├── README.md ├── create_pseudohaploid.sh ├── filter_seq ├── img ├── AlignmentChain.png ├── ChainFiltering.png ├── Pseudohaploid.png └── README.md ├── pseudohaploid.chains.pl └── test ├── basic.fa ├── run_test.output ├── run_tests.sh └── simple.fa /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/README.md -------------------------------------------------------------------------------- /create_pseudohaploid.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/create_pseudohaploid.sh -------------------------------------------------------------------------------- /filter_seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/filter_seq -------------------------------------------------------------------------------- /img/AlignmentChain.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/img/AlignmentChain.png -------------------------------------------------------------------------------- /img/ChainFiltering.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/img/ChainFiltering.png -------------------------------------------------------------------------------- /img/Pseudohaploid.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/img/Pseudohaploid.png -------------------------------------------------------------------------------- /img/README.md: -------------------------------------------------------------------------------- 1 | Image Files 2 | -------------------------------------------------------------------------------- /pseudohaploid.chains.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/pseudohaploid.chains.pl -------------------------------------------------------------------------------- /test/basic.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/test/basic.fa -------------------------------------------------------------------------------- /test/run_test.output: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/test/run_test.output -------------------------------------------------------------------------------- /test/run_tests.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/test/run_tests.sh -------------------------------------------------------------------------------- /test/simple.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/schatzlab/pseudohaploid/HEAD/test/simple.fa --------------------------------------------------------------------------------