├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── CRAN-SUBMISSION ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── EBpostdens.R ├── EBpostthresh.R ├── GammaPriorCh.R ├── LogNormalPriorCh.R ├── NYleukemia.R ├── NYleukemia_sf.R ├── RcppExports.R ├── SpatialEpi-package.R ├── bayes_cluster.R ├── besag_newell.R ├── circle.R ├── create_geo_objects.R ├── eBayes.R ├── estimate_lambda.R ├── expected.R ├── grid2latlong.R ├── kulldorff.R ├── latlong2grid.R ├── leglabs.R ├── mapvariable.R ├── pennLC.R ├── plotmap.R ├── polygon2spatial_polygon.R ├── process_MCMC_sample.R ├── scotland.R ├── scotland_sf.R ├── sf_objects.R └── zones.R ├── README.Rmd ├── README.md ├── README_figure ├── README-unnamed-chunk-6-1.png ├── README-unnamed-chunk-7-1.png └── README-unnamed-chunk-8-1.png ├── SpatialEpi.Rproj ├── cran-comments.md ├── data-raw ├── NY_add_sf.R ├── add_sf_data.R ├── scotland │ ├── scot.dbf │ ├── scot.shp │ ├── scot.shx │ ├── scotland.dat │ └── scotland_add_sf.R └── sids │ ├── sids.dbf │ ├── sids.shp │ └── sids.shx ├── data ├── NYleukemia.rda ├── NYleukemia_sf.rda ├── pennLC.rda ├── pennLC_sf.rda ├── scotland.rda └── scotland_sf.rda ├── man ├── EBpostdens.Rd ├── EBpostthresh.Rd ├── GammaPriorCh.Rd ├── LogNormalPriorCh.Rd ├── NYleukemia.Rd ├── NYleukemia_sf.Rd ├── bayes_cluster.Rd ├── besag_newell.Rd ├── circle.Rd ├── create_geo_objects.Rd ├── eBayes.Rd ├── estimate_lambda.Rd ├── expected.Rd ├── grid2latlong.Rd ├── kulldorff.Rd ├── latlong2grid.Rd ├── leglabs.Rd ├── mapvariable.Rd ├── pennLC.Rd ├── pennLC_sf.Rd ├── plotmap.Rd ├── polygon2spatial_polygon.Rd ├── process_MCMC_sample.Rd ├── scotland.Rd ├── scotland_sf.Rd └── zones.Rd ├── src ├── .gitignore ├── RcppExports.cpp ├── bayes_cluster.cpp └── cluster_detection.cpp ├── tests ├── testthat.R └── testthat │ └── test-dummy_test.R └── vignettes ├── .gitignore ├── Jonno_SISMID ├── SISMID-Cluster.Rmd ├── SISMID-Cluster.pdf └── SISMID-Cluster_files │ └── figure-beamer │ ├── unnamed-chunk-2-1.pdf │ ├── unnamed-chunk-4-1.pdf │ ├── unnamed-chunk-8-1.pdf │ └── unnamed-chunk-9-1.pdf ├── Manuscript ├── Manuscript.Rmd ├── bibliography.bib ├── ieee.csl ├── sample.bib ├── view.jpg └── wlpeerj.cls └── Old_Vignette ├── SpatialEpi.Rnw ├── SpatialEpi.pdf └── bibliography.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rudeboybert/SpatialEpi/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/rudeboybert/SpatialEpi/HEAD/.github/workflows/R-CMD-check.yaml 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