├── .github └── ISSUE_TEMPLATE.md ├── .gitignore ├── CONTRIBUTING.rst ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── notebooks ├── demo.ipynb └── output_images │ ├── pbmc3k_pysct.png │ ├── pbmc3k_pysct_vs_lognorm.png │ ├── pysct_glmgp_residvar.png │ └── pysct_thetaml_model_pars.png ├── pysctransform ├── __init__.py ├── fit.py ├── fit_glmgp.py ├── jax_bfgs.py ├── plotting.py ├── pysctransform.py └── r_bw.py ├── requirements.txt ├── setup.cfg └── setup.py /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saketkc/pySCTransform/HEAD/.github/ISSUE_TEMPLATE.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saketkc/pySCTransform/HEAD/.gitignore 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