├── .DS_Store ├── .gitignore ├── AtlasStatMap.m ├── GPU_perm_test.m ├── README.md ├── TPM4mm.nii ├── bmp_blend.m ├── bmp_contrast.m ├── bmp_mexicanhat.m ├── bmp_onCenter_offSurround.m ├── bmp_scramble.m ├── bmp_sinewave_1d.m ├── bmp_sinewave_2d.m ├── bmp_unsharpmask.m ├── bmp_yuv.m ├── cleanup.m ├── cmap2lut.m ├── convert_ctp.m ├── dicm_sort.m ├── dilate_erode.m ├── disco_sm.png ├── extract.exe ├── extract_brain.m ├── extractlx32 ├── extractlx64 ├── extractosx ├── fiber_QA ├── fiberQA.m ├── fiberQA.mat └── readme.txt ├── fix_qform.m ├── fsl_temporal_filt.m ├── mni2fs_makegii.m ├── next_release ├── nii_cleanup1.m ├── nii_cleanup3.m ├── nii_cleanup5_batch.m ├── nii_delete.m ├── nii_newseg.m └── nii_norm_linear.m ├── nii_3dcheckerboard.m ├── nii_anat.m ├── nii_atlas2nii.m ├── nii_batch12old.m ├── nii_change_datatype.m ├── nii_cleanup5.m ├── nii_clipeven_old.m ├── nii_combine_mask.m ├── nii_complex2magPhase.m ├── nii_contiguous.m ├── nii_coord2spheres.m ├── nii_cropVolumes.m ├── nii_ctsmooth.m ├── nii_dice.m ├── nii_dilate.m ├── nii_dilate_outlines.m ├── nii_dilate_vox.m ├── nii_diploe.m ├── nii_dti2rgb.m ├── nii_dti_clean.m ├── nii_dtibatch.m ├── nii_enantiomorphic.m ├── nii_enat_norm.m ├── nii_extract.m ├── nii_fileparts.m ├── nii_fixnames.m ├── nii_fixslices.m ├── nii_flipap.m ├── nii_fliplr.m ├── nii_flipz.m ├── nii_fslflirt.m ├── nii_fslver.m ├── nii_getTR.m ├── nii_gui.m ├── nii_i3m2nii.m ├── nii_isSPM12orNewer.m ├── nii_jaccard.m ├── nii_label.m ├── nii_loadhdrimg.m ├── nii_lpi.m ├── nii_make3d.m ├── nii_make3d_new.m ├── nii_make4d.m ├── nii_makeDTI.m ├── nii_makeseed.m ├── nii_mask.m ├── nii_meanBvec.m ├── nii_mean_stdev.m ├── nii_mean_stdev_roi.m ├── nii_merge.m ├── nii_merge_dki.m ├── nii_merge_dki2k.m ├── nii_merge_dki2k.m~ ├── nii_merge_dti.m ├── nii_mricro_roi2nii.m ├── nii_nanzero.m ├── nii_neper.m ├── nii_new.m ├── nii_nii2bvox.m ├── nii_nii2gii.m ├── nii_nii2objMesh.m ├── nii_nii2powerOf2.m ├── nii_nii2stl.m ├── nii_nii2voi.m ├── nii_nodz2node.m ├── nii_orderBval.m ├── nii_p2z.m ├── nii_pasl.m ├── nii_plotBvec.m ├── nii_qa_moco.m ├── nii_remove_haze.m ├── nii_render.m ├── nii_reorient.m ├── nii_rescue_par.m ├── nii_reslice1mm.m ├── nii_reslice2mm.m ├── nii_reslice_target.m ├── nii_reslice_target_thresh.m ├── nii_rgb_planar2packed.m ├── nii_savehdrimg.m ├── nii_scale_dims.m ├── nii_segment4d.m ├── nii_setOrigin.m ├── nii_setOrigin12x.m ├── nii_sform.m ├── nii_sqr_matrix.m ├── nii_subtract_mask.m ├── nii_swaphdr.m ├── nii_thresh.m ├── nii_thresh_conjunction.m ├── nii_threshreslicecluster.m ├── nii_tiff2nii.m ├── nii_tight_crop.m ├── nii_timecourse_roi.m ├── nii_ungz.m ├── nii_unsharpmask.m ├── nii_voi2nii.m ├── nii_z2p.m ├── nii_zeronan.m ├── nii_zintensity.m ├── nii_zoneplate3d.m ├── old_setOrigin12.m ├── pepper.jpg ├── photo.png ├── png2nii.m ├── stat_dprime.m ├── t1_fieldstrength.m ├── t1_fieldstrength.m.txt ├── t1_tissue.m ├── t2_contrast.m ├── t2_fieldstrength.m ├── t2_tissue.m ├── test.txt ├── timeShift.m ├── tr_flipangle.m ├── tracktion └── voi2nii.m /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | -------------------------------------------------------------------------------- /AtlasStatMap.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/AtlasStatMap.m -------------------------------------------------------------------------------- /GPU_perm_test.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/GPU_perm_test.m -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/README.md -------------------------------------------------------------------------------- /TPM4mm.nii: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/TPM4mm.nii -------------------------------------------------------------------------------- /bmp_blend.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_blend.m -------------------------------------------------------------------------------- /bmp_contrast.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_contrast.m -------------------------------------------------------------------------------- /bmp_mexicanhat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_mexicanhat.m -------------------------------------------------------------------------------- /bmp_onCenter_offSurround.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_onCenter_offSurround.m -------------------------------------------------------------------------------- /bmp_scramble.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_scramble.m -------------------------------------------------------------------------------- /bmp_sinewave_1d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_sinewave_1d.m -------------------------------------------------------------------------------- /bmp_sinewave_2d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_sinewave_2d.m -------------------------------------------------------------------------------- /bmp_unsharpmask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_unsharpmask.m -------------------------------------------------------------------------------- /bmp_yuv.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/bmp_yuv.m -------------------------------------------------------------------------------- /cleanup.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/cleanup.m -------------------------------------------------------------------------------- /cmap2lut.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/cmap2lut.m -------------------------------------------------------------------------------- /convert_ctp.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/convert_ctp.m -------------------------------------------------------------------------------- /dicm_sort.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/dicm_sort.m -------------------------------------------------------------------------------- /dilate_erode.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/dilate_erode.m -------------------------------------------------------------------------------- /disco_sm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/disco_sm.png -------------------------------------------------------------------------------- /extract.exe: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/extract.exe -------------------------------------------------------------------------------- /extract_brain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/extract_brain.m -------------------------------------------------------------------------------- /extractlx32: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/extractlx32 -------------------------------------------------------------------------------- /extractlx64: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/extractlx64 -------------------------------------------------------------------------------- /extractosx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/extractosx -------------------------------------------------------------------------------- /fiber_QA/fiberQA.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/fiber_QA/fiberQA.m -------------------------------------------------------------------------------- /fiber_QA/fiberQA.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/fiber_QA/fiberQA.mat -------------------------------------------------------------------------------- /fiber_QA/readme.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/fiber_QA/readme.txt -------------------------------------------------------------------------------- /fix_qform.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/fix_qform.m -------------------------------------------------------------------------------- /fsl_temporal_filt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/fsl_temporal_filt.m -------------------------------------------------------------------------------- /mni2fs_makegii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/mni2fs_makegii.m -------------------------------------------------------------------------------- /next_release/nii_cleanup1.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_cleanup1.m -------------------------------------------------------------------------------- /next_release/nii_cleanup3.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_cleanup3.m -------------------------------------------------------------------------------- /next_release/nii_cleanup5_batch.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_cleanup5_batch.m -------------------------------------------------------------------------------- /next_release/nii_delete.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_delete.m -------------------------------------------------------------------------------- /next_release/nii_newseg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_newseg.m -------------------------------------------------------------------------------- /next_release/nii_norm_linear.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/next_release/nii_norm_linear.m -------------------------------------------------------------------------------- /nii_3dcheckerboard.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_3dcheckerboard.m -------------------------------------------------------------------------------- /nii_anat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_anat.m -------------------------------------------------------------------------------- /nii_atlas2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_atlas2nii.m -------------------------------------------------------------------------------- /nii_batch12old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_batch12old.m -------------------------------------------------------------------------------- /nii_change_datatype.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_change_datatype.m -------------------------------------------------------------------------------- /nii_cleanup5.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_cleanup5.m -------------------------------------------------------------------------------- /nii_clipeven_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_clipeven_old.m -------------------------------------------------------------------------------- /nii_combine_mask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_combine_mask.m -------------------------------------------------------------------------------- /nii_complex2magPhase.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_complex2magPhase.m -------------------------------------------------------------------------------- /nii_contiguous.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_contiguous.m -------------------------------------------------------------------------------- /nii_coord2spheres.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_coord2spheres.m -------------------------------------------------------------------------------- /nii_cropVolumes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_cropVolumes.m -------------------------------------------------------------------------------- /nii_ctsmooth.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_ctsmooth.m -------------------------------------------------------------------------------- /nii_dice.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dice.m -------------------------------------------------------------------------------- /nii_dilate.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dilate.m -------------------------------------------------------------------------------- /nii_dilate_outlines.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dilate_outlines.m -------------------------------------------------------------------------------- /nii_dilate_vox.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dilate_vox.m -------------------------------------------------------------------------------- /nii_diploe.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_diploe.m -------------------------------------------------------------------------------- /nii_dti2rgb.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dti2rgb.m -------------------------------------------------------------------------------- /nii_dti_clean.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dti_clean.m -------------------------------------------------------------------------------- /nii_dtibatch.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_dtibatch.m -------------------------------------------------------------------------------- /nii_enantiomorphic.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_enantiomorphic.m -------------------------------------------------------------------------------- /nii_enat_norm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_enat_norm.m -------------------------------------------------------------------------------- /nii_extract.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_extract.m -------------------------------------------------------------------------------- /nii_fileparts.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fileparts.m -------------------------------------------------------------------------------- /nii_fixnames.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fixnames.m -------------------------------------------------------------------------------- /nii_fixslices.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fixslices.m -------------------------------------------------------------------------------- /nii_flipap.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_flipap.m -------------------------------------------------------------------------------- /nii_fliplr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fliplr.m -------------------------------------------------------------------------------- /nii_flipz.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_flipz.m -------------------------------------------------------------------------------- /nii_fslflirt.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fslflirt.m -------------------------------------------------------------------------------- /nii_fslver.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_fslver.m -------------------------------------------------------------------------------- /nii_getTR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_getTR.m -------------------------------------------------------------------------------- /nii_gui.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_gui.m -------------------------------------------------------------------------------- /nii_i3m2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_i3m2nii.m -------------------------------------------------------------------------------- /nii_isSPM12orNewer.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_isSPM12orNewer.m -------------------------------------------------------------------------------- /nii_jaccard.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_jaccard.m -------------------------------------------------------------------------------- /nii_label.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_label.m -------------------------------------------------------------------------------- /nii_loadhdrimg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_loadhdrimg.m -------------------------------------------------------------------------------- /nii_lpi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_lpi.m -------------------------------------------------------------------------------- /nii_make3d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_make3d.m -------------------------------------------------------------------------------- /nii_make3d_new.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_make3d_new.m -------------------------------------------------------------------------------- /nii_make4d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_make4d.m -------------------------------------------------------------------------------- /nii_makeDTI.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_makeDTI.m -------------------------------------------------------------------------------- /nii_makeseed.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_makeseed.m -------------------------------------------------------------------------------- /nii_mask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_mask.m -------------------------------------------------------------------------------- /nii_meanBvec.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_meanBvec.m -------------------------------------------------------------------------------- /nii_mean_stdev.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_mean_stdev.m -------------------------------------------------------------------------------- /nii_mean_stdev_roi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_mean_stdev_roi.m -------------------------------------------------------------------------------- /nii_merge.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_merge.m -------------------------------------------------------------------------------- /nii_merge_dki.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_merge_dki.m -------------------------------------------------------------------------------- /nii_merge_dki2k.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_merge_dki2k.m -------------------------------------------------------------------------------- /nii_merge_dki2k.m~: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_merge_dki2k.m~ -------------------------------------------------------------------------------- /nii_merge_dti.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_merge_dti.m -------------------------------------------------------------------------------- /nii_mricro_roi2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_mricro_roi2nii.m -------------------------------------------------------------------------------- /nii_nanzero.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nanzero.m -------------------------------------------------------------------------------- /nii_neper.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_neper.m -------------------------------------------------------------------------------- /nii_new.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_new.m -------------------------------------------------------------------------------- /nii_nii2bvox.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2bvox.m -------------------------------------------------------------------------------- /nii_nii2gii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2gii.m -------------------------------------------------------------------------------- /nii_nii2objMesh.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2objMesh.m -------------------------------------------------------------------------------- /nii_nii2powerOf2.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2powerOf2.m -------------------------------------------------------------------------------- /nii_nii2stl.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2stl.m -------------------------------------------------------------------------------- /nii_nii2voi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nii2voi.m -------------------------------------------------------------------------------- /nii_nodz2node.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_nodz2node.m -------------------------------------------------------------------------------- /nii_orderBval.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_orderBval.m -------------------------------------------------------------------------------- /nii_p2z.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_p2z.m -------------------------------------------------------------------------------- /nii_pasl.m: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /nii_plotBvec.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_plotBvec.m -------------------------------------------------------------------------------- /nii_qa_moco.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_qa_moco.m -------------------------------------------------------------------------------- /nii_remove_haze.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_remove_haze.m -------------------------------------------------------------------------------- /nii_render.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_render.m -------------------------------------------------------------------------------- /nii_reorient.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_reorient.m -------------------------------------------------------------------------------- /nii_rescue_par.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_rescue_par.m -------------------------------------------------------------------------------- /nii_reslice1mm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_reslice1mm.m -------------------------------------------------------------------------------- /nii_reslice2mm.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_reslice2mm.m -------------------------------------------------------------------------------- /nii_reslice_target.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_reslice_target.m -------------------------------------------------------------------------------- /nii_reslice_target_thresh.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_reslice_target_thresh.m -------------------------------------------------------------------------------- /nii_rgb_planar2packed.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_rgb_planar2packed.m -------------------------------------------------------------------------------- /nii_savehdrimg.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_savehdrimg.m -------------------------------------------------------------------------------- /nii_scale_dims.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_scale_dims.m -------------------------------------------------------------------------------- /nii_segment4d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_segment4d.m -------------------------------------------------------------------------------- /nii_setOrigin.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_setOrigin.m -------------------------------------------------------------------------------- /nii_setOrigin12x.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_setOrigin12x.m -------------------------------------------------------------------------------- /nii_sform.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_sform.m -------------------------------------------------------------------------------- /nii_sqr_matrix.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_sqr_matrix.m -------------------------------------------------------------------------------- /nii_subtract_mask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_subtract_mask.m -------------------------------------------------------------------------------- /nii_swaphdr.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_swaphdr.m -------------------------------------------------------------------------------- /nii_thresh.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_thresh.m -------------------------------------------------------------------------------- /nii_thresh_conjunction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_thresh_conjunction.m -------------------------------------------------------------------------------- /nii_threshreslicecluster.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_threshreslicecluster.m -------------------------------------------------------------------------------- /nii_tiff2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_tiff2nii.m -------------------------------------------------------------------------------- /nii_tight_crop.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_tight_crop.m -------------------------------------------------------------------------------- /nii_timecourse_roi.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_timecourse_roi.m -------------------------------------------------------------------------------- /nii_ungz.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_ungz.m -------------------------------------------------------------------------------- /nii_unsharpmask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_unsharpmask.m -------------------------------------------------------------------------------- /nii_voi2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_voi2nii.m -------------------------------------------------------------------------------- /nii_z2p.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_z2p.m -------------------------------------------------------------------------------- /nii_zeronan.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_zeronan.m -------------------------------------------------------------------------------- /nii_zintensity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_zintensity.m -------------------------------------------------------------------------------- /nii_zoneplate3d.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/nii_zoneplate3d.m -------------------------------------------------------------------------------- /old_setOrigin12.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/old_setOrigin12.m -------------------------------------------------------------------------------- /pepper.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/pepper.jpg -------------------------------------------------------------------------------- /photo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/photo.png -------------------------------------------------------------------------------- /png2nii.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/png2nii.m -------------------------------------------------------------------------------- /stat_dprime.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/stat_dprime.m -------------------------------------------------------------------------------- /t1_fieldstrength.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t1_fieldstrength.m -------------------------------------------------------------------------------- /t1_fieldstrength.m.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t1_fieldstrength.m.txt -------------------------------------------------------------------------------- /t1_tissue.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t1_tissue.m -------------------------------------------------------------------------------- /t2_contrast.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t2_contrast.m -------------------------------------------------------------------------------- /t2_fieldstrength.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t2_fieldstrength.m -------------------------------------------------------------------------------- /t2_tissue.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/t2_tissue.m -------------------------------------------------------------------------------- /test.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/test.txt -------------------------------------------------------------------------------- /timeShift.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/timeShift.m -------------------------------------------------------------------------------- /tr_flipangle.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/tr_flipangle.m -------------------------------------------------------------------------------- /tracktion: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rordenlab/spmScripts/HEAD/tracktion -------------------------------------------------------------------------------- /voi2nii.m: -------------------------------------------------------------------------------- 1 | --------------------------------------------------------------------------------