├── .gitignore ├── LICENSE ├── README.md ├── __init__.py ├── data └── README.md ├── environment.yml ├── figures ├── Fig_1_a-e.png ├── Fig_S1_a-c.png ├── Fig_S4_a-b.png ├── Fig_S6.png └── README.md ├── notebooks ├── attr_rep_plot_UMAP_neg.ipynb ├── c_elegans_negtsne.ipynb ├── c_elegans_tsne_ncvis_umap.ipynb ├── eval_cifar.ipynb ├── human_negtsne.ipynb ├── human_tsne_ncvis_umap.ipynb ├── imba_mnist_negtsne.ipynb ├── imba_mnist_tsne_ncvis_umap.ipynb ├── infonctsne.ipynb ├── k49_negtsne.ipynb ├── k49_tsne_ncvis_umap.ipynb ├── metrics.ipynb ├── ncvis.ipynb ├── negtsne.ipynb ├── parametric.ipynb ├── speed_up.ipynb ├── toy_experiment.ipynb ├── trimap.ipynb ├── tsne.ipynb ├── tsne_vs_ncvis.ipynb ├── umap_vs_negtsne.ipynb ├── umap_vs_negtsne_vary_n_noise.ipynb ├── zebrafish_negtsne.ipynb └── zebrafish_tsne_ncvis_umap.ipynb ├── paths └── scripts ├── __init__.py ├── cifar10_acc.py ├── compute_embds_cne.py ├── compute_embds_umap.py ├── compute_metrics.py ├── not_for_release └── get_videos.py ├── 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