├── .gitignore ├── 1_QC.R ├── 1_plotSettings.R ├── 1_preprocessing.R ├── 2_FlowSOM.R ├── 2_Rtsne.R ├── 2_SPADE.R ├── 2_SPADE_10000.R ├── 2_scaffoldMap.R ├── 3_FlowSOM_meta.R ├── 3_SamSPECTRAL.R ├── 3_flowClust.R ├── 3_flowMeans.R ├── 3_flowPeaks.R ├── 3_immunoclust.R ├── 3_prepare_flock.R ├── 3_prepare_hdpgmm.R ├── 4_citrus.R ├── LICENSE └── README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saeyslab/FlowCytometryScripts/HEAD/.gitignore -------------------------------------------------------------------------------- /1_QC.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saeyslab/FlowCytometryScripts/HEAD/1_QC.R -------------------------------------------------------------------------------- /1_plotSettings.R: -------------------------------------------------------------------------------- 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