├── .Rprofile ├── .github ├── CONTRIBUTING.md ├── ISSUE_TEMPLATE.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ └── build_site.yml ├── .gitignore ├── .prettierrc ├── .renvignore ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── _ARCHIVE ├── R │ ├── load.R │ ├── manipulation.R │ ├── misc.R │ ├── output.R │ ├── plotting.R │ ├── references.R │ ├── repositories.R │ └── titles.R ├── build_scRNAtools.R ├── descriptions.json ├── faqs.json ├── single_cell_software.csv ├── spreadsheet2database.R └── titles.csv ├── app ├── add.R ├── analysis.R ├── archive.R ├── build.R ├── categories.R ├── check.R ├── git.R ├── github.R ├── load.R ├── logo.R ├── pkgs-cache.R ├── references.R ├── regex.R ├── save.R ├── sctool-class.R ├── search.R ├── stats.R ├── ui.R ├── update.R └── utils.R ├── database ├── archive │ ├── 2019-12-20-RaceID2 │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ ├── 2019-12-20-StemID │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ ├── 2020-04-29-LTMG │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ ├── 2021-03-26-scGEApp │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ ├── 2021-04-23-Cell_BLAST │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ ├── 2021-04-23-CrossTalkeR │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv │ └── 2021-08-11-SCDC │ │ ├── categories-idx.tsv │ │ ├── categories.tsv │ │ ├── citations-cache.tsv │ │ ├── doi-idx.tsv │ │ ├── ignored.tsv │ │ ├── reference-links.tsv │ │ ├── references.tsv │ │ ├── repositories.tsv │ │ └── tools.tsv ├── categories-idx.tsv ├── categories.tsv ├── doi-idx.tsv ├── ignored.tsv ├── reference-links.tsv ├── references.tsv ├── repositories.tsv └── tools.tsv ├── docs ├── analysis.html ├── contact.html ├── css │ ├── analysis.css │ ├── index.css │ ├── layout.css │ ├── submit.css │ ├── tools.css │ └── updates.css ├── faqs.html ├── img │ ├── banner-symbol.svg │ ├── banner.png │ ├── banner.svg │ ├── down.svg │ ├── favicon.ico │ ├── favicon │ │ ├── android-icon-144x144.png │ │ ├── android-icon-192x192.png │ │ ├── android-icon-36x36.png │ │ ├── android-icon-48x48.png │ │ ├── android-icon-72x72.png │ │ ├── android-icon-96x96.png │ │ ├── apple-icon-114x114.png │ │ ├── apple-icon-120x120.png │ │ ├── apple-icon-144x144.png │ │ ├── apple-icon-152x152.png │ │ ├── apple-icon-180x180.png │ │ ├── apple-icon-57x57.png │ │ ├── apple-icon-60x60.png │ │ ├── apple-icon-72x72.png │ │ ├── apple-icon-76x76.png │ │ ├── apple-icon-precomposed.png │ │ ├── apple-icon.png │ │ ├── browserconfig.xml │ │ ├── favicon-16x16.png │ │ ├── favicon-32x32.png │ │ ├── favicon-96x96.png │ │ ├── favicon.ico │ │ ├── manifest.json │ │ ├── ms-icon-144x144.png │ │ ├── ms-icon-150x150.png │ │ ├── ms-icon-310x310.png │ │ └── ms-icon-70x70.png │ ├── icon-sort.svg │ ├── icon.png │ ├── icon.svg │ ├── icons │ │ ├── .DS_Store │ │ ├── cell.svg │ │ ├── cells.jpg │ │ ├── lit.svg │ │ ├── mac.svg │ │ ├── network.svg │ │ ├── rna.png │ │ └── tests.svg │ ├── square.png │ ├── square.svg │ ├── twitter.png │ └── twitter.svg ├── index.html ├── js │ ├── jquery-banner.js │ ├── jquery-config.js │ ├── jquery-tools.js │ └── jquery-tools_template.js ├── submit.html ├── table.html ├── test_server.py ├── tools.html └── updates.html ├── renv.lock ├── renv ├── .gitignore ├── activate.R └── settings.json ├── scrnatools └── setup.sh /.Rprofile: -------------------------------------------------------------------------------- 1 | source("renv/activate.R") 2 | -------------------------------------------------------------------------------- /.github/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.github/CONTRIBUTING.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.github/ISSUE_TEMPLATE.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/workflows/build_site.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.github/workflows/build_site.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.gitignore -------------------------------------------------------------------------------- /.prettierrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.prettierrc -------------------------------------------------------------------------------- /.renvignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/.renvignore -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/README.md -------------------------------------------------------------------------------- /_ARCHIVE/R/load.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/load.R -------------------------------------------------------------------------------- /_ARCHIVE/R/manipulation.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/manipulation.R -------------------------------------------------------------------------------- /_ARCHIVE/R/misc.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/misc.R -------------------------------------------------------------------------------- /_ARCHIVE/R/output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/output.R -------------------------------------------------------------------------------- /_ARCHIVE/R/plotting.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/plotting.R -------------------------------------------------------------------------------- /_ARCHIVE/R/references.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/references.R -------------------------------------------------------------------------------- /_ARCHIVE/R/repositories.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/repositories.R -------------------------------------------------------------------------------- /_ARCHIVE/R/titles.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/R/titles.R -------------------------------------------------------------------------------- /_ARCHIVE/build_scRNAtools.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/build_scRNAtools.R -------------------------------------------------------------------------------- /_ARCHIVE/descriptions.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/descriptions.json -------------------------------------------------------------------------------- /_ARCHIVE/faqs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/faqs.json -------------------------------------------------------------------------------- /_ARCHIVE/single_cell_software.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/single_cell_software.csv -------------------------------------------------------------------------------- /_ARCHIVE/spreadsheet2database.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/spreadsheet2database.R -------------------------------------------------------------------------------- /_ARCHIVE/titles.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/_ARCHIVE/titles.csv -------------------------------------------------------------------------------- /app/add.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/add.R -------------------------------------------------------------------------------- /app/analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/analysis.R -------------------------------------------------------------------------------- /app/archive.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/archive.R -------------------------------------------------------------------------------- /app/build.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/build.R -------------------------------------------------------------------------------- /app/categories.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/categories.R -------------------------------------------------------------------------------- /app/check.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/check.R -------------------------------------------------------------------------------- /app/git.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/git.R -------------------------------------------------------------------------------- /app/github.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/github.R -------------------------------------------------------------------------------- /app/load.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/load.R -------------------------------------------------------------------------------- /app/logo.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/logo.R -------------------------------------------------------------------------------- /app/pkgs-cache.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/pkgs-cache.R -------------------------------------------------------------------------------- /app/references.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/references.R -------------------------------------------------------------------------------- /app/regex.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/regex.R -------------------------------------------------------------------------------- /app/save.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/save.R -------------------------------------------------------------------------------- /app/sctool-class.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/sctool-class.R -------------------------------------------------------------------------------- /app/search.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/search.R -------------------------------------------------------------------------------- /app/stats.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/stats.R -------------------------------------------------------------------------------- /app/ui.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/ui.R -------------------------------------------------------------------------------- /app/update.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/update.R -------------------------------------------------------------------------------- /app/utils.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/app/utils.R -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/categories-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool Category 2 | RaceID2 RareCells 3 | -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/categories.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/citations-cache.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/citations-cache.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/doi-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool DOI 2 | RaceID2 10.1016/j.stem.2016.05.010 3 | -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/ignored.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/ignored.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/references.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-RaceID2/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-RaceID2/tools.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/categories-idx.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/categories.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/citations-cache.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/citations-cache.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/doi-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/doi-idx.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/ignored.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/ignored.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/references.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2019-12-20-StemID/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2019-12-20-StemID/tools.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/categories-idx.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/categories.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/citations-cache.tsv: -------------------------------------------------------------------------------- 1 | DOI Citations Timestamp Delay 2 | 10.1093/nar/gkz655 1 2020-04-14T13:30:30Z 0 3 | -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/doi-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool DOI 2 | LTMG 10.1093/nar/gkz655 3 | -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/ignored.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/ignored.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/references.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2020-04-29-LTMG/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2020-04-29-LTMG/tools.tsv -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-03-26-scGEApp/categories-idx.tsv -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-03-26-scGEApp/categories.tsv -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/citations-cache.tsv: -------------------------------------------------------------------------------- 1 | DOI Citations Timestamp Delay 2 | 10.1101/544163 2 2021-03-26T16:49:58Z 0 3 | -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/doi-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool DOI 2 | scGEApp 10.1101/544163 3 | -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/ignored.tsv: -------------------------------------------------------------------------------- 1 | Tool Type Name 2 | -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-03-26-scGEApp/references.tsv -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-03-26-scGEApp/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2021-03-26-scGEApp/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-03-26-scGEApp/tools.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/categories-idx.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/categories.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/citations-cache.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/citations-cache.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/doi-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool DOI 2 | Cell_BLAST 10.1038/s41467-020-17281-7 3 | -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/ignored.tsv: -------------------------------------------------------------------------------- 1 | Tool Type Name 2 | Cell_BLAST PyPI cellbase 3 | -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/references.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-Cell_BLAST/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-Cell_BLAST/tools.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/categories-idx.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/categories.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/citations-cache.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/citations-cache.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/doi-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool DOI 2 | CrossTalkeR 10.1101/2021.01.20.427390 3 | -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/ignored.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/ignored.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/references.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2021-04-23-CrossTalkeR/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-04-23-CrossTalkeR/tools.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/categories-idx.tsv: -------------------------------------------------------------------------------- 1 | Tool Category 2 | -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/categories.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/citations-cache.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/citations-cache.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/doi-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/doi-idx.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/ignored.tsv: -------------------------------------------------------------------------------- 1 | Tool Type Name 2 | -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/reference-links.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/reference-links.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/references.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/repositories.tsv -------------------------------------------------------------------------------- /database/archive/2021-08-11-SCDC/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/archive/2021-08-11-SCDC/tools.tsv -------------------------------------------------------------------------------- /database/categories-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/categories-idx.tsv -------------------------------------------------------------------------------- /database/categories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/categories.tsv -------------------------------------------------------------------------------- /database/doi-idx.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/doi-idx.tsv -------------------------------------------------------------------------------- /database/ignored.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/ignored.tsv -------------------------------------------------------------------------------- /database/reference-links.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/reference-links.tsv -------------------------------------------------------------------------------- /database/references.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/references.tsv -------------------------------------------------------------------------------- /database/repositories.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/repositories.tsv -------------------------------------------------------------------------------- /database/tools.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/database/tools.tsv -------------------------------------------------------------------------------- /docs/analysis.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/analysis.html -------------------------------------------------------------------------------- /docs/contact.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/contact.html -------------------------------------------------------------------------------- /docs/css/analysis.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/analysis.css -------------------------------------------------------------------------------- /docs/css/index.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/index.css -------------------------------------------------------------------------------- /docs/css/layout.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/layout.css -------------------------------------------------------------------------------- /docs/css/submit.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/submit.css -------------------------------------------------------------------------------- /docs/css/tools.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/tools.css -------------------------------------------------------------------------------- /docs/css/updates.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/css/updates.css -------------------------------------------------------------------------------- /docs/faqs.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/faqs.html -------------------------------------------------------------------------------- /docs/img/banner-symbol.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/banner-symbol.svg -------------------------------------------------------------------------------- /docs/img/banner.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/banner.png -------------------------------------------------------------------------------- /docs/img/banner.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/banner.svg -------------------------------------------------------------------------------- /docs/img/down.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/down.svg -------------------------------------------------------------------------------- /docs/img/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon.ico -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-144x144.png -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-192x192.png -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-36x36.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-36x36.png -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-48x48.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-48x48.png -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-72x72.png -------------------------------------------------------------------------------- /docs/img/favicon/android-icon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/android-icon-96x96.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-114x114.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-120x120.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-144x144.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-152x152.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-180x180.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-57x57.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-60x60.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-72x72.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-76x76.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon-precomposed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon-precomposed.png -------------------------------------------------------------------------------- /docs/img/favicon/apple-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/apple-icon.png -------------------------------------------------------------------------------- /docs/img/favicon/browserconfig.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/browserconfig.xml -------------------------------------------------------------------------------- /docs/img/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /docs/img/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /docs/img/favicon/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/favicon-96x96.png -------------------------------------------------------------------------------- /docs/img/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/favicon.ico -------------------------------------------------------------------------------- /docs/img/favicon/manifest.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/manifest.json -------------------------------------------------------------------------------- /docs/img/favicon/ms-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/ms-icon-144x144.png -------------------------------------------------------------------------------- /docs/img/favicon/ms-icon-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/ms-icon-150x150.png -------------------------------------------------------------------------------- /docs/img/favicon/ms-icon-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/ms-icon-310x310.png -------------------------------------------------------------------------------- /docs/img/favicon/ms-icon-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/favicon/ms-icon-70x70.png -------------------------------------------------------------------------------- /docs/img/icon-sort.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icon-sort.svg -------------------------------------------------------------------------------- /docs/img/icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icon.png -------------------------------------------------------------------------------- /docs/img/icon.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icon.svg -------------------------------------------------------------------------------- /docs/img/icons/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/.DS_Store -------------------------------------------------------------------------------- /docs/img/icons/cell.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/cell.svg -------------------------------------------------------------------------------- /docs/img/icons/cells.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/cells.jpg -------------------------------------------------------------------------------- /docs/img/icons/lit.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/lit.svg -------------------------------------------------------------------------------- /docs/img/icons/mac.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/mac.svg -------------------------------------------------------------------------------- /docs/img/icons/network.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/network.svg -------------------------------------------------------------------------------- /docs/img/icons/rna.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/rna.png -------------------------------------------------------------------------------- /docs/img/icons/tests.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/icons/tests.svg -------------------------------------------------------------------------------- /docs/img/square.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/square.png -------------------------------------------------------------------------------- /docs/img/square.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/square.svg -------------------------------------------------------------------------------- /docs/img/twitter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/twitter.png -------------------------------------------------------------------------------- /docs/img/twitter.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/img/twitter.svg -------------------------------------------------------------------------------- /docs/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/index.html -------------------------------------------------------------------------------- /docs/js/jquery-banner.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/js/jquery-banner.js -------------------------------------------------------------------------------- /docs/js/jquery-config.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/js/jquery-config.js -------------------------------------------------------------------------------- /docs/js/jquery-tools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/js/jquery-tools.js -------------------------------------------------------------------------------- /docs/js/jquery-tools_template.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/js/jquery-tools_template.js -------------------------------------------------------------------------------- /docs/submit.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/submit.html -------------------------------------------------------------------------------- /docs/table.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/table.html -------------------------------------------------------------------------------- /docs/test_server.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/test_server.py -------------------------------------------------------------------------------- /docs/tools.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/tools.html -------------------------------------------------------------------------------- /docs/updates.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/docs/updates.html -------------------------------------------------------------------------------- /renv.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/renv.lock -------------------------------------------------------------------------------- /renv/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/renv/.gitignore -------------------------------------------------------------------------------- /renv/activate.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/renv/activate.R -------------------------------------------------------------------------------- /renv/settings.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/renv/settings.json -------------------------------------------------------------------------------- /scrnatools: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/scrnatools -------------------------------------------------------------------------------- /setup.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scRNA-tools/scRNA-tools/HEAD/setup.sh --------------------------------------------------------------------------------