├── LICENSE ├── PatchWarp ├── applywarp_Npatches.m ├── applywarp_Npatches_singletiffstack.m ├── imnormalize2.m ├── make_downsampled_tiff.m ├── make_template_fftdenoise.m ├── make_template_from_file_multiple.m ├── patchwarp.m ├── patchwarp_across_sessions.m ├── patchwarp_across_sessions_apply.m ├── patchwarp_across_sessions_demo.m ├── patchwarp_affine.m ├── patchwarp_demo.m ├── patchwarp_rigid.m ├── pyramid_registration.m └── utils │ ├── Akinori_Mitani_motion_correct_files │ ├── @BilinearImageRegistrator │ │ └── BilinearImageRegistrator.m │ ├── @BilinearPyramidImageRegistrator │ │ └── BilinearPyramidImageRegistrator.m │ ├── @CorrelationCalculator │ │ └── CorrelationCalculator.m │ ├── @ImageBasis │ │ └── ImageBasis.m │ ├── @ImageRegistrator │ │ └── ImageRegistrator.m │ ├── @ImageRegistratorPyramid │ │ └── ImageRegistratorPyramid.m │ ├── @ImageWithMoment │ │ └── ImageWithMoment.m │ ├── @OpticalFlowImageRegistrator │ │ └── OpticalFlowImageRegistrator.m │ ├── @PyramidImageRegistrator │ │ └── PyramidImageRegistrator.m │ ├── Logger.m │ ├── common_regexp.m │ ├── downsample_chunk.m │ ├── downsample_mean.m │ ├── fastdir.m │ ├── fastmovefile.m │ ├── get_frame_tag_from_info.m │ ├── imnormalize.m │ ├── make_template.m │ ├── max2d_subpixel.m │ ├── parse_image_input.m │ ├── rank_transform.m │ ├── tempname_if_on_network.m │ ├── tempname_if_on_network2.m │ └── write_tiff.m │ ├── README.md │ ├── ScanImageTiffReader │ ├── Contents.m │ ├── LICENSE │ ├── ScanImageTiffReader.m │ ├── ScanImageTiffReaderTests.m │ ├── index.m │ ├── mexScanImageTiffClose.mexw64 │ ├── mexScanImageTiffData.mexw64 │ ├── mexScanImageTiffImageDescriptions.mexw64 │ ├── mexScanImageTiffMetadata.mexw64 │ ├── mexScanImageTiffOpen.mexw64 │ └── mexScanImageTiffReaderAPIVersion.mexw64 │ ├── ecc_patchwarp │ ├── README.txt │ ├── applyWarpOnPts.m │ ├── cameraman.tif │ ├── ecc_demo.m │ ├── ecc_patchwarp.m │ ├── get7x7Gaussfilt.m │ ├── image_jacobian_onPts.m │ ├── license_2017.txt │ ├── lininterp2_fast.m │ ├── next_level.m 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