├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── LICENCE.note ├── NAMESPACE ├── NEWS ├── R ├── AO.R ├── clm.R ├── clm.Thetamat.R ├── clm.anova.R ├── clm.fit.R ├── clm.fitter.R ├── clm.frames.R ├── clm.methods.R ├── clm.nominal_test.R ├── clm.predict.R ├── clm.profile.R ├── clm.simple.R ├── clm.slice.R ├── clm.slice2D.R ├── clm.start.R ├── clm2.R ├── clmm.R ├── clmm.formula.R ├── clmm.methods.R ├── clmm.ranef.R ├── clmm.ssr.R ├── clmm.start.R ├── clmm2.R ├── clmm2.utils.R ├── contrast_utils.R ├── control.R ├── convergence.R ├── derivatives.R ├── drop.coef.R ├── gdist.R ├── gumbel.R ├── lgamma.R ├── terms_utils.R ├── utils.R └── warning_functions.R ├── README.md ├── data ├── income.rda ├── soup.rda └── wine.rda ├── inst └── CITATION ├── man ├── VarCorr.Rd ├── addtermOld.Rd ├── anovaOld.Rd ├── clm.Rd ├── clm.anova.Rd ├── clm.control.Rd ├── clm.controlOld.Rd ├── clm.fit.Rd ├── clmOld.Rd ├── clmm.Rd ├── clmm.control.Rd ├── clmm.controlOld.Rd ├── clmmOld.Rd ├── confint.clm.Rd ├── confint.clmmOld.Rd ├── confintOld.Rd ├── convergence.clm.Rd ├── dropCoef.Rd ├── gfun.Rd ├── gumbel.Rd ├── income.Rd ├── lgamma.Rd ├── nominal.test.Rd ├── ordinal-package.Rd ├── predict.Rd ├── predictOld.Rd ├── ranef.Rd ├── slice.clm.Rd ├── soup.Rd ├── updateOld.Rd └── wine.Rd ├── misc ├── copyright_header.txt └── modify_copyright_header.R ├── old_vignettes ├── clm_intro.Rnw ├── clm_intro.pdf ├── clm_tutorial.Rnw ├── clm_tutorial.pdf └── ordinal.bib ├── ordinal.Rproj ├── src ├── get_fitted.c ├── init.c ├── links.c ├── links.h └── utilityFuns.c ├── tests ├── anova.R ├── clm.fit.R ├── clm.formula.R ├── clmm.R ├── clmm.control.R ├── clmm.formula.R ├── clmm.methods.R ├── confint.R ├── nominal.test.R ├── ranef.loading.R ├── test-all.R ├── test.clm.Theta.R ├── test.clm.convergence.R ├── test.clm.flex.link.R ├── test.clm.model.matrix.R ├── test.clm.predict.R ├── test.clm.profile.R ├── test.clm.single.anova.R ├── test.general.R ├── test.makeThresholds.R ├── test.sign.R ├── 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