├── AutoDock.py ├── LICENSE ├── README.md └── Scripts ├── Box.py ├── CD.py ├── Commands_1 ├── Commands_2 ├── Commands_3 ├── Downloader.py ├── HPC_env.txt ├── JavaScript.txt ├── Machine Learning ├── AC.py ├── Bayesian-GAN.py ├── CNN.py ├── CleanRL_DQN.py ├── ConvolutionalNN_OLD-Notes.py ├── DQN.py ├── DQN_keras.py ├── FeedForwardNN_From_Tutorial.py ├── FeedForwardNN_OLD-Notes.py ├── FeedForwardNN_TF.py ├── GAN-1.py ├── GAN-2.py ├── GPU_test.py ├── Grid.py ├── LSTM-1.py ├── LSTM-2.py ├── MLP.py ├── MachineLearning_1.py ├── MachineLearning_2.py ├── NeuralNetworks.py ├── PPO.py ├── README.md ├── RecurrentNN_OLD-Notes.py ├── RecurrentNN_TF.py ├── TF_tutorial.py ├── TensorFlow.py ├── YOLOv2.py ├── YOLOv2_OLD.py ├── YOLOv2_old.py ├── YOLOv3.py ├── fruits.csv ├── fruits0-3.csv ├── lexicon1.py ├── lexicon2.py ├── network.py ├── neurone.py ├── nietzsche.txt ├── one.py ├── population_search.py └── stateful_LSTM.py ├── MintEnv_22.sh ├── OSPREY_Kstar.py ├── OSPREY_install.sh ├── PBS_SLURM.batch ├── Rosetta Scripts ├── Abinitio.bash ├── Abinitio_OLD ├── Cluster_OLD ├── Design ├── Epigrafting_1 ├── Epigrafting_2 ├── FFL_1 ├── FFL_2 ├── FragmentPicker ├── Ideal ├── InterfaceAnalyser ├── Refine ├── Relax ├── Remodel ├── Revert ├── Rosetta-LigandDock.md ├── RosettaDesign Notes ├── RosettaDock.py ├── Symmetry ├── VIP └── dbclean.py ├── SimulatedAnealing.py ├── UbuntuEnv_22.04.sh ├── UbuntuEnv_24.04.sh ├── YouTube & Twitch ├── Lab.xcf └── YouTube_Tutorials.xcf ├── ZeroRemainFind.py ├── colours.py ├── diameter.py ├── gmx.pbs ├── omics.py ├── pepper.py ├── quaternions.py └── sockets.py /AutoDock.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarisabban/Notes/HEAD/AutoDock.py -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sarisabban/Notes/HEAD/LICENSE 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