├── .gitignore ├── KPaths_Presentation.pptx ├── README.md ├── assets ├── K-Paths-overview.pdf └── K-Paths-overview.png ├── gnn ├── data_utils.py ├── eval.py ├── model.py ├── train.py └── train_eval_utils.py ├── k-paths ├── create_augmented_network.py ├── get-Kpaths.py ├── get-subgraph.py └── utils │ ├── Kpaths_utils.py │ ├── augmented_network_utils.py │ └── subgraph_utils.py ├── llm ├── evaluate_llm_bertscore.py ├── evaluate_llm_regex.py ├── llm_inference.py └── llm_inference_v2.py └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- 1 | data 2 | .DS_Store 3 | kpaths-env 4 | __pycache__/ 5 | __MACOSX -------------------------------------------------------------------------------- /KPaths_Presentation.pptx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rsinghlab/K-Paths/HEAD/KPaths_Presentation.pptx 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