├── .circleci └── config.yml ├── .coveragerc ├── .gitignore ├── LICENCE ├── Makefile ├── README.md ├── examples ├── compare_doc_collections.py └── compare_doc_pairs.py ├── res ├── samples │ ├── A │ │ ├── data-sample-1.ann │ │ └── data-sample-2.ann │ ├── B │ │ ├── data-sample-1.ann │ │ └── data-sample-2.ann │ └── other │ │ ├── duplicates_equals.ann │ │ ├── duplicates_equals_b.ann │ │ ├── final_embedding_a.ann │ │ ├── final_embedding_b.ann │ │ ├── incorrect.ann │ │ ├── incorrect_b.ann │ │ ├── incorrect_duplicate_mix.ann │ │ ├── incorrect_duplicate_mix_b.ann │ │ ├── no_overlaps_equals.ann │ │ ├── no_overlaps_equals_b.ann │ │ ├── partial.ann │ │ ├── partial_b.ann │ │ ├── partial_different.ann │ │ └── partial_different_b.ann └── tests │ ├── sampledoc.ann │ └── unsupporteddoc.ann ├── setup.py ├── src ├── bratutils │ ├── __init__.py │ ├── agreement.py │ ├── bratdata.py │ ├── redactor.py │ └── utils.py └── tests │ ├── __init__.py │ └── test_datastructures.py └── test_requirements.txt 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