├── README.md ├── lambda.R ├── manhattan.R ├── prep.PCA.sh ├── qq.three_plots.R ├── qq_by_info.R ├── qq_by_maf.R ├── qqplot.R ├── run_smartPCA.project.sh └── run_smartPCA.sh /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/README.md -------------------------------------------------------------------------------- /lambda.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/lambda.R -------------------------------------------------------------------------------- /manhattan.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/manhattan.R -------------------------------------------------------------------------------- /prep.PCA.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/prep.PCA.sh -------------------------------------------------------------------------------- /qq.three_plots.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/qq.three_plots.R -------------------------------------------------------------------------------- /qq_by_info.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/qq_by_info.R -------------------------------------------------------------------------------- /qq_by_maf.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/qq_by_maf.R -------------------------------------------------------------------------------- /qqplot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/qqplot.R -------------------------------------------------------------------------------- /run_smartPCA.project.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/run_smartPCA.project.sh -------------------------------------------------------------------------------- /run_smartPCA.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/saralpulit/gwas-scripts/HEAD/run_smartPCA.sh --------------------------------------------------------------------------------