├── .github ├── dependabot.yml └── workflows │ └── test_and_deploy.yml ├── .gitignore ├── .napari-hub └── DESCRIPTION.md ├── .pre-commit-config.yaml ├── LICENSE ├── MANIFEST.in ├── README.md ├── checkpoints └── download_ckpts.sh ├── pyproject.toml ├── src └── napari_segment_anything_2 │ ├── __init__.py │ ├── _tests │ ├── __init__.py │ └── test_widget.py │ ├── _widget.py │ ├── configs │ ├── __init__.py │ ├── sam2_hiera_b+.yaml │ ├── sam2_hiera_l.yaml │ ├── sam2_hiera_s.yaml │ └── sam2_hiera_t.yaml │ ├── napari.yaml │ ├── sam2.py │ └── utils.py └── tox.ini /.github/dependabot.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/.github/dependabot.yml -------------------------------------------------------------------------------- /.github/workflows/test_and_deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/.github/workflows/test_and_deploy.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/.gitignore -------------------------------------------------------------------------------- /.napari-hub/DESCRIPTION.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/.napari-hub/DESCRIPTION.md -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/README.md -------------------------------------------------------------------------------- /checkpoints/download_ckpts.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/checkpoints/download_ckpts.sh -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/pyproject.toml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/__init__.py -------------------------------------------------------------------------------- /src/napari_segment_anything_2/_tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /src/napari_segment_anything_2/_tests/test_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/_tests/test_widget.py -------------------------------------------------------------------------------- /src/napari_segment_anything_2/_widget.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/_widget.py -------------------------------------------------------------------------------- /src/napari_segment_anything_2/configs/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/configs/__init__.py -------------------------------------------------------------------------------- /src/napari_segment_anything_2/configs/sam2_hiera_b+.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/configs/sam2_hiera_b+.yaml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/configs/sam2_hiera_l.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/configs/sam2_hiera_l.yaml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/configs/sam2_hiera_s.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/configs/sam2_hiera_s.yaml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/configs/sam2_hiera_t.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/configs/sam2_hiera_t.yaml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/napari.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/napari.yaml -------------------------------------------------------------------------------- /src/napari_segment_anything_2/sam2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/sam2.py -------------------------------------------------------------------------------- /src/napari_segment_anything_2/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/src/napari_segment_anything_2/utils.py -------------------------------------------------------------------------------- /tox.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/royerlab/napari-segment-anything-2/HEAD/tox.ini --------------------------------------------------------------------------------