├── CONTRIBUTING.md ├── LICENCE ├── README.md ├── cwl ├── apply_filter_cwl.json ├── prepare_features_cwl.json ├── svf_cwl.json └── train_apply_test_cwl.json ├── data ├── benchmarks │ ├── data_big.png │ ├── data_med.png │ ├── data_small.png │ └── execution_time.png └── wes │ ├── 6_features │ ├── HG001_NIST7035_dbsnp_SNVs.snv.sav │ ├── HG001_NIST7035_dbsnp_SNVs.table │ ├── HG001_NIST7035_dbsnp_indels.indel.sav │ ├── HG001_NIST7035_dbsnp_indels.table │ └── HG005_oslo_exome_chr20.vcf │ └── 7_features │ ├── HG001_NIST7035_raw.dbsnp.vcf │ ├── HG002_oslo_exome_dbsnp_SNVs.table │ └── HG002_oslo_exome_dbsnp_indels.table ├── models ├── model_6_features_wgs_indel.sav ├── model_6_features_wgs_snv.sav ├── model_7_features_wes_indel.sav └── model_7_features_wes_snv.sav ├── svf_apply.py ├── svf_test.py ├── svf_train.py └── test ├── make_medium_test.sh └── testing_parallel.py /CONTRIBUTING.md: -------------------------------------------------------------------------------- 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