├── .gitignore ├── .travis.yml ├── AUTHORS ├── CHANGELOG.md ├── LICENSE ├── Makefile.am ├── README.md ├── VERSION ├── compile ├── configure.ac ├── m4 ├── libtool.m4 ├── ltoptions.m4 ├── ltsugar.m4 ├── ltversion.m4 ├── lt~obsolete.m4 └── m4_ax_check_zlib.m4 ├── src ├── Makefile.am ├── gwani.c ├── gwani.h ├── identity_result.h ├── kseq.h ├── main.c ├── run-all-tests ├── run-all-tests.log └── run-all-tests.trs └── tests ├── .deps ├── .dirstamp ├── run_all_tests-check-panito.Po └── run_all_tests-run-all-tests.Po ├── .dirstamp ├── check-panito.c ├── check-panito.h ├── data ├── small_all_same.aln ├── small_some_variation.aln └── small_variable_length.aln └── run-all-tests.c /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sanger-pathogens/panito/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sanger-pathogens/panito/HEAD/.travis.yml -------------------------------------------------------------------------------- /AUTHORS: -------------------------------------------------------------------------------- 1 | Andrew J. 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