├── LICENSE ├── README.md ├── data ├── ADR_mesh_list_all.txt ├── Features_ADRs_predictions.csv ├── Full_result_ADRmesh_Genemesh_pubmed_NEW.csv ├── Full_result_ADRmesh_Genemesh_pubmed_NEW_106.csv ├── baseMatrix.Rdata ├── compounds.csv ├── final_gene_mesh_all.txt ├── meddr1a_full_12092006.xlsx ├── mergedassaynumber-to-onewordname.csv ├── predicted_ADR_target_final.txt ├── predicted_gene2mesh.txt ├── predicted_meddra2mesh.txt ├── summ_metrics.csv ├── summ_metrics_ADRs.csv ├── summ_metrics_V2.csv └── v1_compounds_FDA_2018.csv.gz ├── manual └── .empty └── scripts ├── ADR_target.ipynb ├── OpenFDAoutput2modelformat_demo.ipynb ├── Pubmed_search_validation_statistics_negpairs_from_pos_rev.ipynb ├── Pubmed_search_validation_statistics_rev.ipynb ├── R_code_modeling.R ├── merge_fda.py ├── openFDAapi.py ├── openFDAoutput2modelformat.py ├── pubmed_query_mesh_both_all.R └── pubmed_query_mesh_both_positive.R /LICENSE: -------------------------------------------------------------------------------- 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