├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── __init__.py ├── docs ├── .nojekyll ├── Basic usage of PyPhi rel 4.pdf ├── _modules │ ├── index.html │ ├── pyphi.html │ ├── pyphi_batch │ │ └── pyphi_batch.html │ └── pyphi_plots │ │ └── pyphi_plots.html ├── _sources │ ├── index.rst.txt │ ├── modules.rst.txt │ ├── pyphi.rst.txt │ ├── pyphi_batch.rst.txt │ └── pyphi_plots.rst.txt ├── _static │ ├── _sphinx_javascript_frameworks_compat.js │ ├── basic.css │ ├── css │ │ ├── badge_only.css │ │ ├── fonts │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ ├── fontawesome-webfont.woff2 │ │ │ ├── lato-bold-italic.woff │ │ │ ├── lato-bold-italic.woff2 │ │ │ ├── lato-bold.woff │ │ │ ├── lato-bold.woff2 │ │ │ ├── lato-normal-italic.woff │ │ │ ├── lato-normal-italic.woff2 │ │ │ ├── lato-normal.woff │ │ │ └── lato-normal.woff2 │ │ └── theme.css │ ├── doctools.js │ ├── documentation_options.js │ ├── file.png │ ├── fonts │ │ ├── Lato │ │ │ ├── lato-bold.eot │ │ │ ├── lato-bold.ttf │ │ │ ├── lato-bold.woff │ │ │ ├── lato-bold.woff2 │ │ │ ├── lato-bolditalic.eot │ │ │ ├── lato-bolditalic.ttf │ │ │ ├── lato-bolditalic.woff │ │ │ ├── lato-bolditalic.woff2 │ │ │ ├── lato-italic.eot │ │ │ ├── lato-italic.ttf │ │ │ ├── lato-italic.woff │ │ │ ├── lato-italic.woff2 │ │ │ ├── lato-regular.eot │ │ │ ├── lato-regular.ttf │ │ │ ├── lato-regular.woff │ │ │ └── lato-regular.woff2 │ │ └── RobotoSlab │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ └── roboto-slab-v7-regular.woff2 │ ├── jquery.js │ ├── js │ │ ├── badge_only.js │ │ ├── theme.js │ │ └── versions.js │ ├── language_data.js │ ├── minus.png │ ├── plus.png │ ├── pygments.css │ ├── searchtools.js │ └── sphinx_highlight.js ├── genindex.html ├── index.html ├── modules.html ├── objects.inv ├── py-modindex.html ├── pyphi.html ├── pyphi_batch.html ├── pyphi_plots.html ├── search.html └── searchindex.js ├── examples ├── Basic calculations PCA and PLS │ ├── Automobiles PCA w MD.xls │ ├── Automobiles PLS.xls │ ├── Example_Script.py │ ├── Example_Script_testing_MD_by_NLP.py │ └── plotting_scores_for_newx.py ├── Batch analysis │ ├── Batch Dryer Case Study.xlsx │ ├── Batch Film Coating.xlsx │ ├── basic_batch_analysis.py │ └── batch_dryer_case_study.py ├── JRPLS and TPLS │ ├── jrpls_tpls_dataset.xlsx │ └── jrpls_tpls_example.py ├── LPLS │ ├── lpls_dataset.xlsx │ └── lpls_example.py ├── LWPLS │ ├── NIRdata_tablets.MAT │ └── lwpls_example.py ├── Misc │ ├── build_polynomial_regression.py │ └── data.xlsx ├── Multi-block PLS │ ├── MBDataset.xlsx │ └── mbpls_example.py ├── NIR Calibration │ ├── NIR.xlsx │ └── 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