├── LICENSE.txt ├── README.md ├── linux ├── main.sh ├── scripts │ ├── MSA2consensus.py │ ├── bam2fasta.sh │ ├── blast2clusters.py │ ├── credibility.py │ ├── credibility.sh │ ├── find-coupled-clusters.py │ ├── find-coupled-clusters.sh │ └── visualization.R └── set-env-linux.yml ├── macOS ├── launcher.py ├── main.sh ├── scripts │ ├── MSA2consensus.py │ ├── bam2fasta.sh │ ├── blast2clusters.py │ ├── credibility.py │ ├── credibility.sh │ ├── find-coupled-clusters.py │ ├── find-coupled-clusters.sh │ └── visualization.R ├── set-env.yml └── setup.sh ├── validation ├── Benchmarking.Rmd ├── Benchmarking.md ├── Testing Scenarios.Rmd └── Testing-Scenarios.md └── walkthrough ├── README.md ├── test-assembly.fasta └── test-reads.fq /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rpianezza/GenomeDelta/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: 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