├── .Rbuildignore ├── .github ├── CONTRIBUTING.md ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── config.yml │ └── feature_request.md ├── pull_request_template.md └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── NEWS.md ├── R ├── LDSearch.R ├── allgensnp.R ├── allphenotypes.R ├── annotations.R ├── deprecated-defunct.R ├── download_users.R ├── fetch_genotypes.R ├── genotypes.R ├── ncbi_snp_api.R ├── phenotypes.R ├── phenotypes_byid.R ├── rsnps-package.R ├── users.R └── utils.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── appveyor.yml ├── codecov.yml ├── codemeta.json ├── cran-comments.md ├── inst └── ignore │ └── LDSearch_modified.R ├── man ├── LDSearch-defunct.Rd ├── NCBI_snp_query-defunct.Rd ├── NCBI_snp_query2-defunct.Rd ├── allgensnp.Rd ├── allphenotypes.Rd ├── annotations.Rd ├── download_users.Rd ├── fetch_genotypes.Rd ├── flip.Rd ├── genotypes.Rd ├── get_frequency.Rd ├── get_gene_names.Rd ├── get_placements.Rd ├── ld_search-defunct.Rd ├── ncbi_snp_query.Rd ├── phenotypes.Rd ├── phenotypes_byid.Rd ├── read_users.Rd ├── release_bullets.Rd ├── rsnps-defunct.Rd ├── rsnps-package.Rd ├── rsnpsCache.Rd ├── split_to_df.Rd ├── swap.Rd ├── tryget.Rd └── users.Rd ├── revdep ├── README.md ├── failures.md └── problems.md ├── tests ├── fixtures │ ├── allgensnp.yml │ ├── allgensnp_error.yml │ ├── allphenotypes.yml │ ├── allphenotypes_ADHD.yml │ ├── annotations.yml │ ├── annotations_error.yml │ ├── fetch_genotypes_error.yml │ ├── get_users_error.yml │ ├── users.yml │ └── users_badgateway.yml ├── test-all.R └── testthat │ ├── helper-vcr.R │ ├── test-allgensnp.R │ ├── test-allphenotypes.R │ ├── test-annotations.R │ ├── test-fetch_genotypes.R │ ├── test-genotypes.R │ ├── test-ncbi_snp_api.R │ ├── test-phenotypes.R │ ├── test-phenotypes_byid.R │ └── test-users.R └── vignettes ├── precompile.R ├── rsnps.Rmd └── rsnps.Rmd.orig /.Rbuildignore: 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