├── .DS_Store ├── Figures ├── .DS_Store ├── EF11_panelB.pdf ├── EF11_panelB.png ├── EF11_panel_C.pdf ├── EF11_panel_C.png ├── Extended_Figure1.pdf ├── Extended_Figure1.png ├── Extended_Figure11.pdf ├── Extended_Figure11.png ├── Extended_Figure4.pdf ├── Extended_Figure6.pdf ├── Extended_Figure_8.pdf ├── Extended_Figure_8B.pdf ├── Extended_Figure_8B.png ├── Extended_Figure_8C.pdf ├── Extended_Figure_8C.png ├── Extended_Figure_8D.pdf ├── Extended_Figure_8D.png ├── Fig1.png ├── Fig2.png ├── Fig3.png ├── Fig4.png ├── Fig5.png ├── Fig6.png ├── Figure1BCDE.pdf ├── Figure1D_nutlin_v1.pdf ├── Figure1D_nutlin_v1.png ├── Figure1_erlotinibv1.pdf ├── Figure3.pdf ├── Figure3.png ├── Figure5A.pdf ├── Figure5A.png ├── Figure5_panelBC.pdf ├── Figure6B.png ├── Figure7C_onePatient.pdf ├── Figure_Cross_Resistance.pdf ├── ROC_PDvsR.pdf ├── ROC_PDvsR.png ├── cross_resistance_correlation.pdf └── figure5Dv0.pdf ├── README.md ├── Test ├── .DS_Store ├── Test_data │ └── Sample_data_response.xlsx └── Test_figures │ ├── Fig1.png │ ├── Fig2.png │ ├── Fig3.png │ ├── Fig4.png │ ├── Fig5.png │ └── Fig6.png └── Tools ├── .DS_Store ├── Running_PERCEPTION_for_new_dataset.Rmd ├── Step1_Build_Perception_models.Rmd ├── Step2_Figure1.Rmd ├── Step3_Figure3.Rmd ├── Step5_Figure5_and_Extended_Figure9_10.Rmd ├── Step6_ExtendedFigure4-6.Rmd ├── Step7_ExtendedFigure1.Rmd ├── Step8_Figure6.Rmd ├── step0A_functions_needed.Rmd └── step0B_functions_needed.Rmd /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ruppinlab/PERCEPTION/HEAD/.DS_Store -------------------------------------------------------------------------------- /Figures/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ruppinlab/PERCEPTION/HEAD/Figures/.DS_Store -------------------------------------------------------------------------------- /Figures/EF11_panelB.pdf: 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