├── .Rbuildignore ├── .github ├── .gitignore ├── CONTRIBUTING.md └── workflows │ ├── R-CMD-check.yaml │ ├── draft-pdf.yml │ ├── fair-software.yml │ └── test-coverage.yaml ├── .gitignore ├── CITATION.cff ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── amp_melt_curve_functions.R ├── calculate_deltacq.R ├── calculate_efficiency.R ├── plate_functions.R ├── read_qpcr_data.R └── tidyqpcr-package.R ├── README.md ├── codecov.yml ├── codemeta.json ├── inst ├── CITATION └── extdata │ ├── Edward_qPCR_Nrd1_calibration_2019-02-02.txt.gz │ ├── Edward_qPCR_Nrd1_calibration_2019-02-02_Cq.txt.gz │ ├── Edward_qPCR_TxnInhibitors_HS_2018-06-15_plate1.txt.gz │ ├── Edward_qPCR_TxnInhibitors_HS_2018-06-15_plate1_Cq.txt.gz │ ├── Edward_qPCR_TxnInhibitors_HS_2018-06-15_plate2.txt.gz │ ├── Edward_qPCR_TxnInhibitors_HS_2018-06-15_plate2_Cq.txt.gz │ ├── Stuart_dAgr_glyS_spoVG_5S_individualWells_Cq.txt.gz │ └── Stuart_dAgr_glyS_spoVG_5S_individualWells_Cq_select.txt.gz ├── man ├── calculate_deltacq_bysampleid.Rd ├── calculate_deltadeltacq_bytargetid.Rd ├── calculate_drdt_plate.Rd ├── calculate_dydx.Rd ├── calculate_efficiency.Rd ├── calculate_efficiency_bytargetid.Rd ├── calculate_normvalue.Rd ├── create_blank_plate.Rd ├── create_colkey_4diln_2ctrl_in_24.Rd ├── create_colkey_6_in_24.Rd ├── create_colkey_6diln_2ctrl_in_24.Rd ├── create_rowkey_4_in_16.Rd ├── create_rowkey_8_in_16_plain.Rd ├── debaseline.Rd ├── display_plate.Rd ├── display_plate_qpcr.Rd ├── display_plate_value.Rd ├── label_plate_rowcol.Rd ├── make_row_names_echo1536.Rd ├── make_row_names_lc1536.Rd ├── read_lightcycler_1colour_cq.Rd ├── read_lightcycler_1colour_raw.Rd └── tidyqpcr-package.Rd ├── paper.bib ├── paper.md ├── tests ├── testthat.R └── testthat │ ├── test-amp_melt_curve_functions.R │ ├── test-calculate_deltacq.R │ ├── test-calculate_efficiency.R │ ├── test-plate_functions.R │ └── test-read_qpcr_data.R ├── tidyqpcr.Rproj └── vignettes ├── calibration_vignette.Rmd ├── 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