------------------------------------------------------- /docs/dev/reference/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/bchem_creatinine_day_Value_mean.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/bchem_creatinine_day_Value_mean.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_aggregated_valuespresent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_aggregated_valuespresent.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_allfields_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_allfields_missing_perc.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_head.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_head.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_source_fieldsimported.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_source_fieldsimported.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_stratified_midnight_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_stratified_midnight_perc.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/example_prescriptions_stratified_strata.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/example_prescriptions_stratified_strata.png -------------------------------------------------------------------------------- /docs/dev/reference/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/figures/logo.png -------------------------------------------------------------------------------- /docs/dev/reference/ft_categorical.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_categorical.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_datetime.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_datetime.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_freetext.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_freetext.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_ignore.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_ignore.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_numeric.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_numeric.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_simple.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_simple.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_strata.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_strata.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_timepoint.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_timepoint.html -------------------------------------------------------------------------------- /docs/dev/reference/ft_uniqueidentifier.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/ft_uniqueidentifier.html -------------------------------------------------------------------------------- /docs/dev/reference/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/index.html -------------------------------------------------------------------------------- /docs/dev/reference/initialise_log.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/initialise_log.html -------------------------------------------------------------------------------- /docs/dev/reference/prepare_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/prepare_data.html -------------------------------------------------------------------------------- /docs/dev/reference/read_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/read_data.html -------------------------------------------------------------------------------- /docs/dev/reference/report_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/report_data.html -------------------------------------------------------------------------------- /docs/dev/reference/template_field_types.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/reference/template_field_types.html -------------------------------------------------------------------------------- /docs/dev/search.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/search.json -------------------------------------------------------------------------------- /docs/dev/site.webmanifest: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/site.webmanifest -------------------------------------------------------------------------------- /docs/dev/sitemap.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/sitemap.xml -------------------------------------------------------------------------------- /docs/dev/web-app-manifest-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/web-app-manifest-192x192.png -------------------------------------------------------------------------------- /docs/dev/web-app-manifest-512x512.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/dev/web-app-manifest-512x512.png -------------------------------------------------------------------------------- /docs/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/favicon-16x16.png -------------------------------------------------------------------------------- /docs/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/favicon-32x32.png -------------------------------------------------------------------------------- /docs/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/favicon-96x96.png -------------------------------------------------------------------------------- /docs/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/favicon.ico -------------------------------------------------------------------------------- /docs/favicon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/favicon.svg -------------------------------------------------------------------------------- /docs/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/index.html -------------------------------------------------------------------------------- /docs/katex-auto.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/katex-auto.js -------------------------------------------------------------------------------- /docs/lightswitch.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/lightswitch.js -------------------------------------------------------------------------------- /docs/link.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/link.svg -------------------------------------------------------------------------------- /docs/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/logo.png -------------------------------------------------------------------------------- /docs/news/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/news/index.html -------------------------------------------------------------------------------- /docs/pkgdown.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/pkgdown.js -------------------------------------------------------------------------------- /docs/pkgdown.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/pkgdown.yml -------------------------------------------------------------------------------- /docs/reference/Rplot001.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/Rplot001.png -------------------------------------------------------------------------------- /docs/reference/aggregate_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/aggregate_data.html -------------------------------------------------------------------------------- /docs/reference/close_log.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/close_log.html -------------------------------------------------------------------------------- /docs/reference/daiquiri-package.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/daiquiri-package.html -------------------------------------------------------------------------------- /docs/reference/daiquiri.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/daiquiri.html -------------------------------------------------------------------------------- /docs/reference/daiquiri_report.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/daiquiri_report.html -------------------------------------------------------------------------------- /docs/reference/export_aggregated_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/export_aggregated_data.html -------------------------------------------------------------------------------- /docs/reference/field_types.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/field_types.html -------------------------------------------------------------------------------- /docs/reference/field_types_advanced.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/field_types_advanced.html -------------------------------------------------------------------------------- /docs/reference/field_types_available.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/field_types_available.html -------------------------------------------------------------------------------- /docs/reference/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png -------------------------------------------------------------------------------- /docs/reference/figures/bchem_creatinine_day_Value_mean.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/bchem_creatinine_day_Value_mean.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_aggregated_valuespresent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_aggregated_valuespresent.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_allfields_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_allfields_missing_perc.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_head.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_head.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_source_fieldsimported.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_source_fieldsimported.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_stratified_midnight_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_stratified_midnight_perc.png -------------------------------------------------------------------------------- /docs/reference/figures/example_prescriptions_stratified_strata.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/example_prescriptions_stratified_strata.png -------------------------------------------------------------------------------- /docs/reference/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/figures/logo.png -------------------------------------------------------------------------------- /docs/reference/ft_categorical.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_categorical.html -------------------------------------------------------------------------------- /docs/reference/ft_datetime.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_datetime.html -------------------------------------------------------------------------------- /docs/reference/ft_freetext.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_freetext.html -------------------------------------------------------------------------------- /docs/reference/ft_ignore.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_ignore.html -------------------------------------------------------------------------------- /docs/reference/ft_numeric.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_numeric.html -------------------------------------------------------------------------------- /docs/reference/ft_simple.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_simple.html -------------------------------------------------------------------------------- /docs/reference/ft_strata.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_strata.html -------------------------------------------------------------------------------- /docs/reference/ft_timepoint.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_timepoint.html -------------------------------------------------------------------------------- /docs/reference/ft_uniqueidentifier.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/ft_uniqueidentifier.html -------------------------------------------------------------------------------- /docs/reference/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/index.html -------------------------------------------------------------------------------- /docs/reference/initialise_log.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/initialise_log.html -------------------------------------------------------------------------------- /docs/reference/prepare_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/prepare_data.html -------------------------------------------------------------------------------- /docs/reference/read_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/read_data.html -------------------------------------------------------------------------------- /docs/reference/report_data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/report_data.html -------------------------------------------------------------------------------- /docs/reference/template_field_types.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/reference/template_field_types.html -------------------------------------------------------------------------------- /docs/search.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/search.json -------------------------------------------------------------------------------- /docs/site.webmanifest: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/site.webmanifest -------------------------------------------------------------------------------- /docs/sitemap.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/sitemap.xml -------------------------------------------------------------------------------- /docs/web-app-manifest-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/web-app-manifest-192x192.png -------------------------------------------------------------------------------- /docs/web-app-manifest-512x512.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/docs/web-app-manifest-512x512.png -------------------------------------------------------------------------------- /inst/CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/inst/CITATION -------------------------------------------------------------------------------- /inst/extdata/example_prescriptions.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/inst/extdata/example_prescriptions.csv -------------------------------------------------------------------------------- /inst/rmd/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/inst/rmd/logo.png -------------------------------------------------------------------------------- /inst/rmd/report_htmldoc.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/inst/rmd/report_htmldoc.Rmd -------------------------------------------------------------------------------- /man/aggregate_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/aggregate_data.Rd -------------------------------------------------------------------------------- /man/close_log.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/close_log.Rd -------------------------------------------------------------------------------- /man/daiquiri-package.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/daiquiri-package.Rd -------------------------------------------------------------------------------- /man/daiquiri_report.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/daiquiri_report.Rd -------------------------------------------------------------------------------- /man/export_aggregated_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/export_aggregated_data.Rd -------------------------------------------------------------------------------- /man/field_types.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/field_types.Rd -------------------------------------------------------------------------------- /man/field_types_advanced.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/field_types_advanced.Rd -------------------------------------------------------------------------------- /man/field_types_available.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/field_types_available.Rd -------------------------------------------------------------------------------- /man/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/antibiotics_day_DurationEnteredByPrescriber_missing_perc.png -------------------------------------------------------------------------------- /man/figures/bchem_creatinine_day_Value_mean.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/bchem_creatinine_day_Value_mean.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_aggregated_valuespresent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_aggregated_valuespresent.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_allfields_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_allfields_missing_perc.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_head.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_head.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_source_fieldsimported.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_source_fieldsimported.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_stratified_midnight_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_stratified_midnight_perc.png -------------------------------------------------------------------------------- /man/figures/example_prescriptions_stratified_strata.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/example_prescriptions_stratified_strata.png -------------------------------------------------------------------------------- /man/figures/logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/figures/logo.png -------------------------------------------------------------------------------- /man/initialise_log.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/initialise_log.Rd -------------------------------------------------------------------------------- /man/prepare_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/prepare_data.Rd -------------------------------------------------------------------------------- /man/read_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/read_data.Rd -------------------------------------------------------------------------------- /man/report_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/report_data.Rd -------------------------------------------------------------------------------- /man/template_field_types.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/man/template_field_types.Rd -------------------------------------------------------------------------------- /paper/bchem_creatinine_day_Value_mean.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/bchem_creatinine_day_Value_mean.png -------------------------------------------------------------------------------- /paper/example_prescriptions_admdate_missing_perc.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/example_prescriptions_admdate_missing_perc.png -------------------------------------------------------------------------------- /paper/example_prescriptions_aggregated_valuespresent.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/example_prescriptions_aggregated_valuespresent.png -------------------------------------------------------------------------------- /paper/example_prescriptions_head.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/example_prescriptions_head.png -------------------------------------------------------------------------------- /paper/paper.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/paper.bib -------------------------------------------------------------------------------- /paper/paper.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/paper/paper.md -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon-120x120.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon-152x152.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon-180x180.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon-60x60.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon-76x76.png -------------------------------------------------------------------------------- /pkgdown/favicon/apple-touch-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/apple-touch-icon.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/favicon-96x96.png -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/favicon.ico -------------------------------------------------------------------------------- /pkgdown/favicon/favicon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/favicon.svg -------------------------------------------------------------------------------- /pkgdown/favicon/site.webmanifest: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/site.webmanifest -------------------------------------------------------------------------------- /pkgdown/favicon/web-app-manifest-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/web-app-manifest-192x192.png -------------------------------------------------------------------------------- /pkgdown/favicon/web-app-manifest-512x512.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/pkgdown/favicon/web-app-manifest-512x512.png -------------------------------------------------------------------------------- /renv.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/renv.lock -------------------------------------------------------------------------------- /renv/.gitignore: -------------------------------------------------------------------------------- 1 | library/ 2 | lock/ 3 | python/ 4 | staging/ 5 | -------------------------------------------------------------------------------- /renv/activate.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/renv/activate.R -------------------------------------------------------------------------------- /renv/settings.dcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/renv/settings.dcf -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/_snaps/aggregate_data.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/aggregate_data.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/aggregate_data/test_[ALL_FIELDS_COMBINED].csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/aggregate_data/test_[ALL_FIELDS_COMBINED].csv -------------------------------------------------------------------------------- /tests/testthat/_snaps/aggregate_data/test_[DUPLICATES].csv: -------------------------------------------------------------------------------- 1 | col1_byday,sum,nonzero_perc 2 | 2022-01-01,4,100 3 | -------------------------------------------------------------------------------- /tests/testthat/_snaps/aggregate_data/test_col1.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/aggregate_data/test_col1.csv -------------------------------------------------------------------------------- /tests/testthat/_snaps/aggregate_data/test_col2.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/aggregate_data/test_col2.csv -------------------------------------------------------------------------------- /tests/testthat/_snaps/field_types.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/field_types.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/main.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/main.md -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-overview-combo-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-overview-combo-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-overview-heatmap-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-overview-heatmap-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-overview-totals-static-empty.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-overview-totals-static-empty.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-overview-totals-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-overview-totals-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-stratified-combo-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-stratified-combo-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-stratified-facetgrid-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-stratified-facetgrid-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-stratified-totals-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-stratified-totals-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-subcat-heatmap-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-subcat-heatmap-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-timeseries-static-empty.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-timeseries-static-empty.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/reports/plot-timeseries-static.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/reports/plot-timeseries-static.svg -------------------------------------------------------------------------------- /tests/testthat/_snaps/source_data.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/_snaps/source_data.md -------------------------------------------------------------------------------- /tests/testthat/test-aggregate_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-aggregate_data.R -------------------------------------------------------------------------------- /tests/testthat/test-aggregation_functions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-aggregation_functions.R -------------------------------------------------------------------------------- /tests/testthat/test-field_types.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-field_types.R -------------------------------------------------------------------------------- /tests/testthat/test-main.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-main.R -------------------------------------------------------------------------------- /tests/testthat/test-reports.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-reports.R -------------------------------------------------------------------------------- /tests/testthat/test-source_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-source_data.R -------------------------------------------------------------------------------- /tests/testthat/test-utilities.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/test-utilities.R -------------------------------------------------------------------------------- /tests/testthat/testdata/completetestset.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/testdata/completetestset.csv -------------------------------------------------------------------------------- /tests/testthat/testdata/completetestset.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/testdata/completetestset.xlsx -------------------------------------------------------------------------------- /tests/testthat/testdata/specialchars_colnames.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/testdata/specialchars_colnames.csv -------------------------------------------------------------------------------- /tests/testthat/testdata/specialchars_excel.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/tests/testthat/testdata/specialchars_excel.csv -------------------------------------------------------------------------------- /vignettes/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | *.R 3 | -------------------------------------------------------------------------------- /vignettes/articles/example_report.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/vignettes/articles/example_report.Rmd -------------------------------------------------------------------------------- /vignettes/articles/example_report_stratified.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/vignettes/articles/example_report_stratified.Rmd -------------------------------------------------------------------------------- /vignettes/daiquiri.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ropensci/daiquiri/HEAD/vignettes/daiquiri.Rmd --------------------------------------------------------------------------------