├── Analysis Pipeline for Mus musculus Sample GSM9009135 ├── DESeq2 ├── DESeq2_GO_KEGG_GSEA.R ├── Data Processing and Gene Annotation ├── README.md ├── Understanding DESeq2 Statistical Model ├── ggplot 2.R ├── heatmap.R └── setup_mouse_data.sh /Analysis Pipeline for Mus musculus Sample GSM9009135: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/Analysis Pipeline for Mus musculus Sample GSM9009135 -------------------------------------------------------------------------------- /DESeq2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/DESeq2 -------------------------------------------------------------------------------- /DESeq2_GO_KEGG_GSEA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/DESeq2_GO_KEGG_GSEA.R -------------------------------------------------------------------------------- /Data Processing and Gene Annotation: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/Data Processing and Gene Annotation -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/README.md -------------------------------------------------------------------------------- /Understanding DESeq2 Statistical Model: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/Understanding DESeq2 Statistical Model -------------------------------------------------------------------------------- /ggplot 2.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/ggplot 2.R -------------------------------------------------------------------------------- /heatmap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/heatmap.R -------------------------------------------------------------------------------- /setup_mouse_data.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarahtolba/RNA-Seq-Analysis-toturials/HEAD/setup_mouse_data.sh --------------------------------------------------------------------------------