├── .gitignore ├── LICENSE.md ├── R └── build.R ├── README.Rmd ├── README.md ├── assets └── css │ └── conf-2020.css ├── communicate-rmd-workshop.Rproj ├── config.toml ├── config └── _default │ ├── languages.toml │ ├── menus.toml │ └── params.toml ├── content ├── about │ ├── abstract.md │ ├── conf.md │ ├── index.md │ ├── learning-objectives.md │ └── three-questions.md ├── authors │ ├── alison │ │ ├── _index.md │ │ └── avatar.jpg │ └── emi │ │ ├── _index.md │ │ └── avatar.jpg ├── home │ ├── hero.md │ └── index.md ├── license.md ├── materials │ ├── 01 │ │ ├── index.Rmd │ │ └── index.html │ ├── 02 │ │ ├── index.Rmd │ │ └── index.html │ ├── 03 │ │ ├── index.Rmd │ │ └── index.html │ ├── 04 │ │ ├── index.Rmd │ │ └── index.html │ ├── _index.md │ └── prework │ │ ├── featured.jpg │ │ ├── index.Rmd │ │ └── index.html ├── people │ ├── index.md │ └── people.md └── schedule │ └── index.md ├── data ├── fonts │ ├── font1.toml │ ├── font2.toml │ ├── font3.toml │ └── font4.toml └── themes │ ├── conf1.toml │ ├── conf2.toml │ ├── conf3.toml │ ├── conf4.toml │ ├── theme1.toml │ ├── theme2.toml │ ├── theme3.toml │ └── theme4.toml ├── index.Rmd ├── layouts └── partials │ ├── li_compact.html │ ├── li_list.html │ ├── site_footer.html │ └── widgets │ ├── hero.html │ └── people.html ├── netlify.toml ├── plan └── resources.md ├── resources └── _gen │ ├── assets │ ├── css │ │ └── css │ │ │ ├── academic-bundle-pre.css_d3f53f09220d597dac26fe7840c31fc9.content │ │ │ ├── academic-bundle-pre.css_d3f53f09220d597dac26fe7840c31fc9.json │ │ │ ├── academic.css_187be290e8222f6bb644052568a2fb6d.content │ │ │ └── academic.css_187be290e8222f6bb644052568a2fb6d.json │ ├── js │ │ └── js │ │ │ ├── academic-bundle-pre.js_d3f53f09220d597dac26fe7840c31fc9.content │ │ │ ├── academic-bundle-pre.js_d3f53f09220d597dac26fe7840c31fc9.json │ │ │ ├── academic.min.js_187be290e8222f6bb644052568a2fb6d.content │ │ │ └── academic.min.js_187be290e8222f6bb644052568a2fb6d.json │ └── scss │ │ └── sass │ │ ├── main.scss_5605ecb7fa3240a2f23d47aaede4565f.content │ │ └── main.scss_5605ecb7fa3240a2f23d47aaede4565f.json │ └── images │ └── authors │ ├── alison │ ├── avatar_huf96626ec1be0123e11505e1dfd66d46e_271118_150x150_fill_q90_lanczos_center.jpg │ └── avatar_huf96626ec1be0123e11505e1dfd66d46e_271118_250x250_fill_q90_lanczos_center.jpg │ └── emi │ ├── avatar_hu6b53dde7a680f39011e8492aa8335efe_9728_150x150_fill_q90_lanczos_center.jpg │ └── avatar_hu6b53dde7a680f39011e8492aa8335efe_9728_250x250_fill_q90_lanczos_center.jpg ├── static ├── images │ └── logos │ │ ├── edu-color.eps │ │ ├── edu-color.jpg │ │ ├── edu-color.pdf │ │ ├── edu-color.png │ │ ├── edu-white.pdf │ │ └── edu-white.png ├── img │ ├── RStudio-Logo-Flat.png │ ├── grevillea.jpg │ ├── holger-link-_WpDP2QwJYY-unsplash.jpg │ ├── icon-192.png │ ├── icon-512.png │ ├── icon.png │ ├── manuka2.jpg │ ├── protea-banner.png │ ├── proteaceae.jpg │ └── rstudio-edu-logo.png └── slides │ ├── 00-loop.Rmd │ ├── 00-loop.html │ ├── 01-basics.Rmd │ ├── 01-basics.html │ ├── 01-basics_files │ └── figure-html │ │ ├── unnamed-chunk-21-1.png │ │ ├── unnamed-chunk-22-1.png │ │ ├── unnamed-chunk-23-1.png │ │ ├── unnamed-chunk-25-1.png │ │ ├── unnamed-chunk-26-1.png │ │ └── unnamed-chunk-27-1.png │ ├── 02-advanced.Rmd │ ├── 02-advanced.html │ ├── 03-templates.Rmd │ ├── 03-templates.html │ ├── 04-collections.Rmd │ ├── 04-collections.html │ ├── 04-collections_files │ └── figure-html │ │ ├── unnamed-chunk-10-1.gif │ │ ├── unnamed-chunk-11-1.gif │ │ ├── unnamed-chunk-12-1.gif │ │ ├── unnamed-chunk-2-1.gif │ │ ├── unnamed-chunk-8-1.gif │ │ └── unnamed-chunk-9-1.gif │ ├── assets │ ├── Lightbulb.png │ ├── Live-code-orange.png │ ├── Live-code-teal.png │ ├── Live-code.png │ ├── Your-turn-orange.png │ ├── Your-turn-teal.png │ ├── Your-turn.png │ ├── css │ │ ├── RStudio-Logo-Flat.png │ │ ├── RStudio-Logo-White.png │ │ ├── my-fonts.css │ │ ├── my-theme.css │ │ └── rstudio-edu-logo.png │ ├── fyi.png │ ├── header.html │ ├── lightbulb-color.png │ └── loop.html │ ├── how-rmd-works.Rmd │ ├── how-rmd-works.html │ ├── images │ ├── 01-blogdown-github.png │ ├── 02-blogdown-clone.png │ ├── 03-blogdown-build.png │ ├── 04-blogdown-netlify.png │ ├── Data.jpg │ ├── Knit-to-html.jpg │ ├── RStudio-Logo-White.png │ ├── awesome-blogdown │ │ ├── amber.png │ │ ├── dan.png │ │ ├── desiree.png │ │ ├── dewey.png │ │ ├── earo.png │ │ ├── emi-showcase.gif │ │ ├── joyce.png │ │ ├── maya.png │ │ ├── openscapes.png │ │ └── therese.png │ ├── blogdown-lifecycle │ │ ├── Slide1.png │ │ ├── Slide10.png │ │ ├── Slide2.png │ │ ├── Slide3.png │ │ ├── Slide4.png │ │ ├── Slide5.png │ │ ├── Slide6.png │ │ ├── Slide7.png │ │ ├── Slide8.png │ │ └── Slide9.png │ ├── christopher-burns-215Fiqh6hRc-unsplash.jpg │ ├── cloud-from-git.png │ ├── cloud-from-https.png │ ├── cloud-from-template.png │ ├── deploy-to-netlify.png │ ├── doc-base.jpg │ ├── doc-care.jpg │ ├── doc-dressup.jpg │ ├── doc-fancy.jpg │ ├── doc-hide.jpg │ ├── doc-live.jpg │ ├── doc-make.jpg │ ├── doc-yours.jpg │ ├── doll.png │ ├── foil_rstudio.jpg │ ├── grevillea.png │ ├── haba-elise.jpg │ ├── hello-red.jpg │ ├── horst_here.png │ ├── hugo-themes.gif │ ├── hugo │ │ ├── 1.png │ │ ├── 10.png │ │ ├── 11.png │ │ ├── 12.png │ │ ├── 13.png │ │ ├── 2.png │ │ ├── 3.png │ │ ├── 4.png │ │ ├── 5.png │ │ ├── 6.png │ │ ├── 7.png │ │ ├── 8.png │ │ └── 9.png │ ├── joy-of-fp │ │ ├── bakers_1.png │ │ ├── bakers_2.png │ │ ├── bakers_3.png │ │ ├── bakers_4.png │ │ ├── bakers_5.png │ │ ├── bakers_6.png │ │ ├── bakers_7.png │ │ ├── bakers_8.png │ │ ├── data_cowboy.png │ │ ├── forloops.png │ │ ├── map2_cupcakes.png │ │ ├── map_frosting.png │ │ ├── presenting_monster.png │ │ └── purrr_cat.png │ ├── knit-dropdown.png │ ├── orchestra.jpg │ ├── outputs.png │ ├── ppt.png │ ├── protea-banner.png │ ├── proteaceae.jpg │ ├── rmarkdown_wizards.png │ ├── rmd-file.png │ ├── rmd-nav.png │ ├── rmdbase-formats.png │ ├── rproj.png │ ├── welliewishers │ │ ├── Slide1.png │ │ └── Slide2.png │ └── word.png │ ├── libs │ ├── countdown │ │ ├── countdown.css │ │ ├── countdown.js │ │ └── smb_stage_clear.mp3 │ └── remark-css │ │ └── default.css │ ├── what-is-rmd.Rmd │ └── what-is-rmd.html └── themes └── hugo-academic ├── .editorconfig ├── .github ├── FUNDING.yml └── PULL_REQUEST_TEMPLATE.md ├── .gitignore ├── LICENSE.md ├── README.md ├── academic.png ├── archetypes ├── default.md ├── docs.md ├── home.md ├── post │ └── index.md ├── project │ └── index.md ├── publication │ └── index.md ├── slides │ └── index.md └── talk │ └── index.md ├── assets ├── css │ ├── reveal.css │ └── reveal_custom.css ├── js │ ├── academic-search.js │ ├── academic.js │ ├── algolia-search.js │ ├── mathjax-config.js │ └── vendor │ │ └── bootstrap.min.js └── sass │ ├── academic │ ├── _card.scss │ ├── _content.scss │ ├── _dark.scss │ ├── _docs.scss │ ├── _integrations.scss │ ├── _listings.scss │ ├── _nav.scss │ ├── _root.scss │ ├── _search.scss │ ├── _widgets.scss │ └── academic.scss │ ├── bootstrap_variables.scss │ ├── main.scss │ └── vendor │ └── bootstrap │ ├── _alert.scss │ ├── _badge.scss │ ├── _breadcrumb.scss │ ├── _button-group.scss │ ├── _buttons.scss │ ├── _card.scss │ ├── _carousel.scss │ ├── _close.scss │ ├── _code.scss │ ├── _custom-forms.scss │ ├── _dropdown.scss │ ├── _forms.scss │ ├── _functions.scss │ ├── _grid.scss │ ├── _images.scss │ ├── _input-group.scss │ ├── _jumbotron.scss │ ├── _list-group.scss │ ├── _media.scss │ ├── _mixins.scss │ ├── _modal.scss │ ├── _nav.scss │ ├── _navbar.scss │ ├── _pagination.scss │ ├── _popover.scss │ ├── _print.scss │ ├── _progress.scss │ ├── _reboot.scss │ ├── _root.scss │ ├── _spinners.scss │ ├── _tables.scss │ ├── _toasts.scss │ ├── _tooltip.scss │ ├── _transitions.scss │ ├── _type.scss │ ├── _utilities.scss │ ├── _variables.scss │ ├── bootstrap-grid.scss │ ├── bootstrap-reboot.scss │ ├── bootstrap.scss │ ├── mixins │ ├── _alert.scss │ ├── _background-variant.scss │ ├── _badge.scss │ ├── _border-radius.scss │ ├── _box-shadow.scss │ ├── _breakpoints.scss │ ├── _buttons.scss │ ├── _caret.scss │ ├── _clearfix.scss │ ├── _deprecate.scss │ ├── _float.scss │ ├── _forms.scss │ ├── _gradients.scss │ ├── _grid-framework.scss │ ├── _grid.scss │ ├── _hover.scss │ ├── _image.scss │ ├── _list-group.scss │ ├── _lists.scss │ ├── _nav-divider.scss │ ├── _pagination.scss │ ├── _reset-text.scss │ ├── _resize.scss │ ├── _screen-reader.scss │ ├── _size.scss │ ├── _table-row.scss │ ├── _text-emphasis.scss │ ├── _text-hide.scss │ ├── _text-truncate.scss │ ├── _transition.scss │ └── _visibility.scss │ ├── utilities │ ├── _align.scss │ ├── _background.scss │ ├── _borders.scss │ ├── _clearfix.scss │ ├── _display.scss │ ├── _embed.scss │ ├── _flex.scss │ ├── _float.scss │ ├── _overflow.scss │ ├── _position.scss │ ├── _screenreaders.scss │ ├── _shadows.scss │ ├── _sizing.scss │ ├── _spacing.scss │ ├── _stretched-link.scss │ ├── _text.scss │ └── _visibility.scss │ └── vendor │ └── _rfs.scss ├── data ├── academic.toml ├── assets.toml ├── fonts │ └── conf_2020.toml ├── i18n │ └── languages.yaml ├── page_sharer.toml ├── publication_types.toml └── themes │ └── conf_2020.toml ├── demo.sh ├── exampleSite ├── config │ └── _default │ │ ├── config.toml │ │ ├── languages.toml │ │ ├── menus.toml │ │ └── params.toml ├── content │ ├── authors │ │ └── admin │ │ │ ├── _index.md │ │ │ └── avatar.jpg │ ├── courses │ │ ├── _index.md │ │ └── example │ │ │ ├── _index.md │ │ │ ├── example1.md │ │ │ └── example2.md │ ├── home │ │ ├── about.md │ │ ├── accomplishments.md │ │ ├── contact.md │ │ ├── demo.md │ │ ├── experience.md │ │ ├── featured.md │ │ ├── gallery │ │ │ ├── gallery │ │ │ │ ├── theme-1950s.png │ │ │ │ ├── theme-apogee.png │ │ │ │ ├── theme-coffee-playfair.png │ │ │ │ ├── theme-dark.png │ │ │ │ ├── theme-default.png │ │ │ │ ├── theme-forest.png │ │ │ │ ├── theme-ocean.png │ │ │ │ └── theme-strawberry.png │ │ │ └── index.md │ │ ├── hero.md │ │ ├── index.md │ │ ├── people.md │ │ ├── posts.md │ │ ├── projects.md │ │ ├── publications.md │ │ ├── skills.md │ │ ├── slider.md │ │ ├── tags.md │ │ └── talks.md │ ├── post │ │ ├── _index.md │ │ ├── getting-started │ │ │ ├── featured.jpg │ │ │ ├── gallery │ │ │ │ ├── theme-1950s.png │ │ │ │ ├── theme-apogee.png │ │ │ │ ├── theme-coffee-playfair.png │ │ │ │ ├── theme-dark.png │ │ │ │ ├── theme-default.png │ │ │ │ ├── theme-forest.png │ │ │ │ ├── theme-ocean.png │ │ │ │ └── theme-strawberry.png │ │ │ └── index.md │ │ └── jupyter │ │ │ ├── academic.ipynb │ │ │ ├── academic_0_0.png │ │ │ ├── featured.png │ │ │ └── index.md │ ├── privacy.md │ ├── project │ │ ├── external-project │ │ │ ├── featured.jpg │ │ │ └── index.md │ │ └── internal-project │ │ │ ├── featured.jpg │ │ │ └── index.md │ ├── publication │ │ ├── _index.md │ │ ├── conference-paper │ │ │ ├── cite.bib │ │ │ ├── featured.jpg │ │ │ └── index.md │ │ ├── journal-article │ │ │ ├── cite.bib │ │ │ ├── featured.jpg │ │ │ └── index.md │ │ └── preprint │ │ │ ├── featured.jpg │ │ │ └── index.md │ ├── slides │ │ └── example │ │ │ └── index.md │ └── talk │ │ ├── _index.md │ │ └── example │ │ ├── featured.jpg │ │ └── index.md └── static │ └── img │ ├── boards.jpg │ ├── headers │ └── bubbles-wide.jpg │ └── hero-academic.png ├── i18n ├── ca.yaml ├── da.yaml ├── de.yaml ├── el.yaml ├── en.yaml ├── es.yaml ├── eu.yaml ├── fr.yaml ├── hu.yaml ├── id.yaml ├── it.yaml ├── ja.yaml ├── ko.yaml ├── nl.yaml ├── pl.yaml ├── pt.yaml ├── ro.yaml ├── ru.yaml ├── tr.yaml ├── vi.yaml └── zh.yaml ├── images ├── screenshot.png ├── theme-1950s.png ├── theme-apogee.png ├── theme-coffee-playfair.png ├── theme-cupcake.png ├── theme-dark.png ├── theme-default.png ├── theme-forest.png ├── theme-ocean.png ├── theme-spacer.png ├── theme-strawberry.png └── tn.png ├── layouts ├── 404.html ├── _default │ ├── baseof.html │ ├── list.html │ ├── rss.xml │ └── single.html ├── authors │ ├── list.html │ └── terms.html ├── docs │ ├── list.html │ └── single.html ├── index.html ├── index.json ├── partials │ ├── citation.html │ ├── comments.html │ ├── cookie_consent.html │ ├── custom_head.html │ ├── custom_js.html │ ├── docs_layout.html │ ├── docs_sidebar.html │ ├── docs_toc_foot.html │ ├── functions │ │ ├── get_pub_types.html │ │ └── parse_theme.html │ ├── li_card.html │ ├── li_citation.html │ ├── li_compact.html │ ├── li_list.html │ ├── navbar.html │ ├── page_author.html │ ├── page_header.html │ ├── page_links.html │ ├── page_links_div.html │ ├── page_metadata.html │ ├── page_metadata_authors.html │ ├── pagination.html │ ├── project_li_card.html │ ├── project_li_list.html │ ├── project_li_showcase.html │ ├── search.html │ ├── section_pager.html │ ├── share.html │ ├── site_footer.html │ ├── site_head.html │ ├── site_js.html │ ├── slides.html │ ├── tags.html │ ├── widget_page.html │ └── widgets │ │ ├── about.html │ │ ├── accomplishments.html │ │ ├── blank.html │ │ ├── contact.html │ │ ├── experience.html │ │ ├── featured.html │ │ ├── featurette.html │ │ ├── hero.html │ │ ├── pages.html │ │ ├── people.html │ │ ├── portfolio.html │ │ ├── slider.html │ │ └── tag_cloud.html ├── project │ └── single.html ├── publication │ └── single.html ├── section │ ├── docs.html │ ├── post.html │ ├── publication.html │ └── talk.html ├── shortcodes │ ├── alert.html │ ├── diagram.html │ ├── figure.html │ ├── fragment.html │ ├── gallery.html │ ├── gdocs.html │ ├── hl.html │ ├── list_categories.html │ ├── list_tags.html │ ├── slide.html │ ├── speaker_note.html │ ├── staticref.html │ ├── toc.html │ └── video.html ├── slides │ ├── baseof.html │ ├── list.html │ └── single.html ├── talk │ └── single.html └── widget_page │ └── single.html ├── netlify.toml ├── package-lock.json ├── package.json ├── scripts ├── sync_i18n.py └── update_bootstrap.sh ├── static ├── img │ ├── icon-192.png │ └── icon.png ├── js │ └── vendor │ │ └── reveal.js │ │ └── plugin │ │ └── notes │ │ ├── notes.html │ │ └── notes.js └── site.webmanifest └── theme.toml /.gitignore: -------------------------------------------------------------------------------- 1 | .Rproj.user 2 | .Rhistory 3 | .RData 4 | .Ruserdata 5 | .DS_store 6 | public 7 | README.html 8 | -------------------------------------------------------------------------------- /R/build.R: -------------------------------------------------------------------------------- 1 | blogdown::build_dir('static') 2 | -------------------------------------------------------------------------------- /communicate-rmd-workshop.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: XeLaTeX 14 | 15 | AutoAppendNewline: Yes 16 | 17 | BuildType: Website 18 | -------------------------------------------------------------------------------- /config/_default/languages.toml: -------------------------------------------------------------------------------- 1 | # Languages 2 | # Create a `[X]` block for each language you want, where X is the language ID. 3 | # Refer to https://sourcethemes.com/academic/docs/language/ 4 | 5 | # Configure the English version of the site. 6 | [en] 7 | languageCode = "en-us" 8 | # contentDir = "content/en" # Uncomment for multi-lingual sites, and move English content into `en` sub-folder. 9 | 10 | # Uncomment the lines below to configure your website in a second language. 11 | #[zh] 12 | # languageCode = "zh-Hans" 13 | # contentDir = "content/zh" 14 | # title = "Chinese website title..." 15 | # [zh.params] 16 | # description = "Site description in Chinese..." 17 | # [[zh.menu.main]] 18 | # name = "Wo" 19 | # url = "#about" 20 | # weight = 1 21 | -------------------------------------------------------------------------------- /config/_default/menus.toml: -------------------------------------------------------------------------------- 1 | # Navigation Links 2 | # To link a homepage widget, specify the URL as a hash `#` followed by the filename of the 3 | # desired widget in your `content/home/` folder. 4 | # The weight parameter defines the order that the links will appear in. 5 | 6 | [[main]] 7 | name = "About" 8 | url = "about" 9 | weight = 10 10 | identifier = "about" 11 | 12 | [[main]] 13 | name = "Details" 14 | url = "about#conf" 15 | weight = 10 16 | parent = "about" 17 | 18 | [[main]] 19 | name = "Is this workshop for me?" 20 | url = "about#three-questions" 21 | weight = 20 22 | parent = "about" 23 | 24 | [[main]] 25 | name = "Overview" 26 | url = "about#abstract" 27 | weight = 30 28 | parent = "about" 29 | 30 | [[main]] 31 | name = "Schedule" 32 | url = "schedule" 33 | weight = 30 34 | 35 | [[main]] 36 | name = "Materials" 37 | url = "materials" 38 | weight = 40 39 | 40 | [[main]] 41 | name = "People" 42 | url = "people" 43 | weight = 50 44 | 45 | [[main]] 46 | pre = "" 47 | name = "" 48 | url = "https://bit.ly/ysc-rmarkdown" 49 | weight = 60 50 | 51 | -------------------------------------------------------------------------------- /content/about/conf.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # Contact widget. 3 | widget = "contact" # See https://sourcethemes.com/academic/docs/page-builder/ 4 | headless = true # This file represents a page section. 5 | active = true # Activate this widget? true/false 6 | weight = 10 # Order that this section will appear. 7 | 8 | title = "Details" 9 | subtitle = "" 10 | 11 | # Automatically link email and phone? 12 | autolink = false 13 | 14 | # Email form provider 15 | # 0: Disable email form 16 | # 1: Netlify (requires that the site is hosted by Netlify) 17 | # 2: formspree.io 18 | email_form = 0 19 | 20 | [design.background] 21 | # Apply a background color, gradient, or image. 22 | # Uncomment (by removing `#`) an option to apply it. 23 | # Choose a light or dark text color by setting `text_color_light`. 24 | # Any HTML color name or Hex value is valid. 25 | 26 | # Background color. 27 | # color = "navy" 28 | 29 | # Background image. 30 | image = "manuka2.jpg" # Name of image in `static/img/`. 31 | image_darken = 0.4 # Darken the image? Range 0-1 where 0 is transparent and 1 is opaque. 32 | 33 | # Text color (true=light or false=dark). 34 | text_color_light = true 35 | 36 | [design.spacing] 37 | # Customize the section spacing. Order is top, right, bottom, left. 38 | padding = ["2em", "0", "6em", "0"] 39 | +++ 40 | 41 | -------------------------------------------------------------------------------- /content/about/index.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "About the workshop" # Add a page title. 3 | summary: "Abstract, learning objectives, and key questions for potential participants" # Add a page description. 4 | date: "2019-01-01T00:00:00Z" # Add today's date. 5 | type: "widget_page" # Page type is a Widget Page 6 | --- 7 | -------------------------------------------------------------------------------- /content/about/learning-objectives.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # An Overview section created with the Blank widget. 3 | # Any elements can be added in the body: https://sourcethemes.com/academic/docs/writing-markdown-latex/ 4 | # Add more sections by duplicating this file and customizing to your requirements. 5 | 6 | widget = "blank" # See https://sourcethemes.com/academic/docs/page-builder/ 7 | headless = true # This file represents a page section. 8 | active = false # Activate this widget? true/false 9 | weight = 40 # Order that this section will appear. 10 | 11 | title = "Learning Objectives" 12 | subtitle = "" 13 | 14 | [design] 15 | # Choose how many columns the section has. Valid values: 1 or 2. 16 | columns = "2" 17 | 18 | [design.background] 19 | # Apply a background color, gradient, or image. 20 | # Uncomment (by removing `#`) an option to apply it. 21 | # Choose a light or dark text color by setting `text_color_light`. 22 | # Any HTML color name or Hex value is valid. 23 | 24 | # Background color. 25 | # color = "navy" 26 | 27 | # Background gradient. 28 | # gradient_start = "DeepSkyBlue" 29 | # gradient_end = "SkyBlue" 30 | 31 | # Background image. 32 | image = "" # Name of image in `static/img/`. 33 | image_darken = 0.6 # Darken the image? Range 0-1 where 0 is transparent and 1 is opaque. 34 | 35 | # Text color (true=light or false=dark). 36 | text_color_light = false 37 | 38 | [design.spacing] 39 | # Customize the section spacing. Order is top, right, bottom, left. 40 | padding = ["6em", "0", "10em", "0"] 41 | 42 | [advanced] 43 | # Custom CSS. 44 | css_style = "margin-top: -1em !important;" 45 | 46 | # CSS class. 47 | css_class = "" 48 | +++ 49 | 50 | Participants will learn how to: 51 | 52 | -------------------------------------------------------------------------------- /content/about/three-questions.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # A "Three Questions" section created with the Featurette widget. 3 | widget = "featurette" # See https://sourcethemes.com/academic/docs/page-builder/ 4 | headless = true # This file represents a page section. 5 | active = true # Activate this widget? true/false 6 | weight = 20 # Order that this section will appear. 7 | 8 | title = "Is this workshop for me?" 9 | subtitle = "This workshop will be appropriate for attendees who answer yes to these questions:" 10 | 11 | # Add/remove as many `[[feature]]` blocks below as you like. 12 | # 13 | # For available icons, see: https://sourcethemes.com/academic/docs/widgets/#icons 14 | 15 | [[feature]] 16 | icon = "github" 17 | icon_pack = "fab" 18 | name = "" 19 | description = "Have you heard of version control or GitHub and curious to learn more?" 20 | 21 | [[feature]] 22 | icon = "r-project" 23 | icon_pack = "fab" 24 | name = "" 25 | description = "Have you downloaded and used R? Can you install and load packages?" 26 | 27 | [[feature]] 28 | icon = "laptop-code" 29 | icon_pack = "fas" 30 | name = "" 31 | description = "Have you used R with the RStudio Integrated Development Environment (IDE)?

Can you send R code from a source file (`.R`, `.Rmd`) to the console?" 32 | 33 | [design.spacing] 34 | # Customize the section spacing. Order is top, right, bottom, left. 35 | padding = ["6em", "0", "0", "0"] 36 | 37 | [advanced] 38 | # Custom CSS. 39 | css_style = "margin-top: -1em !important;" 40 | 41 | +++ 42 | -------------------------------------------------------------------------------- /content/authors/alison/avatar.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rstudio-education/communicate-rmd-workshop/3b19af19dffe98f2f69b446b312649e77da0e732/content/authors/alison/avatar.jpg -------------------------------------------------------------------------------- /content/authors/emi/_index.md: -------------------------------------------------------------------------------- 1 | --- 2 | authors: 3 | - admin 4 | bio: I am a statistics academic. 5 | education: 6 | courses: 7 | - course: PhD in Statistics 8 | institution: The University of Sydney 9 | year: 2015 10 | email: "dr.emi.tanaka@gmail.com" 11 | interests: 12 | - Applied Statistics 13 | - Biometrics 14 | - Bioinformatics 15 | - Data Visualisation 16 | - Experimental Design 17 | - Quantitative Genetics 18 | - Statistical Modelling 19 | name: Emi Tanaka 20 | organizations: 21 | - name: The University of Sydney (soon Monash University) 22 | url: "https://emitanaka.org/" 23 | role: Lecturer 24 | social: 25 | - icon: twitter 26 | icon_pack: fab 27 | link: https://twitter.com/statsgen 28 | - icon: github 29 | icon_pack: fab 30 | link: https://github.com/emitanaka 31 | user_groups: 32 | - Teaching Assistants 33 | --- 34 | 35 | I wanted to be a comic artist but I came first in mathematics in high school so I figured my maths skills wasn't bad. I can't say the same for my drawing skills. I was realistic and chose to major in mathematics and statistics at uni. I managed to get accepted to do honours then got a PhD scholarship offer. Lucky for me offers kept on rolling in and somehow I made it as a tenured/permanent position at Monash, where a group of people I admire work. Once I pass probation, I'm going to draw more (don't tell my head of department). Currently, looking more into R internals and grid package so I can draw with code. It's hard. 36 | 37 | Enjoys: drawing and coding. 38 | -------------------------------------------------------------------------------- /content/authors/emi/avatar.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rstudio-education/communicate-rmd-workshop/3b19af19dffe98f2f69b446b312649e77da0e732/content/authors/emi/avatar.jpg -------------------------------------------------------------------------------- /content/home/index.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # Homepage 3 | type = "widget_page" 4 | headless = true # Homepage is headless, other widget pages are not. 5 | +++ 6 | -------------------------------------------------------------------------------- /content/materials/01/index.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 01: R Markdown Basics' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | 8 | # Talk start and end times. 9 | # End time can optionally be hidden by prefixing the line with `#`. 10 | date: "2019-09-30T08:00:00Z" 11 | #date_end: "2019-10-02T12:00:00Z" 12 | all_day: true 13 | publishdate: "2019-06-15" 14 | 15 | links: 16 | - icon: images 17 | icon_pack: fas 18 | name: slides 19 | url: /slides/01-basics.html 20 | 21 | lastmod: '2019-06-16T02:20:01-07:00' 22 | projects: [] 23 | weight: 2 24 | --- 25 | 26 | ```{r echo=FALSE} 27 | knitr::include_url("/slides/01-basics.html") 28 | ``` 29 | 30 | -------------------------------------------------------------------------------- /content/materials/01/index.html: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 01: R Markdown Basics' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | 8 | # Talk start and end times. 9 | # End time can optionally be hidden by prefixing the line with `#`. 10 | date: "2019-09-30T08:00:00Z" 11 | #date_end: "2019-10-02T12:00:00Z" 12 | all_day: true 13 | publishdate: "2019-06-15" 14 | 15 | links: 16 | - icon: images 17 | icon_pack: fas 18 | name: slides 19 | url: /slides/01-basics.html 20 | 21 | lastmod: '2019-06-16T02:20:01-07:00' 22 | projects: [] 23 | weight: 2 24 | --- 25 | 26 | 27 | 28 | 30 | -------------------------------------------------------------------------------- /content/materials/02/index.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 02: Advanced R Markdown' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | categories: [slides] 8 | tags: [] 9 | lastmod: '2019-08-29T11:21:55-07:00' 10 | featured: no 11 | image: 12 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 13 | focal_point: 'center' 14 | preview_only: yes 15 | projects: [] 16 | weight: 3 17 | links: 18 | - icon: images 19 | icon_pack: fas 20 | name: slides 21 | url: /slides/02-advanced.html 22 | --- 23 | 24 | 25 | ```{r echo=FALSE} 26 | knitr::include_url("/slides/02-advanced.html") 27 | ``` 28 | 29 | # Topics 30 | 31 | + Parameterized reports 32 | + R Markdown from the command line 33 | + Version controlled projects 34 | + Extension formats 35 | -------------------------------------------------------------------------------- /content/materials/02/index.html: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 02: Advanced R Markdown' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | categories: [slides] 8 | tags: [] 9 | lastmod: '2019-08-29T11:21:55-07:00' 10 | featured: no 11 | image: 12 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 13 | focal_point: 'center' 14 | preview_only: yes 15 | projects: [] 16 | weight: 3 17 | links: 18 | - icon: images 19 | icon_pack: fas 20 | name: slides 21 | url: /slides/02-advanced.html 22 | --- 23 | 24 | 25 | 26 | 28 |
29 |

Topics

30 | 36 |
37 | -------------------------------------------------------------------------------- /content/materials/03/index.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 03: Templates' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | categories: [slides] 8 | tags: [] 9 | lastmod: '2019-08-29T11:21:55-07:00' 10 | featured: no 11 | image: 12 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 13 | focal_point: 'center' 14 | preview_only: yes 15 | projects: [] 16 | weight: 4 17 | links: 18 | - icon: images 19 | icon_pack: fas 20 | name: slides 21 | url: /slides/03-templates.html 22 | --- 23 | 24 | 25 | ```{r echo=FALSE} 26 | knitr::include_url("/slides/03-templates.html") 27 | ``` 28 | 29 | 30 | -------------------------------------------------------------------------------- /content/materials/03/index.html: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 03: Templates' 3 | draft: false 4 | event: 'Young Statisticians Conference 2019' 5 | event_url: https://ysc2019.netlify.com/#workshop 6 | location: Canberra, Australia 7 | categories: [slides] 8 | tags: [] 9 | lastmod: '2019-08-29T11:21:55-07:00' 10 | featured: no 11 | image: 12 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 13 | focal_point: 'center' 14 | preview_only: yes 15 | projects: [] 16 | weight: 4 17 | links: 18 | - icon: images 19 | icon_pack: fas 20 | name: slides 21 | url: /slides/03-templates.html 22 | --- 23 | 24 | 25 | 26 | 28 | -------------------------------------------------------------------------------- /content/materials/04/index.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 04: Collections' 3 | draft: false 4 | date: '2019-08-29' 5 | categories: [slides] 6 | tags: [] 7 | lastmod: '2019-08-29T11:21:55-07:00' 8 | featured: no 9 | image: 10 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 11 | focal_point: 'center' 12 | preview_only: yes 13 | projects: [] 14 | weight: 5 15 | links: 16 | - icon: images 17 | icon_pack: fas 18 | name: slides 19 | url: /slides/04-collections.html 20 | --- 21 | 22 | ```{r echo=FALSE} 23 | knitr::include_url("/slides/04-collections.html") 24 | ``` 25 | 26 | 27 | -------------------------------------------------------------------------------- /content/materials/04/index.html: -------------------------------------------------------------------------------- 1 | --- 2 | title: 'Session 04: Collections' 3 | draft: false 4 | date: '2019-08-29' 5 | categories: [slides] 6 | tags: [] 7 | lastmod: '2019-08-29T11:21:55-07:00' 8 | featured: no 9 | image: 10 | caption: "[Proteaceæ image](https://www.c82.net/twining/plants/?id=118) by Nicholas Rougeux, CC-BY-SA" 11 | focal_point: 'center' 12 | preview_only: yes 13 | projects: [] 14 | weight: 5 15 | links: 16 | - icon: images 17 | icon_pack: fas 18 | name: slides 19 | url: /slides/04-collections.html 20 | --- 21 | 22 | 23 | 24 | 26 | -------------------------------------------------------------------------------- /content/materials/_index.md: -------------------------------------------------------------------------------- 1 | --- 2 | header: 3 | caption: "" 4 | image: "protea-banner.png" 5 | title: "Workshop materials" 6 | view: 1 7 | layout: post 8 | --- 9 | 10 | -------------------------------------------------------------------------------- /content/materials/prework/featured.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rstudio-education/communicate-rmd-workshop/3b19af19dffe98f2f69b446b312649e77da0e732/content/materials/prework/featured.jpg -------------------------------------------------------------------------------- /content/people/index.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "People" # Add a page title. 3 | summary: "Instructors and Teaching Assistants" # Add a page description. 4 | date: "2019-01-01T00:00:00Z" # Add today's date. 5 | type: "widget_page" # Page type is a Widget Page 6 | --- 7 | -------------------------------------------------------------------------------- /content/people/people.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # People widget. 3 | widget = "people" # See https://sourcethemes.com/academic/docs/page-builder/ 4 | headless = true # This file represents a page section. 5 | active = true # Activate this widget? true/false 6 | weight = 60 # Order that this section will appear. 7 | 8 | title = "" 9 | subtitle = "" 10 | 11 | # List user groups to display. 12 | # Edit each user's `user_groups` to add them to one or more of these groups. 13 | user_groups = ["Instructor", 14 | "Teaching Assistants"] 15 | +++ 16 | -------------------------------------------------------------------------------- /data/fonts/font1.toml: -------------------------------------------------------------------------------- 1 | # Font style metadata 2 | name = "workshop_font1" 3 | 4 | # Optional Google font URL 5 | google_fonts = "Cutive+Mono|Raleway:300,400,500,600|Crimson+Text" 6 | 7 | # Font families 8 | heading_font = "Crimson Text" 9 | body_font = "Raleway" 10 | nav_font = "Crimson Text" 11 | mono_font = "Cutive Mono" 12 | 13 | # Font size 14 | font_size = "17" 15 | font_size_small = "15" 16 | -------------------------------------------------------------------------------- /data/fonts/font2.toml: -------------------------------------------------------------------------------- 1 | # Font style metadata 2 | name = "workshop_font2" 3 | 4 | # Optional Google font URL 5 | google_fonts = "Cutive+Mono|Arvo|Lato" 6 | 7 | # Font families 8 | heading_font = "Arvo" 9 | body_font = "Lato" 10 | nav_font = "Arvo" 11 | mono_font = "Cutive Mono" 12 | 13 | # Font size 14 | font_size = "17" 15 | font_size_small = "15" 16 | -------------------------------------------------------------------------------- /data/fonts/font3.toml: -------------------------------------------------------------------------------- 1 | # Font style metadata 2 | name = "workshop_font3" 3 | 4 | # Optional Google font URL 5 | google_fonts = "Cutive+Mono|Raleway:300,400,500,600|Arvo|" 6 | 7 | # Font families 8 | heading_font = "Cutive Mono" 9 | body_font = "Raleway" 10 | nav_font = "Arvo" 11 | mono_font = "Cutive Mono" 12 | 13 | # Font size 14 | font_size = "15" 15 | font_size_small = "13" 16 | -------------------------------------------------------------------------------- /data/fonts/font4.toml: -------------------------------------------------------------------------------- 1 | # Font style metadata 2 | name = "josefin-slab" 3 | 4 | # Optional Google font URL 5 | google_fonts = "Cutive+Mono|Josefin+Slab:400,600,700|Quicksand" 6 | 7 | # Font families 8 | heading_font = "Josefin Slab" 9 | body_font = "Quicksand" 10 | nav_font = "Josefin Slab" 11 | mono_font = "Cutive Mono" 12 | 13 | # Font size 14 | font_size = "16" 15 | font_size_small = "16" 16 | -------------------------------------------------------------------------------- /data/themes/conf1.toml: -------------------------------------------------------------------------------- 1 | # Theme metadata 2 | name = "workshop_theme1" 3 | 4 | # Is theme light or dark? 5 | light = true 6 | 7 | # Primary 8 | primary ="#8e4866" 9 | 10 | # Links 11 | link = "#8e4866" 12 | link_hover = "#c37280" 13 | 14 | # Menu 15 | menu_primary = "#17A2B8" 16 | menu_text = "#f8f8f8" 17 | menu_text_active = "#c0e1e6" 18 | menu_title = "#ffffff" 19 | 20 | # Backgrounds 21 | background = "#fff" 22 | home_section_odd = "#fff" 23 | home_section_even = "#fff" 24 | -------------------------------------------------------------------------------- /data/themes/conf2.toml: -------------------------------------------------------------------------------- 1 | # Theme metadata 2 | name = "workshop_theme2" 3 | 4 | # Is theme light or dark? 5 | light = true 6 | 7 | # Primary 8 | primary ="#E7553C" #accent color 9 | primary_light = "#767071" 10 | primary_dark = "#575757" 11 | 12 | # Links 13 | link = "#E7553C" 14 | link_hover = "rgba(231,85,60,.8)" # hover color for icons beneath profile 15 | 16 | # Menu 17 | menu_primary = "#17a2b8" 18 | menu_text = "#f8f8f8" 19 | menu_text_active = "#c0e1e6" 20 | menu_title = "#ffffff" 21 | 22 | # Backgrounds 23 | background = "#ffffff" 24 | home_section_odd = "#ffffff" 25 | home_section_even = "#ffffff" 26 | -------------------------------------------------------------------------------- /data/themes/conf3.toml: -------------------------------------------------------------------------------- 1 | # Theme metadata 2 | name = "workshop_theme3" 3 | 4 | # Is theme light or dark? 5 | light = true 6 | 7 | # Primary 8 | primary ="#4D8DC9" #accent color 9 | 10 | 11 | # Links 12 | link = "#4D8DC9" 13 | link_hover = "#75AADB" # hover color for icons beneath profile 14 | 15 | # Menu 16 | menu_primary = "#94c36e" 17 | menu_text = "#ffffff" 18 | menu_text_active = "#d4e7c5" 19 | menu_title = "#fcfcfc" 20 | 21 | # Backgrounds 22 | background = "#ffffff" 23 | home_section_odd = "#ffffff" 24 | home_section_even = "#ffffff" 25 | -------------------------------------------------------------------------------- /data/themes/conf4.toml: -------------------------------------------------------------------------------- 1 | # Theme metadata 2 | name = "workshop_theme4" 3 | 4 | # Is theme light or dark? 5 | light = true 6 | 7 | # Primary 8 | primary ="#E7553C" #accent color 9 | 10 | 11 | # Links 12 | link = "#E7553C" 13 | link_hover = "#e7553ca1" 14 | 15 | # Menu 16 | menu_primary = "#447099" 17 | menu_text = "#ffffff" 18 | menu_text_active = "#b0c2d2" 19 | menu_title = "#ffffff" 20 | 21 | # Backgrounds 22 | background = "#f8f8f8" 23 | home_section_odd = "#f8f8f8" 24 | home_section_even = "#f8f8f8" 25 | -------------------------------------------------------------------------------- /data/themes/theme1.toml: -------------------------------------------------------------------------------- 1 | # Theme metadata 2 | name = "workshop_theme1" 3 | 4 | # Is theme light or dark? 5 | light = true 6 | 7 | # Primary 8 | primary ="#b2e0dd" 9 | primary_light = "#575757" 10 | primary_dark = "#1f547d" 11 | 12 | # Links 13 | link = "#1f547dbd" 14 | link_hover = "#1f547d" 15 | 16 | # Menu 17 | menu_primary = "#b2e0dd" 18 | menu_text = "#1f547dbd" 19 | menu_text_active = "#1f547d" 20 | menu_title = "#1f547d" 21 | 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19 | color: #f3f3f3; 20 | } 21 | /* Two-column layout */ 22 | .left-column { 23 | color: #777; 24 | width: 20%; 25 | height: 92%; 26 | float: left; 27 | } 28 | .left-column h2:last-of-type, .left-column h3:last-child { 29 | color: #000; 30 | } 31 | .right-column { 32 | width: 75%; 33 | float: right; 34 | padding-top: 1em; 35 | } 36 | .pull-left { 37 | float: left; 38 | width: 47%; 39 | } 40 | .pull-right { 41 | float: right; 42 | width: 47%; 43 | } 44 | .pull-right ~ * { 45 | clear: both; 46 | } 47 | img, video, iframe { 48 | max-width: 100%; 49 | } 50 | blockquote { 51 | border-left: solid 5px lightgray; 52 | padding-left: 1em; 53 | } 54 | .remark-slide table { 55 | margin: auto; 56 | border-top: 1px solid #666; 57 | border-bottom: 1px solid #666; 58 | } 59 | .remark-slide table thead th { border-bottom: 1px solid #ddd; } 60 | th, td { padding: 5px; } 61 | .remark-slide thead, .remark-slide tfoot, .remark-slide tr:nth-child(even) { background: #eee } 62 | 63 | @page { margin: 0; } 64 | @media print { 65 | .remark-slide-scaler { 66 | width: 100% !important; 67 | height: 100% !important; 68 | transform: scale(1) !important; 69 | top: 0 !important; 70 | left: 0 !important; 71 | } 72 | } 73 | -------------------------------------------------------------------------------- /static/slides/what-is-rmd.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | output: html_document 3 | --- 4 | 5 | .left-column[ 6 | 7 | 8 | ? 9 | 10 | ] 11 | 12 | .right-column[ 13 | 14 | # What is R Markdown? 15 | 16 | 17 | 1. An authoring framework for data science. 18 | 19 | 1. A document format (`.Rmd`). 20 | 21 | 1. An R package named `rmarkdown`. 22 | 23 | 1. A file format for making dynamic documents with R. 24 | 25 | 1. A tool for integrating prose, code, and results. 26 | 27 | 1. A computational document. 28 | 29 | 1. Wizardry. 30 | 31 | ] 32 | -------------------------------------------------------------------------------- /themes/hugo-academic/.editorconfig: -------------------------------------------------------------------------------- 1 | # editorconfig.org 2 | 3 | root = true 4 | 5 | [*] 6 | charset = utf-8 7 | end_of_line = lf 8 | indent_size = 2 9 | indent_style = space 10 | insert_final_newline = true 11 | trim_trailing_whitespace = true 12 | 13 | [*.toml] 14 | max_line_length = 100 15 | 16 | [*.md] 17 | trim_trailing_whitespace = false 18 | 19 | [layouts/shortcodes/*.html] 20 | insert_final_newline = false 21 | -------------------------------------------------------------------------------- /themes/hugo-academic/.github/FUNDING.yml: -------------------------------------------------------------------------------- 1 | # These are supported funding model platforms 2 | 3 | github: # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2] 4 | patreon: cushen 5 | open_collective: # Replace with a single Open Collective username 6 | ko_fi: # Replace with a single Ko-fi username 7 | tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel 8 | community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry 9 | liberapay: # Replace with a single Liberapay username 10 | issuehunt: # Replace with a single IssueHunt username 11 | otechie: # Replace with a single Otechie username 12 | custom: https://paypal.me/cushen 13 | -------------------------------------------------------------------------------- /themes/hugo-academic/.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- 1 | ### Purpose 2 | 3 | Describe the purpose of this change. If there is an existing issue that is resolved by this pull request, please reference it in the form `Fixes #1234` where 1234 is the relevant issue number. 4 | 5 | ### Screenshots 6 | 7 | If this is a GUI change, try to include screenshots of the change. If not, please delete this section. 8 | 9 | ### Documentation 10 | 11 | If this is an enhancement, add a link here to the corresponding pull request on https://github.com/sourcethemes/academic-www or describe the documentation changes necessary. 12 | -------------------------------------------------------------------------------- /themes/hugo-academic/.gitignore: -------------------------------------------------------------------------------- 1 | # IDE specific 2 | .idea/ 3 | .vscode/ 4 | resources/ 5 | 6 | # Jupyter 7 | .ipynb_checkpoints/ 8 | 9 | # Node 10 | node_modules/ 11 | -------------------------------------------------------------------------------- /themes/hugo-academic/LICENSE.md: -------------------------------------------------------------------------------- 1 | The MIT License (MIT) 2 | 3 | Copyright (c) 2016-present George Cushen 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy of 6 | this software and associated documentation files (the "Software"), to deal in 7 | the Software without restriction, including without limitation the rights to 8 | use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of 9 | the Software, and to permit persons to whom the Software is furnished to do so, 10 | subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS 17 | FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR 18 | COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER 19 | IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN 20 | CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. 21 | -------------------------------------------------------------------------------- /themes/hugo-academic/academic.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rstudio-education/communicate-rmd-workshop/3b19af19dffe98f2f69b446b312649e77da0e732/themes/hugo-academic/academic.png -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/default.md: -------------------------------------------------------------------------------- 1 | --- 2 | # Documentation: https://sourcethemes.com/academic/docs/managing-content/ 3 | 4 | title: "{{ replace .Name "-" " " | title }}" 5 | subtitle: "" 6 | summary: "" 7 | authors: [] 8 | tags: [] 9 | categories: [] 10 | date: {{ .Date }} 11 | lastmod: {{ .Date }} 12 | featured: false 13 | draft: false 14 | 15 | # Featured image 16 | # To use, add an image named `featured.jpg/png` to your page's folder. 17 | # Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight. 18 | image: 19 | caption: "" 20 | focal_point: "" 21 | preview_only: false 22 | 23 | # Projects (optional). 24 | # Associate this post with one or more of your projects. 25 | # Simply enter your project's folder or file name without extension. 26 | # E.g. `projects = ["internal-project"]` references `content/project/deep-learning/index.md`. 27 | # Otherwise, set `projects = []`. 28 | projects: [] 29 | --- 30 | -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/docs.md: -------------------------------------------------------------------------------- 1 | --- 2 | # Documentation: https://sourcethemes.com/academic/docs/managing-content/ 3 | 4 | title: "{{ replace .Name "-" " " | title }}" 5 | linktitle: "{{ replace .Name "-" " " | title }}" 6 | summary: 7 | date: {{ .Date }} 8 | lastmod: {{ .Date }} 9 | draft: false # Is this a draft? true/false 10 | toc: true # Show table of contents? true/false 11 | type: docs # Do not modify. 12 | 13 | # Add menu entry to sidebar. 14 | # - Substitute `example` with the name of your course/documentation folder. 15 | # - name: Declare this menu item as a parent with ID `name`. 16 | # - parent: Reference a parent ID if this page is a child. 17 | # - weight: Position of link in menu. 18 | menu: 19 | example: 20 | name: YourParentID 21 | # parent: YourParentID 22 | weight: 1 23 | --- 24 | -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/home.md: -------------------------------------------------------------------------------- 1 | +++ 2 | # A section created with the Blank widget. 3 | widget = "blank" # See https://sourcethemes.com/academic/docs/page-builder/ 4 | headless = true # This file represents a page section. 5 | active = true # Activate this widget? true/false 6 | weight = 1 # Order that this section will appear. 7 | 8 | # Note: a full width section format can be enabled by commenting out the `title` and `subtitle` with a `#`. 9 | title = "{{ replace .Name "-" " " | title }}" 10 | subtitle = "" 11 | 12 | [design] 13 | # Choose how many columns the section has. Valid values: 1 or 2. 14 | columns = "1" 15 | 16 | [design.background] 17 | # Apply a background color, gradient, or image. 18 | # Uncomment (by removing `#`) an option to apply it. 19 | # Choose a light or dark text color by setting `text_color_light`. 20 | # Any HTML color name or Hex value is valid. 21 | 22 | # Background color. 23 | # color = "navy" 24 | 25 | # Background gradient. 26 | # gradient_start = "DeepSkyBlue" 27 | # gradient_end = "SkyBlue" 28 | 29 | # Background image. 30 | # image = "image.jpg" # Name of image in `static/img/`. 31 | # image_darken = 0.6 # Darken the image? Range 0-1 where 0 is transparent and 1 is opaque. 32 | 33 | # Text color (true=light or false=dark). 34 | # text_color_light = true 35 | 36 | [design.spacing] 37 | # Customize the section spacing. Order is top, right, bottom, left. 38 | # padding = ["0px", "0px", "0px", "0px"] 39 | 40 | [advanced] 41 | # Custom CSS. 42 | css_style = "" 43 | 44 | # CSS class. 45 | css_class = "" 46 | +++ 47 | 48 | [**Add some elements here**](https://sourcethemes.com/academic/docs/writing-markdown-latex/) 49 | -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/post/index.md: -------------------------------------------------------------------------------- 1 | --- 2 | # Documentation: https://sourcethemes.com/academic/docs/managing-content/ 3 | 4 | title: "{{ replace .Name "-" " " | title }}" 5 | subtitle: "" 6 | summary: "" 7 | authors: [] 8 | tags: [] 9 | categories: [] 10 | date: {{ .Date }} 11 | lastmod: {{ .Date }} 12 | featured: false 13 | draft: false 14 | 15 | # Featured image 16 | # To use, add an image named `featured.jpg/png` to your page's folder. 17 | # Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight. 18 | image: 19 | caption: "" 20 | focal_point: "" 21 | preview_only: false 22 | 23 | # Projects (optional). 24 | # Associate this post with one or more of your projects. 25 | # Simply enter your project's folder or file name without extension. 26 | # E.g. `projects = ["internal-project"]` references `content/project/deep-learning/index.md`. 27 | # Otherwise, set `projects = []`. 28 | projects: [] 29 | --- 30 | -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/project/index.md: -------------------------------------------------------------------------------- 1 | --- 2 | # Documentation: https://sourcethemes.com/academic/docs/managing-content/ 3 | 4 | title: "{{ replace .Name "-" " " | title }}" 5 | summary: "" 6 | authors: [] 7 | tags: [] 8 | categories: [] 9 | date: {{ .Date }} 10 | 11 | # Optional external URL for project (replaces project detail page). 12 | external_link: "" 13 | 14 | # Featured image 15 | # To use, add an image named `featured.jpg/png` to your page's folder. 16 | # Focal points: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight. 17 | image: 18 | caption: "" 19 | focal_point: "" 20 | preview_only: false 21 | 22 | # Custom links (optional). 23 | # Uncomment and edit lines below to show custom links. 24 | # links: 25 | # - name: Follow 26 | # url: https://twitter.com 27 | # icon_pack: fab 28 | # icon: twitter 29 | 30 | url_code: "" 31 | url_pdf: "" 32 | url_slides: "" 33 | url_video: "" 34 | 35 | # Slides (optional). 36 | # Associate this project with Markdown slides. 37 | # Simply enter your slide deck's filename without extension. 38 | # E.g. `slides = "example-slides"` references `content/slides/example-slides.md`. 39 | # Otherwise, set `slides = ""`. 40 | slides: "" 41 | --- 42 | -------------------------------------------------------------------------------- /themes/hugo-academic/archetypes/slides/index.md: -------------------------------------------------------------------------------- 1 | --- 2 | # Documentation: https://sourcethemes.com/academic/docs/managing-content/ 3 | 4 | title: "{{ replace .Name "-" " " | title }}" 5 | summary: "" 6 | authors: [] 7 | tags: [] 8 | categories: [] 9 | date: {{ .Date }} 10 | slides: 11 | # Choose a theme from https://github.com/hakimel/reveal.js#theming 12 | theme: black 13 | # Choose a code highlighting style (if highlighting enabled in `params.toml`) 14 | # Light style: github. Dark style: dracula (default). 15 | highlight_style: dracula 16 | --- 17 | 18 | # Title 19 | 20 | Author Name 21 | 22 | --- 23 | 24 | ## Slide 2 25 | 26 | ... 27 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/css/reveal.css: -------------------------------------------------------------------------------- 1 | /************************************************* 2 | * Reveal JS 3 | **************************************************/ 4 | 5 | /* This is a copy of MathJax's `.mjx-chtml` with font-family added to override `.reveal span`. */ 6 | /* See https://github.com/hakimel/reveal.js/issues/1924 */ 7 | .reveal span.mjx-chtml { 8 | display: inline-block; 9 | line-height: 0; 10 | text-indent: 0; 11 | text-align: left; 12 | text-transform: none; 13 | font-style: normal; 14 | font-weight: normal; 15 | font-size: 100%; 16 | font-size-adjust: none; 17 | letter-spacing: normal; 18 | word-wrap: normal; 19 | word-spacing: normal; 20 | white-space: nowrap; 21 | float: none; 22 | direction: ltr; 23 | max-width: none; 24 | max-height: none; 25 | min-width: 0; 26 | min-height: 0; 27 | border: 0; 28 | margin: 0; 29 | padding: 1px 0; 30 | font-family: MJXc-TeX-math-I,MJXc-TeX-math-Ix,MJXc-TeX-math-Iw; 31 | } 32 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/css/reveal_custom.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rstudio-education/communicate-rmd-workshop/3b19af19dffe98f2f69b446b312649e77da0e732/themes/hugo-academic/assets/css/reveal_custom.css -------------------------------------------------------------------------------- /themes/hugo-academic/assets/js/mathjax-config.js: -------------------------------------------------------------------------------- 1 | window.MathJax = { 2 | CommonHTML: { linebreaks: { automatic: true } }, 3 | tex2jax: { inlineMath: [ ['$', '$'], ['\\(','\\)'] ], displayMath: [ ['$$','$$'], ['\\[', '\\]'] ], processEscapes: false }, 4 | TeX: { noUndefined: { attributes: { mathcolor: 'red', mathbackground: '#FFEEEE', mathsize: '90%' } } }, 5 | messageStyle: 'none' 6 | }; 7 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/academic/_integrations.scss: -------------------------------------------------------------------------------- 1 | /* Mermaid.js div */ 2 | div.mermaid { 3 | width: 100%; 4 | text-align: center; 5 | } 6 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/academic/_listings.scss: -------------------------------------------------------------------------------- 1 | /************************************************* 2 | * List items 3 | **************************************************/ 4 | 5 | .view-list-item { 6 | margin-bottom: 1rem; 7 | } 8 | 9 | .pub-icon { 10 | color: rgba(0, 0, 0, 0.54); 11 | font-size: 0.81em; 12 | padding-right: 6px; 13 | } 14 | 15 | .view-list-item .article-metadata { 16 | margin-bottom: 0; 17 | } 18 | 19 | .pub-list-item .pub-abstract { 20 | font-size: 1rem; 21 | } 22 | 23 | .pub-list-item .btn-links { 24 | padding-top: 10px; 25 | } 26 | 27 | /************************************************* 28 | * Compact (stream) list view 29 | **************************************************/ 30 | 31 | .media.stream-item { 32 | margin-bottom: 2rem; 33 | } 34 | 35 | .media.stream-item .article-title, 36 | .card-simple .article-title { 37 | font-size: 1.2rem; 38 | } 39 | 40 | .media.stream-item .article-style, 41 | .card-simple .article-style { 42 | margin-top: 2px; 43 | font-size: 0.8rem; 44 | } 45 | 46 | .media.stream-item .stream-meta { 47 | margin-top: 12px; 48 | } 49 | 50 | .media.stream-item img { 51 | max-width: 150px; 52 | height: auto; 53 | object-fit: cover; 54 | } 55 | 56 | @media screen and (max-width: 768px) { 57 | .media.stream-item img { 58 | max-width: 80px; 59 | } 60 | } 61 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/academic/academic.scss: -------------------------------------------------------------------------------- 1 | /************************************************* 2 | * Academic: The Website Builder for Hugo 3 | * Designed by @GeorgeCushen 4 | * https://sourcethemes.com/academic/ 5 | * License: https://github.com/gcushen/hugo-academic/blob/master/LICENSE.md 6 | **************************************************/ 7 | 8 | @import "root"; 9 | @import "nav"; 10 | @import "card"; 11 | @import "search"; 12 | @import "content"; 13 | @import "listings"; 14 | @import "widgets"; 15 | @import "docs"; 16 | @import "dark"; 17 | @import "integrations"; 18 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/bootstrap_variables.scss: -------------------------------------------------------------------------------- 1 | /* Set Bootstrap variables */ 2 | 3 | // Set colors. 4 | $primary: $sta-primary; 5 | $text-muted: rgba(0,0,0,0.54); 6 | 7 | // Container widths - override XL default of `1140px`. 8 | $container-max-widths: ( 9 | sm: 540px, 10 | md: 720px, 11 | lg: 960px, 12 | xl: 1200px 13 | ); 14 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/main.scss: -------------------------------------------------------------------------------- 1 | {{- $scr := .Scratch -}} 2 | {{- $site := $scr.Get "site" -}} 3 | {{- partial "functions/parse_theme" . -}} 4 | 5 | $sta-darken-percentage: 10%; 6 | $sta-lighten-percentage: 10%; 7 | 8 | $sta-font-size: {{ $scr.Get "font_size" }}; 9 | $sta-font-size-small: {{ $scr.Get "font_size_small" }}; 10 | 11 | $sta-font-body: {{ $scr.Get "body_font" }}; 12 | $sta-font-heading: {{ $scr.Get "heading_font" }}; 13 | $sta-font-nav: {{ $scr.Get "nav_font" }}; 14 | $sta-font-mono: {{ $scr.Get "mono_font" }}; 15 | 16 | $sta-primary: {{ $scr.Get "primary" }}; 17 | $sta-primary-light: lighten($sta-primary, $sta-lighten-percentage); 18 | $sta-primary-dark: darken($sta-primary, $sta-darken-percentage); 19 | 20 | $sta-link: {{ $scr.Get "link" }}; 21 | $sta-link-hover: {{ $scr.Get "link_hover" }}; 22 | 23 | $sta-menu-primary: {{ $scr.Get "menu_primary" }}; 24 | $sta-menu-text: {{ $scr.Get "menu_text" }}; 25 | $sta-menu-text-active: {{ $scr.Get "menu_text_active" }}; 26 | $sta-menu-title: {{ $scr.Get "menu_title" }}; 27 | 28 | $sta-background: {{ $scr.Get "background" }}; 29 | $sta-dark-background: {{ $scr.Get "dark_background" }}; 30 | 31 | $sta-home-section-odd: {{ $scr.Get "home_section_odd" }}; 32 | $sta-home-section-even: {{ $scr.Get "home_section_even" }}; 33 | 34 | $sta-dark-home-section-odd: {{ $scr.Get "dark_home_section_odd" }}; 35 | $sta-dark-home-section-even: {{ $scr.Get "dark_home_section_even" }}; 36 | 37 | @import "bootstrap_variables"; 38 | @import "vendor/bootstrap/bootstrap"; 39 | @import "academic/academic"; 40 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/vendor/bootstrap/_alert.scss: -------------------------------------------------------------------------------- 1 | // 2 | // Base styles 3 | // 4 | 5 | .alert { 6 | position: relative; 7 | padding: $alert-padding-y $alert-padding-x; 8 | margin-bottom: $alert-margin-bottom; 9 | border: $alert-border-width solid transparent; 10 | @include border-radius($alert-border-radius); 11 | } 12 | 13 | // Headings for larger alerts 14 | .alert-heading { 15 | // Specified to prevent conflicts of changing $headings-color 16 | color: inherit; 17 | } 18 | 19 | // Provide class for links that match alerts 20 | .alert-link { 21 | font-weight: $alert-link-font-weight; 22 | } 23 | 24 | 25 | // Dismissible alerts 26 | // 27 | // Expand the right padding and account for the close button's positioning. 28 | 29 | .alert-dismissible { 30 | padding-right: $close-font-size + $alert-padding-x * 2; 31 | 32 | // Adjust close link position 33 | .close { 34 | position: absolute; 35 | top: 0; 36 | right: 0; 37 | padding: $alert-padding-y $alert-padding-x; 38 | color: inherit; 39 | } 40 | } 41 | 42 | 43 | // Alternate styles 44 | // 45 | // Generate contextual modifier classes for colorizing the alert. 46 | 47 | @each $color, $value in $theme-colors { 48 | .alert-#{$color} { 49 | @include alert-variant(theme-color-level($color, $alert-bg-level), theme-color-level($color, $alert-border-level), theme-color-level($color, $alert-color-level)); 50 | } 51 | } 52 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/vendor/bootstrap/_badge.scss: -------------------------------------------------------------------------------- 1 | // Base class 2 | // 3 | // Requires one of the contextual, color modifier classes for `color` and 4 | // `background-color`. 5 | 6 | .badge { 7 | display: inline-block; 8 | padding: $badge-padding-y $badge-padding-x; 9 | @include font-size($badge-font-size); 10 | font-weight: $badge-font-weight; 11 | line-height: 1; 12 | text-align: center; 13 | white-space: nowrap; 14 | vertical-align: baseline; 15 | @include border-radius($badge-border-radius); 16 | @include transition($badge-transition); 17 | 18 | @at-root a#{&} { 19 | @include hover-focus { 20 | text-decoration: none; 21 | } 22 | } 23 | 24 | // Empty badges collapse automatically 25 | &:empty { 26 | display: none; 27 | } 28 | } 29 | 30 | // Quick fix for badges in buttons 31 | .btn .badge { 32 | position: relative; 33 | top: -1px; 34 | } 35 | 36 | // Pill badges 37 | // 38 | // Make them extra rounded with a modifier to replace v3's badges. 39 | 40 | .badge-pill { 41 | padding-right: $badge-pill-padding-x; 42 | padding-left: $badge-pill-padding-x; 43 | @include border-radius($badge-pill-border-radius); 44 | } 45 | 46 | // Colors 47 | // 48 | // Contextual variations (linked badges get darker on :hover). 49 | 50 | @each $color, $value in $theme-colors { 51 | .badge-#{$color} { 52 | @include badge-variant($value); 53 | } 54 | } 55 | -------------------------------------------------------------------------------- /themes/hugo-academic/assets/sass/vendor/bootstrap/_breadcrumb.scss: -------------------------------------------------------------------------------- 1 | .breadcrumb { 2 | display: flex; 3 | flex-wrap: wrap; 4 | padding: $breadcrumb-padding-y $breadcrumb-padding-x; 5 | margin-bottom: $breadcrumb-margin-bottom; 6 | list-style: none; 7 | background-color: $breadcrumb-bg; 8 | @include border-radius($breadcrumb-border-radius); 9 | } 10 | 11 | .breadcrumb-item { 12 | // The separator between breadcrumbs (by default, a forward-slash: "/") 13 | + .breadcrumb-item { 14 | padding-left: $breadcrumb-item-padding; 15 | 16 | &::before { 17 | display: inline-block; // Suppress underlining of the separator in modern browsers 18 | padding-right: $breadcrumb-item-padding; 19 | color: $breadcrumb-divider-color; 20 | content: $breadcrumb-divider; 21 | } 22 | } 23 | 24 | // IE9-11 hack to properly handle hyperlink underlines for breadcrumbs built 25 | // without `