├── .gitignore ├── README.md ├── data ├── GoT │ ├── GoT.RDS │ ├── gotS1.dot │ ├── gotS1.gml │ ├── gotS1.graphml │ ├── gotS1.net │ ├── gotS1_matrix.dat │ ├── gotS1_matrix1.dat │ ├── gotS2.graphml │ ├── gotS3.graphml │ ├── gotS4.graphml │ ├── gotS5.graphml │ ├── gotS6.graphml │ └── gotS7.graphml ├── egonet │ ├── ego-1.graphml │ ├── ego-10.graphml │ ├── ego-11.graphml │ ├── ego-12.graphml │ ├── ego-13.graphml │ ├── ego-14.graphml │ ├── ego-15.graphml │ ├── ego-16.graphml │ ├── ego-17.graphml │ ├── ego-18.graphml │ ├── ego-19.graphml │ ├── ego-2.graphml │ ├── ego-20.graphml │ ├── ego-21.graphml │ ├── ego-22.graphml │ ├── ego-23.graphml │ ├── ego-24.graphml │ ├── ego-25.graphml │ ├── ego-26.graphml │ ├── ego-27.graphml │ ├── ego-28.graphml │ ├── ego-29.graphml │ ├── ego-3.graphml │ ├── ego-30.graphml │ ├── ego-31.graphml │ ├── ego-32.graphml │ ├── ego-4.graphml │ ├── ego-5.graphml │ ├── ego-6.graphml │ ├── ego-7.graphml │ ├── ego-8.graphml │ └── ego-9.graphml ├── hero-network.csv ├── lawyers │ ├── ELattr.dat │ ├── ELwork36.dat │ ├── eladv36.dat │ ├── elfriend36.dat │ └── lawyers.RDS ├── media │ ├── Dataset1-Media-Example-EDGES.csv │ └── Dataset1-Media-Example-NODES.csv └── ppmSample-0.graphml ├── examples ├── backbone.Rmd ├── backbone.pdf ├── egonet.Rmd └── egonet.pdf ├── figures ├── adjmat.png ├── adjmat1.png ├── central-lethal.png ├── code1.png ├── code2.png ├── code3.png ├── code4.png ├── code_horror.png ├── colors-nodes.png ├── edge_order1.jpg ├── edge_order2.jpg ├── ggstack.png ├── got_all.png ├── hairball.jpg ├── igraph-plot.png ├── pNET.gif ├── pVIZ.gif ├── program.png ├── pts_shapes.png ├── radial.png ├── reciprocal.png ├── saved-hairball.png ├── saved-hairball.svg ├── stress.jpg ├── ugly-hairball.png ├── visone │ ├── interface.png │ └── program.png └── yeast.png ├── header.html ├── slides.Rmd ├── slides.html ├── workshop.css └── xaringan.css /.gitignore: -------------------------------------------------------------------------------- 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