├── .Renviron ├── .Rprofile ├── .gitignore ├── .travis.yml ├── 01_install.Rmd ├── 02_r-basics.Rmd ├── 03_version-control-r-markdown.Rmd ├── 05_data-care-feeding.Rmd ├── 06_dplyr-intro.Rmd ├── 07_dplyr-single-table.Rmd ├── 08_tidy-data.Rmd ├── 09_import-export.Rmd ├── 10_factors.Rmd ├── 11_character-vectors.Rmd ├── 12_character-encoding.Rmd ├── 13_date-times.Rmd ├── 14_multiple-tibbles.Rmd ├── 15_join-tibbles.Rmd ├── 16_table-lookup.Rmd ├── 17_r-objects-indexing.Rmd ├── 18_functions-part1.Rmd ├── 19_functions-part2.Rmd ├── 20_functions-part3.Rmd ├── 21_functions-practicum.Rmd ├── 22_r-graphics.Rmd ├── 23_ggplot2.Rmd ├── 24_effective-graphs.Rmd ├── 25_colors.Rmd ├── 26_qualitative-colors.Rmd ├── 27_secrets-happy-graphics.Rmd ├── 28_saving-figures.Rmd ├── 29_multiple-plots.Rmd ├── 30_package-overview.Rmd ├── 31_write-package.Rmd ├── 32_system-prep-packages.Rmd ├── 33_create-package.Rmd ├── 34_workflows.Rmd ├── 35_get-data-from-web.Rmd ├── 36_api-wrappers.Rmd ├── 37_diy-web-data.Rmd ├── 38_shiny.Rmd ├── 39_appendix.Rmd ├── 40_references.Rmd ├── DESCRIPTION ├── LICENSE ├── README.md ├── _bookdown.yml ├── _output.yml ├── _redirects ├── admin ├── 01_get-prev-stat545-urls.R ├── 01_make-bookdown-mappings.R ├── 01_make-happygit-mappings.R ├── 02_make-redirects-mapping.R ├── README.md ├── deprecated_stat545_urls.csv ├── make-deprecated-csv.R ├── manual-grep-and-replace.R ├── prev_stat545_to_bookdown.csv ├── prev_stat545_to_happygit.csv ├── prev_stat545_urls.csv └── redirects_mappings.csv ├── anchor-links.js ├── assets ├── favicon.ico ├── fonts.css ├── fonts │ ├── muli-v16-latin-700.eot │ ├── muli-v16-latin-700.svg │ ├── muli-v16-latin-700.ttf │ ├── muli-v16-latin-700.woff │ ├── muli-v16-latin-700.woff2 │ ├── muli-v16-latin-700italic.eot │ ├── muli-v16-latin-700italic.svg │ ├── muli-v16-latin-700italic.ttf │ ├── muli-v16-latin-700italic.woff │ ├── muli-v16-latin-700italic.woff2 │ ├── muli-v16-latin-italic.eot │ ├── muli-v16-latin-italic.svg │ ├── muli-v16-latin-italic.ttf │ ├── muli-v16-latin-italic.woff │ ├── muli-v16-latin-italic.woff2 │ ├── muli-v16-latin-regular.eot │ ├── muli-v16-latin-regular.svg │ ├── muli-v16-latin-regular.ttf │ ├── muli-v16-latin-regular.woff │ ├── muli-v16-latin-regular.woff2 │ ├── prata-v10-latin-regular.eot │ ├── prata-v10-latin-regular.svg │ ├── prata-v10-latin-regular.ttf │ ├── prata-v10-latin-regular.woff │ ├── prata-v10-latin-regular.woff2 │ ├── source-code-pro-v11-latin-regular.eot │ ├── source-code-pro-v11-latin-regular.svg │ ├── source-code-pro-v11-latin-regular.ttf │ ├── source-code-pro-v11-latin-regular.woff │ └── source-code-pro-v11-latin-regular.woff2 ├── stat545-blank.png ├── stat545-logo-v2.png ├── stat545-logo.png └── style.css ├── book.bib ├── common.R ├── header.html ├── img ├── Iona_island.png ├── figures-io-p1.png ├── figures-io-p2.png ├── figures-io-p3.png ├── figures-io-p4.png ├── gapminder-color-scheme-ggplot2.png ├── ggplot2book-fig6.6.png ├── how-to-draw-an-own-imgur.jpg ├── less-is-more-darkhorse-analytics.gif ├── ombd.png ├── omdb-demo-json.png ├── omdb-demo-xml.png ├── pubs.png ├── r.col.black.bkgd.pdf ├── r.col.white.bkgd.pdf ├── r.pch.pdf ├── regexbytrialanderror-big-smaller.png ├── rplos-highbrow.png ├── rtools-install.png ├── shiny-addinputs.png ├── shiny-addplot.png ├── shiny-inputs.png ├── shiny-layout.png ├── shiny-publish.png ├── shiny-runapp.png ├── shiny-slides.pdf ├── shiny-stopapp.png ├── spotify-howtobuildmvp.jpg └── viridis-sample2.png ├── index.Rmd ├── links.md ├── packages.bib ├── preamble.tex ├── renv.lock ├── renv ├── .gitignore ├── activate.R └── settings.dcf ├── stat545.Rproj └── supporting-docs ├── GapminderHead.html ├── automation01_slides ├── Makefile ├── README.md ├── article │ ├── .gitignore │ ├── Makefile │ ├── article.Rmd │ ├── figure.gv │ └── figure.png ├── bcl-data.csv ├── images │ ├── UniqTag-md.png │ ├── UniqTag-pdf.png │ ├── activity.gv │ ├── activity.png │ ├── article.gv │ ├── article.png │ ├── cc-by.png │ ├── pipeline.gv │ ├── pipeline.png │ ├── sjackman.jpg │ ├── stat540diffmethleuk.png │ └── workflow-rmd-md.png ├── index.html ├── reveal.js │ ├── css │ │ ├── print │ │ │ └── pdf.css │ │ ├── reveal.min.css │ │ └── theme │ │ │ ├── simple.css │ │ │ └── sky.css │ ├── js │ │ └── reveal.min.js │ ├── lib │ │ └── js │ │ │ ├── classList.js │ │ │ └── head.min.js │ └── plugin │ │ ├── notes │ │ └── notes.js │ │ └── zoom-js │ │ └── zoom.js ├── slides.md └── slides.revealjs ├── foofactors-README.Rmd ├── foofactors-vignette.Rmd ├── scraping.Rmd ├── shiny.Rmd └── webdata01_slides.html /.Renviron: -------------------------------------------------------------------------------- 1 | RENV_CONFIG_USER_PROFILE=TRUE 2 | -------------------------------------------------------------------------------- /.Rprofile: -------------------------------------------------------------------------------- 1 | source("renv/activate.R") 2 | -------------------------------------------------------------------------------- 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